ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags21i20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_186268.1| Oryza sativa (japonica cultivar-group), mRNA Length = 717 Score = 182 bits (92), Expect = 9e-43 Identities = 307/378 (81%), Gaps = 7/378 (1%) Strand = Plus / Plus Query: 3 atcggctacgtcggcgccggnatgcggcgtcggattcagcgtcggcatcacgctcgccgg 62 |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| Sbjct: 346 atcggctacgtcggcgccggc-tgcggcgtcgggttcagcgtcggcgtcacgctcgccgg 404 Query: 63 tgtcggcgtcgggctgccacagcacggcatcatcaagaaccactaccacggcggcggttt 122 ||||||||||| |||| ||||||||| |||||| |||||| |||||| || || Sbjct: 405 cgtcggcgtcggcttgccgcagcacggcctcatcaggaaccagtaccacagc------tt 458 Query: 123 tgcaaacaatgtcccattcgaatcagcaaggttttataccttgaccttgctaagaggtat 182 |||| |||| |||| ||||||||||| |||||||| ||||| ||| | | ||||| | Sbjct: 459 cgcaagcaatatccctttcgaatcagctaggttttacacctttaccatcatcagaggctt 518 Query: 183 gctatgggatgccatcaattatgtgagcaacgccgcagctatgaggaaagaatctcggca 242 | | ||||||||||||| ||||| |||| | | || ||| |||||||||||||||| || Sbjct: 519 ggtctgggatgccatcagttatgcgagccaggtagcggctgtgaggaaagaatctcgaca 578 Query: 243 gaagcttttaagatgtcaggagaaacctcaagtttcaggaggagttgatctgcccaagct 302 | ||| ||| | ||| || || ||||| |||||||||| ||| | ||||||||| | Sbjct: 579 aaggctcctaaactttcatgaaaaccctcagatttcaggaggcgttaacctgcccaagtt 638 Query: 303 ggggaaaggcatgtccagcagcttccgatcgacgatggagtgtatcaaggccttcacaaa 362 |||||| ||| |||| |||||| ||| ||| || ||||||||||| || ||||||| | | Sbjct: 639 ggggaagggcgtgtcaagcagcatccaatccactatggagtgtataaaagccttcaaaga 698 Query: 363 ccagaattggcctccata 380 ||| ||||||||||||| Sbjct: 699 tcagcattggcctccata 716
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 125 bits (63), Expect = 2e-25 Identities = 102/114 (89%), Gaps = 1/114 (0%) Strand = Plus / Minus Query: 3 atcggctacgtcggcgccggnatgcggcgtcggattcagcgtcggcatcacgctcgccgg 62 |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| Sbjct: 2256617 atcggctacgtcggcgccggc-tgcggcgtcgggttcagcgtcggcgtcacgctcgccgg 2256559 Query: 63 tgtcggcgtcgggctgccacagcacggcatcatcaagaaccactaccacggcgg 116 ||||||||||| |||| ||||||||| |||||| |||||| |||||| |||| Sbjct: 2256558 cgtcggcgtcggcttgccgcagcacggcctcatcaggaaccagtaccacagcgg 2256505 Score = 101 bits (51), Expect = 3e-18 Identities = 210/263 (79%) Strand = Plus / Minus Query: 118 ggttttgcaaacaatgtcccattcgaatcagcaaggttttataccttgaccttgctaaga 177 ||||| |||| |||| |||| ||||||||||| |||||||| ||||| ||| | | ||| Sbjct: 2255605 ggtttcgcaagcaatatccctttcgaatcagctaggttttacacctttaccatcatcaga 2255546 Query: 178 ggtatgctatgggatgccatcaattatgtgagcaacgccgcagctatgaggaaagaatct 237 || || | ||||||||||||| ||||| |||| | | || ||| |||||||||||||| Sbjct: 2255545 ggcttggtctgggatgccatcagttatgcgagccaggtagcggctgtgaggaaagaatct 2255486 Query: 238 cggcagaagcttttaagatgtcaggagaaacctcaagtttcaggaggagttgatctgccc 297 || || | ||| ||| | ||| || || ||||| |||||||||| ||| | |||||| Sbjct: 2255485 cgacaaaggctcctaaactttcatgaaaaccctcagatttcaggaggcgttaacctgccc 2255426 Query: 298 aagctggggaaaggcatgtccagcagcttccgatcgacgatggagtgtatcaaggccttc 357 ||| ||||||| ||| |||| |||||| ||| ||| || ||||||||||| || |||||| Sbjct: 2255425 aagttggggaagggcgtgtcaagcagcatccaatccactatggagtgtataaaagccttc 2255366 Query: 358 acaaaccagaattggcctccata 380 | | | ||| ||||||||||||| Sbjct: 2255365 aaagatcagcattggcctccata 2255343
