>gb|BT018131.1| Zea mays clone EL01N0554D08.c mRNA sequence
          Length = 1060

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 94/110 (85%)
 Strand = Plus / Plus

                                                                       
Query: 275 agggacccggcgctggtgaacaaggccatcgactttcttagagacgagcacatggtgccc 334
           |||||||| ||||||||||||||| ||| |||||| ||  | || || ||||||||||| 
Sbjct: 560 agggaccccgcgctggtgaacaagtccaccgacttcctccgggaggaccacatggtgccg 619

                                                             
Query: 335 ccagggtggcggcaggaggagaacaagggcatggtgaggacggaggacgg 384
           || | ||||   |||| |||||||||||||||||||||||||||||||||
Sbjct: 620 cccgtgtggtaccaggcggagaacaagggcatggtgaggacggaggacgg 669



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 198 gctaccacaatctggaggcgcacctccacctgctgga 234
           |||||||||| |||||||||||||| |||||||||||
Sbjct: 483 gctaccacaacctggaggcgcacctgcacctgctgga 519



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 17  aacgtgcacgacatggtgcccaaggtgcccgg 48
           |||||||||||||  |||||||||||||||||
Sbjct: 302 aacgtgcacgacagcgtgcccaaggtgcccgg 333

>gb|AY112551.1| Zea mays CL8419_1 mRNA sequence
          Length = 655

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                       
Query: 289 ggtgaacaaggccatcgactttcttagagacgagcacatggtgcccccagggtggcggca 348
           |||||||||| ||| |||||| ||  | || || ||||||||||| || | ||||   ||
Sbjct: 471 ggtgaacaagtccaccgacttcctccgggaggaccacatggtgccgcccgtgtggtacca 412

                                               
Query: 349 ggaggagaacaagggcatggtgaggacggaggacgg 384
           || |||||||||||||||||||||||||||||||||
Sbjct: 411 ggcggagaacaagggcatggtgaggacggaggacgg 376



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                
Query: 198 gctaccacaatctggaggcgcacctccacctgctgga 234
           |||||||||| |||||||||||||| |||||||||||
Sbjct: 562 gctaccacaacctggaggcgcacctgcacctgctgga 526

>gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01,
             complete sequence
          Length = 88352

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                         
Query: 278   gacccggcgctggtgaacaaggccatcgactttcttagagacgagcacatggtgccccca 337
             |||||||||||||||||||||||   |||||| || |  ||| | |||   |||||||| 
Sbjct: 42245 gacccggcgctggtgaacaaggcgtgcgacttcctcaaggaccaccactgcgtgcccccg 42186

                                             
Query: 338   gggtggcggcaggaggagaacaagggcatggt 369
              | ||||| ||||| |||||||||||||||||
Sbjct: 42185 tgctggcgccaggacgagaacaagggcatggt 42154

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                            
Query: 278      gacccggcgctggtgaacaaggccatcgactttcttagagacgagcacatggtgccccca 337
                |||||||||||||||||||||||   |||||| || |  ||| | |||   |||||||| 
Sbjct: 18736842 gacccggcgctggtgaacaaggcgtgcgacttcctcaaggaccaccactgcgtgcccccg 18736783

                                                
Query: 338      gggtggcggcaggaggagaacaagggcatggt 369
                 | ||||| ||||| |||||||||||||||||
Sbjct: 18736782 tgctggcgccaggacgagaacaagggcatggt 18736751

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 75      cggcggtgctgctgcgggtggcggacatgc 104
               |||||| ||||| |||||||||||||||||
Sbjct: 3214376 cggcggcgctgcggcgggtggcggacatgc 3214347

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 79      ggtgctgctgcgggtggcggac 100
               ||||||||||||||||||||||
Sbjct: 1094642 ggtgctgctgcgggtggcggac 1094663



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 79      ggtgctgctgcgggtggcgg 98
               ||||||||||||||||||||
Sbjct: 2682999 ggtgctgctgcgggtggcgg 2682980

>gb|AC119573.9| Mus musculus chromosome 15, clone RP23-75H23, complete sequence
          Length = 216297

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 604   gtgtgtaactgttttgtgtct 624
             |||||||||||||||||||||
Sbjct: 85474 gtgtgtaactgttttgtgtct 85454

>gb|AC009093.10| Homo sapiens chromosome 16 clone RP11-426C22, complete sequence
          Length = 207997

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 619    gtgtctttttggtcctttagctact 643
              ||||||||||||||||||| |||||
Sbjct: 187254 gtgtctttttggtcctttatctact 187230

>gb|AC120570.5| Rattus norvegicus 1 BAC CH230-96N8 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 227607

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 578    ctaaatgttttccatgttata 598
              |||||||||||||||||||||
Sbjct: 181738 ctaaatgttttccatgttata 181758

>gb|AC138512.4| Homo sapiens chromosome 16 clone RP11-93B18, complete sequence
          Length = 159064

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 619   gtgtctttttggtcctttagctact 643
             ||||||||||||||||||| |||||
Sbjct: 59915 gtgtctttttggtcctttatctact 59939

>gb|AC068716.8|AC068716 Homo sapiens chromosome 15 clone RP11-6L16 map 15q15, complete sequence
          Length = 159720

