| Clone Name | bags21i19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047E12, full insert sequence Length = 2797 Score = 283 bits (143), Expect = 3e-73 Identities = 332/395 (84%) Strand = Plus / Plus Query: 234 tatcttccatatatttagagtttttggatacctttggggatatacagttgatcaagaagg 293 |||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||| Sbjct: 2038 tatcttccatatttttagagtttttggatctatttggggatgcacaagcgatcaagaagg 2097 Query: 294 ctacaactcgacatactattctattttcacgtaaaaggagcattctgccatcaaagaaac 353 |||| | ||| ||| || || ||||| || || || ||||| ||| |||||||||| | Sbjct: 2098 ctaccaatcggcatcttactcatttttcgcggaagagaagcatgctgtcatcaaagaagc 2157 Query: 354 gaagagccgatgatgctgttatgtctggtagagataaaatggctaaaaccggagatggca 413 ||||||| ||||||| | | ||||| | ||||||||| |||||| | || ||||| | Sbjct: 2158 gaagagctgatgatgttatcatgtcagacagagataaattggctaggattggggatggta 2217 Query: 414 cccaaccagtcatgggaactgatccaaatgctcataatcctgcagtttggcctgcgactt 473 | || ||||| ||||||||||||||||||||||||||||| |||||||||| ||||| | Sbjct: 2218 ctcagccagttgtgggaactgatccaaatgctcataatcctccagtttggccagcgacat 2277 Query: 474 ctgaagcatcagcgcagcaatggggggctgcttacgcacaacaggctgcttatcctgcat 533 |||||||||| | ||| |||||||| |||||||| |||| |||||| |||||||||| | Sbjct: 2278 ctgaagcatcggggcaacaatggggagctgcttatgcaccacaggccacttatcctgcgt 2337 Query: 534 atggagcttacgactacagccagcaaatgccccaatctgctcctcaagcagccgcttatg 593 ||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||| | Sbjct: 2338 atggaacttacgactacagccatcaaatgcctcaatctgctcctcaagcagctgcttacg 2397 Query: 594 gtgcctatcctcccacataccctgcccaggcctac 628 | ||||||||||| |||||||| || ||||||||| Sbjct: 2398 gcgcctatcctccaacataccccgctcaggcctac 2432 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 119 gagtcgatctttcaatctgagaagcgaattgatttgttagaatcactggtggagaagttt 178 ||||||||| ||| |||||| ||||| ||||| || ||||| |||||||| ||||||||| Sbjct: 1923 gagtcgatccttccatctgaaaagcgtattgaatttttagattcactggtcgagaagttt 1982 Query: 179 cttacaactga 189 |||||| |||| Sbjct: 1983 cttacagctga 1993
>gb|AY103949.1| Zea mays PCO103424 mRNA sequence Length = 1035 Score = 208 bits (105), Expect = 2e-50 Identities = 177/201 (88%) Strand = Plus / Plus Query: 427 gggaactgatccaaatgctcataatcctgcagtttggcctgcgacttctgaagcatcagc 486 ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||| | Sbjct: 404 gggaactgatccaaatgcttccaatcctcctgtttggcctgcaacttctgaagcatctgg 463 Query: 487 gcagcaatggggggctgcttacgcacaacaggctgcttatcctgcatatggagcttacga 546 ||| |||||||| ||| |||| ||||| |||||||| ||||||||||||||| ||||||| Sbjct: 464 gcaacaatggggagcttcttatgcacagcaggctgcatatcctgcatatggaacttacga 523 Query: 547 ctacagccagcaaatgccccaatctgctcctcaagcagccgcttatggtgcctatcctcc 606 ||||||||| ||||||||||| |||||||||||||||| || |||||||| |||||||| Sbjct: 524 ctacagccatcaaatgccccagcctgctcctcaagcagctgcctatggtgcttatcctcc 583 Query: 607 cacataccctgcccaggccta 627 |||||| |||| |||||||| Sbjct: 584 aacatactctgcacaggccta 604 Score = 139 bits (70), Expect = 1e-29 Identities = 214/262 (81%) Strand = Plus / Plus Query: 93 cagttcttgaggctgtcatctttctcgagtcgatctttcaatctgagaagcgaattgatt 152 |||| |||||||||||||| ||| ||||| || |||| || || ||||| ||||||| Sbjct: 73 cagtgcttgaggctgtcattcatctagagtcaatttttccatgcgaaaagcgtattgatt 132 Query: 153 tgttagaatcactggtggagaagtttcttacaactgagcagactcaaggggagctggcaa 212 | ||||| ||||| |||||||||||| ||||| |||| |||| || ||| |||||| Sbjct: 133 ttttagactcacttgtggagaagtttgttacacctgaatcatctcagggagaggtggcaa 192 Query: 213 gcttaaacgacaaagaggaattatcttccatatatttagagtttttggatacctttgggg 272 | || |||||||||||| |||||||||||| |||||||||||||||| |||||||| Sbjct: 193 gtctagttgacaaagaggaaatatcttccatatttttagagtttttggatctctttgggg 252 Query: 273 atatacagttgatcaagaaggctacaactcgacatactattctattttcacgtaaaagga 332 || | ||| |||||||||||| |||||| ||||| | ||| |||||| |||| || | Sbjct: 253 atgcaaagtcaatcaagaaggctttaactcggcatacaactcttttttcatgtaagagaa 312 Query: 333 gcattctgccatcaaagaaacg 354 |||||||||||||||||||||| Sbjct: 313 gcattctgccatcaaagaaacg 334