>dbj|AP003824.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_B12 Length = 121362 Score = 125 bits (63), Expect = 2e-25 Identities = 102/114 (89%), Gaps = 1/114 (0%) Strand = Plus / Minus Query: 3 atcggctacgtcggcgccggnatgcggcgtcggattcagcgtcggcatcacgctcgccgg 62 |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| Sbjct: 30316 atcggctacgtcggcgccggc-tgcggcgtcgggttcagcgtcggcgtcacgctcgccgg 30258 Query: 63 tgtcggcgtcgggctgccacagcacggcatcatcaagaaccactaccacggcgg 116 ||||||||||| |||| ||||||||| |||||| |||||| |||||| |||| Sbjct: 30257 cgtcggcgtcggcttgccgcagcacggcctcatcaggaaccagtaccacagcgg 30204 Score = 101 bits (51), Expect = 3e-18 Identities = 210/263 (79%) Strand = Plus / Minus Query: 118 ggttttgcaaacaatgtcccattcgaatcagcaaggttttataccttgaccttgctaaga 177 ||||| |||| |||| |||| ||||||||||| |||||||| ||||| ||| | | ||| Sbjct: 29304 ggtttcgcaagcaatatccctttcgaatcagctaggttttacacctttaccatcatcaga 29245 Query: 178 ggtatgctatgggatgccatcaattatgtgagcaacgccgcagctatgaggaaagaatct 237 || || | ||||||||||||| ||||| |||| | | || ||| |||||||||||||| Sbjct: 29244 ggcttggtctgggatgccatcagttatgcgagccaggtagcggctgtgaggaaagaatct 29185 Query: 238 cggcagaagcttttaagatgtcaggagaaacctcaagtttcaggaggagttgatctgccc 297 || || | ||| ||| | ||| || || ||||| |||||||||| ||| | |||||| Sbjct: 29184 cgacaaaggctcctaaactttcatgaaaaccctcagatttcaggaggcgttaacctgccc 29125 Query: 298 aagctggggaaaggcatgtccagcagcttccgatcgacgatggagtgtatcaaggccttc 357 ||| ||||||| ||| |||| |||||| ||| ||| || ||||||||||| || |||||| Sbjct: 29124 aagttggggaagggcgtgtcaagcagcatccaatccactatggagtgtataaaagccttc 29065 Query: 358 acaaaccagaattggcctccata 380 | | | ||| ||||||||||||| Sbjct: 29064 aaagatcagcattggcctccata 29042
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cgctcgccggtgtcggcgtcgg 74 |||||||||||||||||||||| Sbjct: 5800849 cgctcgccggtgtcggcgtcgg 5800828
>gb|AC104882.30| Mus musculus chromosome 8, clone RP23-401L9, complete sequence Length = 209525 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 cgaatcagcaaggttttatac 161 ||||||||||||||||||||| Sbjct: 184073 cgaatcagcaaggttttatac 184093
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 aatctcggcagaagcttttaa 253 ||||||||||||||||||||| Sbjct: 745131 aatctcggcagaagcttttaa 745111
>gb|AC165282.2| Mus musculus BAC clone RP24-465P22 from chromosome 16, complete sequence Length = 185134 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 ctgcccaagctggggaaaggc 312 ||||||||||||||||||||| Sbjct: 57424 ctgcccaagctggggaaaggc 57404
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 tccagcagcttccgatcgacg 336 ||||||||||||||||||||| Sbjct: 151547 tccagcagcttccgatcgacg 151567
>gb|AC011491.7| Homo sapiens chromosome 19 clone CTB-180A7, complete sequence Length = 118820 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 agctggggaaaggcatgtccagcag 323 |||||||||||||||| |||||||| Sbjct: 61640 agctggggaaaggcatttccagcag 61616
>dbj|AB073162.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:F8H12 Length = 92597 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 608 atttcttcggaattagttttt 628 ||||||||||||||||||||| Sbjct: 59683 atttcttcggaattagttttt 59663
>dbj|AB071139.1| Apis mellifera Ks-1 non-coding nuclear RNA Length = 17525 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 taagtaaattgaagattgcaa 409 ||||||||||||||||||||| Sbjct: 15272 taagtaaattgaagattgcaa 15252
>gb|AC150242.3| Rhinolophus ferrumequinum clone VMRC7-331J24, complete sequence Length = 120894 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 aagctggggaaaggcatgtc 317 |||||||||||||||||||| Sbjct: 115951 aagctggggaaaggcatgtc 115932
>gb|AC115868.12| Mus musculus chromosome 7, clone RP24-329F21, complete sequence Length = 181717 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 589 acatagatacattatacata 608 |||||||||||||||||||| Sbjct: 30008 acatagatacattatacata 30027
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 atcggctacgtcggcgccgg 22 |||||||||||||||||||| Sbjct: 4142749 atcggctacgtcggcgccgg 4142768
