ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags21i15 |
|---|---|
| Clone Library Name | barley_pub |
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 34.3 bits (77), Expect = 0.32 Identities = 34/115 (29%), Positives = 51/115 (44%) Frame = -2 Query: 384 PSSVLTMPLFSSCRHPGGTMCSSLRKSMALFTSAGSLPPSSKGWPCARYPSSRWRCASRL 205 P T S HP T + S L T A + SS P + P + W + L Sbjct: 4280 PEQTTTPVATMSTIHPSSTP-ETTHTSTVLTTKATTRATSSTSTPSST-PGTTW-ILTEL 4336 Query: 204 W*LARSPVGLRNGDTMWSSVSSTPTWVYTLGTLSMSATRSSTAGNIASLNRKPGT 40 A + G G T ++ SSTP + L L+ +AT +++ G+ A+L+ PGT Sbjct: 4337 TTAATTTAG--TGPT--ATPSSTPGTTWILTELTTTATTTASTGSTATLSSTPGT 4387 Score = 33.1 bits (74), Expect = 0.71 Identities = 44/185 (23%), Positives = 67/185 (36%), Gaps = 21/185 (11%) Frame = -2 Query: 522 LFC--HESCPYAPSFLRTRTPSAARWXXXXXXXXXXXXXXXXXSNAHRPSSVLTMPLFSS 349 +FC + CP P+ T TPS+ + + S P Sbjct: 3633 VFCCNYGHCPSTPATSSTATPSSTPGTTWILTKLTTTATTTESTGSTATPSSTQGP---- 3688 Query: 348 CRHPGGTMCSSLRKSMALFTSAGSLPPSSKGWPCARYPSSRWRC----ASRLW*LARSPV 181 P GT S + TS+ + P SS G A P+ R A+ + S + Sbjct: 3689 ---PAGTPHVSTTATTPTVTSSKATPFSSPGTATA-LPALRSTATTPTATSFTAIPSSSL 3744 Query: 180 GLRNGDTMWSSVS---------------STPTWVYTLGTLSMSATRSSTAGNIASLNRKP 46 G T W+ +S STP V+T L+ +AT + G++A+ + P Sbjct: 3745 G-----TTWTRLSQTTTPMATMSTATPSSTPETVHTSTVLTTTATTTGATGSVATPSSTP 3799 Query: 45 GTLGT 31 GT T Sbjct: 3800 GTAHT 3804 Score = 31.2 bits (69), Expect = 2.7 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -2 Query: 144 SSTPTWVYTLGTLSMSATRSSTAGNIASLNRKPGTLGT 31 SSTP V+T L+ +AT + G++A+ + PGT T Sbjct: 4494 SSTPETVHTSTVLTTTATTTGATGSVATPSSTPGTAHT 4531 Score = 31.2 bits (69), Expect = 2.7 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -2 Query: 144 SSTPTWVYTLGTLSMSATRSSTAGNIASLNRKPGTLGT 31 SSTP V+T L+ +AT + G++A+ + PGT T Sbjct: 2011 SSTPETVHTSTVLTTTATTTGATGSVATPSSTPGTAHT 2048 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -2 Query: 144 SSTPTWVYTLGTLSMSATRSSTAGNIASLNRKPGTLGT 31 SSTP +T L+ +AT + G++A+ + PGT T Sbjct: 2540 SSTPETAHTSTVLTATATTTGATGSVATPSSTPGTAHT 2577
>GPDM_RAT (P35571) Glycerol-3-phosphate dehydrogenase, mitochondrial| precursor (EC 1.1.99.5) (GPD-M) (GPDH-M) Length = 727 Score = 31.6 bits (70), Expect = 2.1 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 14/56 (25%) Frame = +2 Query: 323 HMVPPGWRQEENKGMV--RTEDGR------WALLQL------PRDVEAHPVPDDID 448 H+V PG+ EN G++ T DGR W + + P DV HP+P + D Sbjct: 316 HIVMPGYYSPENMGLLDPATSDGRVIFFLPWEKMTIAGTTDSPTDVTHHPIPSEDD 371
>GPDM_MOUSE (Q64521) Glycerol-3-phosphate dehydrogenase, mitochondrial| precursor (EC 1.1.99.5) (GPD-M) (GPDH-M) Length = 727 Score = 31.6 bits (70), Expect = 2.1 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 14/56 (25%) Frame = +2 Query: 323 HMVPPGWRQEENKGMV--RTEDGR------WALLQL------PRDVEAHPVPDDID 448 H+V PG+ EN G++ T DGR W + + P DV HP+P + D Sbjct: 316 HIVMPGYYSPENMGLLDPATSDGRVIFFLPWEKMTIAGTTDTPTDVTHHPIPSEED 371