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 135 bits (68), Expect = 2e-28 Identities = 194/236 (82%) Strand = Plus / Minus Query: 283 gatcaagaaggctacaactcgacatactattctattttcacgtaaaaggagcattctgcc 342 ||||||||||||||| | ||| ||| || || ||||| || || || ||||| ||| | Sbjct: 5730199 gatcaagaaggctaccaatcggcatcttactcatttttcgcggaagagaagcatgctgtc 5730140 Query: 343 atcaaagaaacgaagagccgatgatgctgttatgtctggtagagataaaatggctaaaac 402 ||||||||| |||||||| ||||||| | | ||||| | ||||||||| |||||| | Sbjct: 5730139 atcaaagaagcgaagagctgatgatgttatcatgtcagacagagataaattggctaggat 5730080 Query: 403 cggagatggcacccaaccagtcatgggaactgatccaaatgctcataatcctgcagtttg 462 || ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 5730079 tggggatggtactcagccagttgtgggaactgatccaaatgctcataatcctccagtttg 5730020 Query: 463 gcctgcgacttctgaagcatcagcgcagcaatggggggctgcttacgcacaacagg 518 ||| ||||| ||||||||||| | ||| |||||||| |||||||| |||| ||||| Sbjct: 5730019 gccagcgacatctgaagcatcggggcaacaatggggagctgcttatgcaccacagg 5729964 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 522 cttatcctgcatatggagcttacgactacagccagcaaatgccccaatctgctcctcaag 581 |||||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||| Sbjct: 5729699 cttatcctgcgtatggaacttacgactacagccatcaaatgcctcaatctgctcctcaag 5729640 Query: 582 cagccgcttatggtgcctatcctcccacataccc 615 |||| ||||| || ||||||||||| |||||||| Sbjct: 5729639 cagctgcttacggcgcctatcctccaacataccc 5729606 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 119 gagtcgatctttcaatctgagaagcgaattgatttgttagaatcactggtggagaagttt 178 ||||||||| ||| |||||| ||||| ||||| || ||||| |||||||| ||||||||| Sbjct: 5730730 gagtcgatccttccatctgaaaagcgtattgaatttttagattcactggtcgagaagttt 5730671 Query: 179 cttacaactga 189 |||||| |||| Sbjct: 5730670 cttacagctga 5730660
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0021B21, from chromosome 3, complete sequence Length = 166777 Score = 135 bits (68), Expect = 2e-28 Identities = 194/236 (82%) Strand = Plus / Plus Query: 283 gatcaagaaggctacaactcgacatactattctattttcacgtaaaaggagcattctgcc 342 ||||||||||||||| | ||| ||| || || ||||| || || || ||||| ||| | Sbjct: 100972 gatcaagaaggctaccaatcggcatcttactcatttttcgcggaagagaagcatgctgtc 101031 Query: 343 atcaaagaaacgaagagccgatgatgctgttatgtctggtagagataaaatggctaaaac 402 ||||||||| |||||||| ||||||| | | ||||| | ||||||||| |||||| | Sbjct: 101032 atcaaagaagcgaagagctgatgatgttatcatgtcagacagagataaattggctaggat 101091 Query: 403 cggagatggcacccaaccagtcatgggaactgatccaaatgctcataatcctgcagtttg 462 || ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 101092 tggggatggtactcagccagttgtgggaactgatccaaatgctcataatcctccagtttg 101151 Query: 463 gcctgcgacttctgaagcatcagcgcagcaatggggggctgcttacgcacaacagg 518 ||| ||||| ||||||||||| | ||| |||||||| |||||||| |||| ||||| Sbjct: 101152 gccagcgacatctgaagcatcggggcaacaatggggagctgcttatgcaccacagg 101207 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 522 cttatcctgcatatggagcttacgactacagccagcaaatgccccaatctgctcctcaag 581 |||||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||| Sbjct: 101472 cttatcctgcgtatggaacttacgactacagccatcaaatgcctcaatctgctcctcaag 101531 Query: 582 cagccgcttatggtgcctatcctcccacataccc 615 |||| ||||| || ||||||||||| |||||||| Sbjct: 101532 cagctgcttacggcgcctatcctccaacataccc 101565 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 119 gagtcgatctttcaatctgagaagcgaattgatttgttagaatcactggtggagaagttt 178 ||||||||| ||| |||||| ||||| ||||| || ||||| |||||||| ||||||||| Sbjct: 100441 gagtcgatccttccatctgaaaagcgtattgaatttttagattcactggtcgagaagttt 100500 Query: 179 cttacaactga 189 |||||| |||| Sbjct: 100501 cttacagctga 100511