>gb|AC175237.3| Loxodonta africana clone VMRC15-323E23, complete sequence Length = 35488 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 aagctggggaaaggcatgtc 317 |||||||||||||||||||| Sbjct: 28087 aagctggggaaaggcatgtc 28068
>gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome 1, complete sequence Length = 170885 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 tcaaggccttcacaaaccag 366 |||||||||||||||||||| Sbjct: 10518 tcaaggccttcacaaaccag 10499
>gb|AC125049.3| Mus musculus BAC clone RP23-367C15 from chromosome 9, complete sequence Length = 211511 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 aggaaagaatctcggcagaa 245 |||||||||||||||||||| Sbjct: 109855 aggaaagaatctcggcagaa 109836
>gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete sequence Length = 114664 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 605 catatttcttcggaattagttttt 628 |||||||||| ||||||||||||| Sbjct: 112304 catatttctttggaattagttttt 112327
>gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete sequence Length = 125855 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 605 catatttcttcggaattagttttt 628 |||||||||| ||||||||||||| Sbjct: 29768 catatttctttggaattagttttt 29745
>emb|AL356785.18| Human DNA sequence from clone RP13-206I21 on chromosome Xp11.3-21.1 Contains part of the ATP11C gene for ATPase, Class VI, type 11C (ATPIG, ATPIQ), complete sequence Length = 165572 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 acccacctgggatcatagcc 449 |||||||||||||||||||| Sbjct: 90031 acccacctgggatcatagcc 90012
>emb|AL357873.17| Human DNA sequence from clone RP11-344F13 on chromosome 1 Contains a novel gene, complete sequence Length = 143508 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 agaaacctcaagtttcagga 282 |||||||||||||||||||| Sbjct: 17721 agaaacctcaagtttcagga 17702
>emb|AL357075.17| Human DNA sequence from clone RP11-486M3 on chromosome 6 Contains the gene for similar to maguin-2; maguin-1 (LOC154043, FLJ31349) and a novel pseudogene. Contains a CpG island, complete sequence Length = 178461 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 591 atagatacattatacatatt 610 |||||||||||||||||||| Sbjct: 95880 atagatacattatacatatt 95861
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 atcggctacgtcggcgccgg 22 |||||||||||||||||||| Sbjct: 1126214 atcggctacgtcggcgccgg 1126195
>gb|AC155227.3| Rhinolophus ferrumequinum clone VMRC7-4K1, complete sequence Length = 160979 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 aagctggggaaaggcatgtc 317 |||||||||||||||||||| Sbjct: 64371 aagctggggaaaggcatgtc 64352
>gb|AC113355.2| Homo sapiens chromosome 5 clone CTD-3007L5, complete sequence Length = 130307 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 586 cacacatagatacattatacatat 609 ||||||||||||||||||| |||| Sbjct: 62073 cacacatagatacattatatatat 62050
>gb|AC087236.11| Homo sapiens 12 BAC RP11-127B1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 61010 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 586 cacacatagatacattatacatat 609 |||||||| ||||||||||||||| Sbjct: 25373 cacacatatatacattatacatat 25396
>gb|AE010249.1| Pyrococcus furiosus DSM 3638, section 124 of 173 of the complete genome Length = 11324 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 aaactacccacctgggatca 444 |||||||||||||||||||| Sbjct: 8618 aaactacccacctgggatca 8637
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 aagctggggaaaggcatgtc 317 |||||||||||||||||||| Sbjct: 1397039 aagctggggaaaggcatgtc 1397020