>NUDH_THIDA (Q3SH26) Probable (di)nucleoside polyphosphate hydrolase (EC| 3.6.1.-) Length = 183 Score = 31.6 bits (70), Expect = 2.1 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%) Frame = +2 Query: 182 TGDLASYHNLEAHLHLLDGYRAHGQPFELGGRDPALVNKAIDFLRDEHMVPPGWRQEENK 361 T + A + LE + LL G+ ++ + ++LR + VPP W + +N+ Sbjct: 45 TPEQAMFRELEEEVGLLPGH-------------VRILGRTREWLRYD--VPPHWTRRDNR 89 Query: 362 GMVRTEDGRWALLQLP-RDVE------AHP 430 G+ R + W LL+L RD + AHP Sbjct: 90 GLYRGQKQIWFLLRLTGRDCDVSLRASAHP 119
>CRH2_YEAST (P32623) Probable glycosidase CRH2 precursor (EC 3.2.-.-) (Congo| red hypersensitive protein 2) (Unknown transcript 2 protein) Length = 467 Score = 31.2 bits (69), Expect = 2.7 Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 11/120 (9%) Frame = -2 Query: 342 HPGGTMCSSLRKSMALFTSAG--------SLPPSSKGWPCARYPSSRWRCASRLW*LARS 187 H G T S+ + S + TS+ S SSK A SS +S + S Sbjct: 348 HKGATTSSTQKSSSSTATSSSKTSSDHSSSTKKSSKTSSTASSSSSSSSSSS-----SSS 402 Query: 186 PVGLRNGDTMWSSVSSTPT-WVYTLGTLSMSA--TRSSTAGNIASLNRKPGTLGTMSCTL 16 +NGD + SSVSS+ T T ++S SA + SS +GN A N T+ C + Sbjct: 403 STATKNGDKVVSSVSSSVTSQTQTTSSVSGSASSSTSSMSGNNAGANVAANWRLTVLCVI 462
>DEGA_BACSU (P37947) HTH-type transcriptional regulator degA (Degradation| activator) Length = 337 Score = 31.2 bits (69), Expect = 2.7 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 9/64 (14%) Frame = -1 Query: 325 VLVSKKVDGLVHQRRVPSTE----LERLAMRPVSIQQVE-----VRLQIVVASQVSGGFE 173 VL KKVDG++ + S + LE +A + I + + + IVV V GG+E Sbjct: 111 VLKQKKVDGIIFATGIESHDSMSALEEIASEQIPIAMISQDKPLLPMDIVVIDDVRGGYE 170 Query: 172 EWRH 161 +H Sbjct: 171 AAKH 174
>DDC_HAEIN (P71362) L-2,4-diaminobutyrate decarboxylase (EC 4.1.1.-) (DABA| decarboxylase) (DABA-DC) Length = 511 Score = 30.8 bits (68), Expect = 3.5 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = +2 Query: 20 VHDMVPKVPGFLFNEAIFPAVLLRVADMLRVPSVYTH--VGVELTLDHIVSPFLKPTGDL 193 +H+ V V +L NE ++ ++ L T +GV+ +LDH+V FL P+ + Sbjct: 26 MHNAVQAVSAWLKNEKMYTGGSIKQMRALISGFNPTKEGMGVQKSLDHLVEIFLNPSLKV 85 Query: 194 ASYHNLEAHLH 226 H+L AHLH Sbjct: 86 HHPHSL-AHLH 95
>GPDM_HUMAN (P43304) Glycerol-3-phosphate dehydrogenase, mitochondrial| precursor (EC 1.1.99.5) (GPD-M) (GPDH-M) (mtGPD) Length = 727 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 14/56 (25%) Frame = +2 Query: 323 HMVPPGWRQEENKGMV--RTEDGR------WALLQL------PRDVEAHPVPDDID 448 H+V PG+ E+ G++ T DGR W + + P DV HP+P + D Sbjct: 316 HIVMPGYYSPESMGLLDPATSDGRVIFFLPWQKMTIAGTTDTPTDVTHHPIPSEED 371 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,695,064 Number of Sequences: 219361 Number of extensions: 1831714 Number of successful extensions: 5301 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 5068 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5296 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