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 135 bits (68), Expect = 2e-28 Identities = 194/236 (82%) Strand = Plus / Minus Query: 283 gatcaagaaggctacaactcgacatactattctattttcacgtaaaaggagcattctgcc 342 ||||||||||||||| | ||| ||| || || ||||| || || || ||||| ||| | Sbjct: 5729412 gatcaagaaggctaccaatcggcatcttactcatttttcgcggaagagaagcatgctgtc 5729353 Query: 343 atcaaagaaacgaagagccgatgatgctgttatgtctggtagagataaaatggctaaaac 402 ||||||||| |||||||| ||||||| | | ||||| | ||||||||| |||||| | Sbjct: 5729352 atcaaagaagcgaagagctgatgatgttatcatgtcagacagagataaattggctaggat 5729293 Query: 403 cggagatggcacccaaccagtcatgggaactgatccaaatgctcataatcctgcagtttg 462 || ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 5729292 tggggatggtactcagccagttgtgggaactgatccaaatgctcataatcctccagtttg 5729233 Query: 463 gcctgcgacttctgaagcatcagcgcagcaatggggggctgcttacgcacaacagg 518 ||| ||||| ||||||||||| | ||| |||||||| |||||||| |||| ||||| Sbjct: 5729232 gccagcgacatctgaagcatcggggcaacaatggggagctgcttatgcaccacagg 5729177 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 522 cttatcctgcatatggagcttacgactacagccagcaaatgccccaatctgctcctcaag 581 |||||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||| Sbjct: 5728912 cttatcctgcgtatggaacttacgactacagccatcaaatgcctcaatctgctcctcaag 5728853 Query: 582 cagccgcttatggtgcctatcctcccacataccc 615 |||| ||||| || ||||||||||| |||||||| Sbjct: 5728852 cagctgcttacggcgcctatcctccaacataccc 5728819 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 119 gagtcgatctttcaatctgagaagcgaattgatttgttagaatcactggtggagaagttt 178 ||||||||| ||| |||||| ||||| ||||| || ||||| |||||||| ||||||||| Sbjct: 5729943 gagtcgatccttccatctgaaaagcgtattgaatttttagattcactggtcgagaagttt 5729884 Query: 179 cttacaactga 189 |||||| |||| Sbjct: 5729883 cttacagctga 5729873
>gb|AC121840.3| Mus musculus BAC clone RP24-79E2 from chromosome 3, complete sequence Length = 180558 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 agagataaaatggctaaaacc 403 ||||||||||||||||||||| Sbjct: 171770 agagataaaatggctaaaacc 171790
>gb|AC122729.23| Medicago truncatula clone mth1-62g18, complete sequence Length = 82977 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 426 tgggaactgatccaaatgctc 446 ||||||||||||||||||||| Sbjct: 33427 tgggaactgatccaaatgctc 33447
>emb|AL079336.27|HSJ662M14 Human DNA sequence from clone RP4-662M14 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 117077 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 atgccccaatctgctcctcaa 580 ||||||||||||||||||||| Sbjct: 28057 atgccccaatctgctcctcaa 28077
>gb|AC162611.2| Mus musculus chromosome 3, clone RP24-86E1, complete sequence Length = 229643 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 gttcttgaggctgtcatcttt 115 ||||||||||||||||||||| Sbjct: 155703 gttcttgaggctgtcatcttt 155723
>gb|AC105177.5| Homo sapiens chromosome 8, clone RP11-91D24, complete sequence Length = 149126 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 atgatctgtgacttggaaaag 43 ||||||||||||||||||||| Sbjct: 100576 atgatctgtgacttggaaaag 100556
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 gaattgatttgttagaatcac 164 ||||||||||||||||||||| Sbjct: 9615327 gaattgatttgttagaatcac 9615307
>emb|BX820631.1|CNS0AA0U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH54ZC08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2933 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 513 aacaggctgcttatcctgcat 533 ||||||||||||||||||||| Sbjct: 949 aacaggctgcttatcctgcat 929
>dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0693E08 Length = 157969 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 gaattgatttgttagaatcac 164 ||||||||||||||||||||| Sbjct: 79545 gaattgatttgttagaatcac 79525
>gb|AC103389.10| Mus musculus chromosome 3, clone RP24-419J17, complete sequence Length = 162643 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 gttcttgaggctgtcatcttt 115 ||||||||||||||||||||| Sbjct: 133162 gttcttgaggctgtcatcttt 133142