>gb|AE004627.1| Pseudomonas aeruginosa PAO1, section 188 of 529 of the complete genome Length = 12776 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 atcggctacgtcggcgccgg 22 |||||||||||||||||||| Sbjct: 9457 atcggctacgtcggcgccgg 9438
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 tcgggctgccacagcacggc 90 |||||||||||||||||||| Sbjct: 3284211 tcgggctgccacagcacggc 3284192
>gb|AC061958.11|AC061958 Homo sapiens chromosome 3 clone RP11-6B7, complete sequence Length = 177717 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 atacattatacatatttctt 614 |||||||||||||||||||| Sbjct: 57238 atacattatacatatttctt 57219
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cggtgtcggcgtcgggctgc 79 |||||||||||||||||||| Sbjct: 4213011 cggtgtcggcgtcgggctgc 4213030
>gb|AC153535.4| Mus musculus 10 BAC RP23-398N22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 200061 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 cttttaagatgtcaggagaa 266 |||||||||||||||||||| Sbjct: 63341 cttttaagatgtcaggagaa 63360
>emb|BX255904.6| Zebrafish DNA sequence from clone DKEY-15J16 in linkage group 20, complete sequence Length = 228691 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tgggatgccatcaattatgt 206 |||||||||||||||||||| Sbjct: 129528 tgggatgccatcaattatgt 129547
>emb|CR388170.5| Zebrafish DNA sequence from clone CH211-87E4 in linkage group 20, complete sequence Length = 174079 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 tgggatgccatcaattatgt 206 |||||||||||||||||||| Sbjct: 49330 tgggatgccatcaattatgt 49311
>emb|BX470246.11| Zebrafish DNA sequence from clone DKEYP-8F4 in linkage group 20, complete sequence Length = 148286 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 595 atacattatacatatttctt 614 |||||||||||||||||||| Sbjct: 79205 atacattatacatatttctt 79224
>emb|BX276086.4| Zebrafish DNA sequence from clone CH211-114C9 in linkage group 20, complete sequence Length = 172431 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tgggatgccatcaattatgt 206 |||||||||||||||||||| Sbjct: 125864 tgggatgccatcaattatgt 125883
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 gctcgccggtgtcggcgtcg 73 |||||||||||||||||||| Sbjct: 881072 gctcgccggtgtcggcgtcg 881053
>gb|AC132589.4| Mus musculus BAC clone RP24-258M24 from 1, complete sequence Length = 168097 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 tcaaggccttcacaaaccag 366 |||||||||||||||||||| Sbjct: 148077 tcaaggccttcacaaaccag 148058
>emb|AL844522.7| Zebrafish DNA sequence from clone DKEY-113M9, complete sequence Length = 193193 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 608 atttcttcggaattagtttttggc 631 ||||||||||| |||||||||||| Sbjct: 153008 atttcttcggatttagtttttggc 152985
>gb|AC167525.3| Loxodonta africana clone VMRC15-570H6, complete sequence Length = 29123 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 aagctggggaaaggcatgtc 317 |||||||||||||||||||| Sbjct: 2688 aagctggggaaaggcatgtc 2669
>emb|AL714023.12| Mouse DNA sequence from clone RP23-12H6 on chromosome 2, complete sequence Length = 211570 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 581 catggcacacatagatacattata 604 ||||||||||||| |||||||||| Sbjct: 189096 catggcacacatatatacattata 189073 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,541,389 Number of Sequences: 3902068 Number of extensions: 4541389 Number of successful extensions: 82408 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81986 Number of HSP's gapped (non-prelim): 416 length of query: 640 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 617 effective length of database: 17,143,297,704 effective search space: 10577414683368 effective search space used: 10577414683368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
