>YPH5_THIVI (P45365) Hypothetical 76.5 kDa protein in phbC 3'region (ORF5)|
          Length = 692

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 19/61 (31%), Positives = 35/61 (57%)
 Frame = +2

Query: 14  FLYMICDLEKAREVSGGLHGLVNMTKPVLEAVIFLESIFQSEKRIDLLESLVEKFLTTEQ 193
           F+  +  + +ARE  GG+HGLV +     + ++    +  +EK +  LESL+ K +T E+
Sbjct: 283 FMRHLEQITRAREAQGGVHGLVIIDVDGSQGILNALGLTATEKLLRELESLLSKTMTPEE 342

Query: 194 T 196
           +
Sbjct: 343 S 343

>TAGH_BACSK (Q5WCL2) Teichoic acids export ATP-binding protein tagH (EC|
           3.6.3.40)
          Length = 360

 Score = 36.2 bits (82), Expect = 0.085
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +2

Query: 200 GELASLNDKEELSSIYLEFLDTFGDIQLIKKATTRHTILFSRKRSILPSKKRRADDAVMS 379
           GE+    DK E+   Y ++++ F   +L K+    H       RS+ PS     ++    
Sbjct: 221 GEVREFGDKNEVIKQYEDYINWFN--KLSKEEKEAHKQELKEMRSLAPSLYEEQENG--- 275

Query: 380 GRDKMAKTGDGTQPVM--GTDPNAHNPAVW 463
              K    GDGTQP++    D  A   AVW
Sbjct: 276 ---KAGSGGDGTQPIVQPKRDKQAVKSAVW 302

>Y3856_METAC (Q8TJD0) UPF0285 protein MA3856|
          Length = 325

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 34/106 (32%), Positives = 51/106 (48%)
 Frame = +2

Query: 143 RIDLLESLVEKFLTTEQTQGELASLNDKEELSSIYLEFLDTFGDIQLIKKATTRHTILFS 322
           R  L+E   EK LT E  + E A++++KE L++I  EF    GDI L+   T      FS
Sbjct: 14  RFALIED--EKVLTFELGRAEAAAMSEKEILAAIEREFGIRIGDIDLV-ALTYSMGDGFS 70

Query: 323 RKRSILPSKKRRADDAVMSGRDKMAKTGDGTQPVMGTDPNAHNPAV 460
             + +   + R       +G+    KTG GT+ V     N+  PA+
Sbjct: 71  AIKDVRKLEGRGLQSIEGAGK----KTGGGTR-VFDAVRNSEIPAI 111

>MD1L1_MOUSE (Q9WTX8) Mitotic spindle assembly checkpoint protein MAD1 (Mitotic|
           arrest deficient-like protein 1) (MAD1-like 1)
          Length = 717

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
 Frame = -2

Query: 605 EDRHHKRLLEEQIGAFA----GCSRKLHMQDKQPVVRKQPPIAALMLQKSQ--AKLQDYE 444
           E+  H R ++E  G       G  RKL  Q+K      Q  +  L L+K +  AKLQ +E
Sbjct: 264 EENTHLREMKETNGLLTEELEGLQRKLSRQEKM-----QEALVDLELEKEKLLAKLQSWE 318

Query: 443 HLDQFP*LVGCHLR 402
           +LDQ    +G +LR
Sbjct: 319 NLDQ---TMGLNLR 329

>PYRE_COCIM (O93849) Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRT)|
           (OPRTase)
          Length = 238

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 411 APNQSWELIQMLI---ILQFGLRLLKHQRSNGGLLTHNRLLILHMELTTTASKCPNLLLK 581
           +P+    L+  LI   +L FG   LK  R++    T   LL     L  TAS C ++L  
Sbjct: 4   SPDYKTNLLSHLISNKVLSFGSYTLKSGRNSPYFFT-TTLLHTAPLLHATASACASVLSS 62

Query: 582 QPLMVPILPHTLPRP 626
            P +    P   PRP
Sbjct: 63  PPFVTTSTPDGTPRP 77

>NOX_THET8 (Q60049) NADH dehydrogenase (EC 1.6.99.3) (H(2)O(2) forming NADH|
           oxidase) (NADH:oxygen oxidoreductase)
          Length = 205

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = -1

Query: 438 GSVPMTGWVPSPVLAILSLPDITASSAL 355
           GSVPM G+ P  V AIL LP   A  AL
Sbjct: 153 GSVPMLGFDPERVRAILGLPSHAAIPAL 180

>Y1436_LISIN (P0A4Q7) UPF0144 protein lin1436|
          Length = 520

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +2

Query: 119 ESIFQSEKRIDLLESLVEKFLTTEQTQGELASLNDKEELSSIYL 250
           ESI + +++I+  ES + + +  EQT+ E  S   KEE  SI L
Sbjct: 117 ESISKRQQQIEEKESKLAEMIQAEQTELERISALSKEEAKSIIL 160

>Y1418_LISMF (Q71ZS1) UPF0144 protein LMOf2365_1418|
          Length = 520

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +2

Query: 119 ESIFQSEKRIDLLESLVEKFLTTEQTQGELASLNDKEELSSIYL 250
           ESI + +++I+  ES + + +  EQT+ E  S   KEE  SI L
Sbjct: 117 ESISKRQQQIEEKESKLAEMIQAEQTELERISALSKEEAKSIIL 160

>Y1399_LISMO (P0A4Q6) UPF0144 protein lmo1399|
          Length = 520

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +2

Query: 119 ESIFQSEKRIDLLESLVEKFLTTEQTQGELASLNDKEELSSIYL 250
           ESI + +++I+  ES + + +  EQT+ E  S   KEE  SI L
Sbjct: 117 ESISKRQQQIEEKESKLAEMIQAEQTELERISALSKEEAKSIIL 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,315,194
Number of Sequences: 219361
Number of extensions: 1602967
Number of successful extensions: 4883
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4883
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)