>dbj|AP005359.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1470F2, complete sequence Length = 164913 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 atgatctgtgacttggaaaag 43 ||||||||||||||||||||| Sbjct: 47275 atgatctgtgacttggaaaag 47255
>dbj|AP005368.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB870F5, complete sequence Length = 111461 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 atgatctgtgacttggaaaag 43 ||||||||||||||||||||| Sbjct: 109955 atgatctgtgacttggaaaag 109935
>gb|AC131249.43| Medicago truncatula clone mth2-8p18, complete sequence Length = 104866 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 aactgatccaaatgctcata 449 |||||||||||||||||||| Sbjct: 47531 aactgatccaaatgctcata 47512
>emb|AL138854.1|SPAC23G3 S.pombe chromosome I cosmid c23G3 Length = 41181 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 atcactggtggagaagtttc 179 |||||||||||||||||||| Sbjct: 16582 atcactggtggagaagtttc 16563
>gb|AC008501.5| Homo sapiens chromosome 5 clone CTC-439N6, complete sequence Length = 176903 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 atgccccaatctgctcctca 579 |||||||||||||||||||| Sbjct: 130532 atgccccaatctgctcctca 130513
>gb|AC008589.6| Homo sapiens chromosome 5 clone CTC-574I1, complete sequence Length = 121272 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 atgccccaatctgctcctca 579 |||||||||||||||||||| Sbjct: 77671 atgccccaatctgctcctca 77690
>gb|AC008927.6| Homo sapiens chromosome 5 clone CTD-2287O23, complete sequence Length = 165604 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 atgccccaatctgctcctca 579 |||||||||||||||||||| Sbjct: 84000 atgccccaatctgctcctca 84019
>ref|NM_001018499.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC23G3.02c), partial mRNA Length = 14775 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 atcactggtggagaagtttc 179 |||||||||||||||||||| Sbjct: 157 atcactggtggagaagtttc 176
>gb|AC122710.3| Homo sapiens chromosome 5 clone RP11-332J15, complete sequence Length = 204540 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 aattgatttgttagaatcactggt 168 ||||||||| |||||||||||||| Sbjct: 195311 aattgatttcttagaatcactggt 195334
>gb|AF135182.3| Serratia entomophila plasmid pADAP, partial sequence Length = 106143 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 caacaggctgcttatcctgc 531 |||||||||||||||||||| Sbjct: 86265 caacaggctgcttatcctgc 86246
>gb|AC008779.5|AC008779 Homo sapiens chromosome 5 clone CTD-2023H18, complete sequence Length = 123275 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 atgccccaatctgctcctca 579 |||||||||||||||||||| Sbjct: 119914 atgccccaatctgctcctca 119933
>gb|AC099489.2| Homo sapiens chromosome 16 clone CTD-3088G3, complete sequence Length = 204493 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cttggaaaaggcaagggagg 53 |||||||||||||||||||| Sbjct: 110259 cttggaaaaggcaagggagg 110240
>emb|AL954850.12| Mouse DNA sequence from clone RP23-331B22 on chromosome X, complete sequence Length = 146713 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 tactattctattttcacgtaaaag 330 |||||||||||||||| ||||||| Sbjct: 105698 tactattctattttcaagtaaaag 105721
>emb|AL844849.13| Mouse DNA sequence from clone RP23-383L13 on chromosome 2, complete sequence Length = 155501 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aattgatttgttagaatcac 164 |||||||||||||||||||| Sbjct: 71266 aattgatttgttagaatcac 71247 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,073,829 Number of Sequences: 3902068 Number of extensions: 5073829 Number of successful extensions: 94570 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94417 Number of HSP's gapped (non-prelim): 147 length of query: 639 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 616 effective length of database: 17,143,297,704 effective search space: 10560271385664 effective search space used: 10560271385664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)