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 574   taagctaaatgttttccatgttata 598
             ||||||||||||||| |||||||||
Sbjct: 86846 taagctaaatgttttacatgttata 86870

>gb|AC136837.1| Homo sapiens chromosome 16 clone RP11-483N11, complete sequence
          Length = 65756

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 619   gtgtctttttggtcctttagctact 643
             ||||||||||||||||||| |||||
Sbjct: 27921 gtgtctttttggtcctttatctact 27897

>ref|XM_585435.2| PREDICTED: Bos taurus similar to Collagen alpha 2(IV) chain precursor
            (LOC508632), mRNA
          Length = 10374

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 77   gcggtgctgctgcgggtggc 96
            ||||||||||||||||||||
Sbjct: 2002 gcggtgctgctgcgggtggc 1983

>gb|AY533007.1| Tremolecia atrata voucher J. Buschbom 1.9.2001-20 (F) large subunit
           ribosomal RNA gene, partial sequence
          Length = 1895

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 219 acctccacctgctggatgga 238
           ||||||||||||||||||||
Sbjct: 978 acctccacctgctggatgga 997

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 77      gcggtgctgctgcgggtggc 96
               ||||||||||||||||||||
Sbjct: 3185789 gcggtgctgctgcgggtggc 3185770

>ref|XM_807516.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
            (DGF-1) (Tc00.1047053508159.40) partial mRNA
          Length = 10449

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 77   gcggtgctgctgcgggtggcggac 100
            |||| |||||||||||||||||||
Sbjct: 3244 gcggggctgctgcgggtggcggac 3267

>gb|AC113554.9| Homo sapiens chromosome 17, clone CTD-2501B8, complete sequence
          Length = 179509

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 342    ggcggcaggaggagaacaag 361
              ||||||||||||||||||||
Sbjct: 166896 ggcggcaggaggagaacaag 166877

>ref|XM_816342.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
            (DGF-1) (Tc00.1047053508163.190) partial mRNA
          Length = 10455

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 77   gcggtgctgctgcgggtggcggac 100
            |||| |||||||||||||||||||
Sbjct: 3238 gcggggctgctgcgggtggcggac 3261

>gb|AC089999.20| Homo sapiens 12 BAC RP11-545P7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 199522

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 473    cttgttctcaagaaagatg-gtgcataa 499
              ||||||||||||||||||| ||||||||
Sbjct: 147360 cttgttctcaagaaagatgagtgcataa 147387

>ref|XM_815643.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
            (DGF-1) (Tc00.1047053510275.130) partial mRNA
          Length = 10449

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 77   gcggtgctgctgcgggtggcggac 100
            |||| |||||||||||||||||||
Sbjct: 3235 gcggggctgctgcgggtggcggac 3258

>emb|BX649546.11| Zebrafish DNA sequence from clone DKEY-27C18 in linkage group 3,
             complete sequence
          Length = 124731

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 516   aaaacaatgaaaatctttgcagtt 539
             ||||| ||||||||||||||||||
Sbjct: 27587 aaaactatgaaaatctttgcagtt 27610

>gb|AF384336.1| Thermopsis montana internal transcribed spacer 1, complete sequence
          Length = 237

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  cggtgctgctgcgggtggcg 97
           ||||||||||||||||||||
Sbjct: 201 cggtgctgctgcgggtggcg 220

>gb|AC092867.7| Homo sapiens 12p BAC RP11-100C20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 195583

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 569   ggaattaagctaaatgtttt 588
             ||||||||||||||||||||
Sbjct: 15676 ggaattaagctaaatgtttt 15695

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     cggcggtgctgctgcgggtggcgg 98
              |||||||||||||| |||||||||
Sbjct: 553201 cggcggtgctgctgggggtggcgg 553224

>gb|AC023796.22| Homo sapiens 12p BAC RP11-625L16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 173342

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 569   ggaattaagctaaatgtttt 588
             ||||||||||||||||||||
Sbjct: 39406 ggaattaagctaaatgtttt 39425

>gb|AC013726.7| Homo sapiens BAC clone RP11-400N9 from 2, complete sequence
          Length = 214647

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    acaagggcatggtgaggacg 376
              ||||||||||||||||||||
Sbjct: 111324 acaagggcatggtgaggacg 111305

>gb|AF007468.1|AF007468 Thermopsis rhombifolia var. ovata internal transcribed spacer 1,
           5.8S ribosomal RNA gene; and internal transcribed spacer
           2, complete sequence
          Length = 626

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  cggtgctgctgcgggtggcg 97
           ||||||||||||||||||||
Sbjct: 199 cggtgctgctgcgggtggcg 218

>gb|AC005828.1|AC005828 Homo sapiens chromosome 17, clone hRPK.269_G_24, complete sequence
          Length = 163685

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    ggcggcaggaggagaacaag 361
              ||||||||||||||||||||
Sbjct: 141811 ggcggcaggaggagaacaag 141830

>gb|U29460.1|HUMCYT01 Human cytochrome b561 gene, exon 1
          Length = 5597

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  ggcggcaggaggagaacaag 361
            ||||||||||||||||||||
Sbjct: 3679 ggcggcaggaggagaacaag 3660

>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 268     cggtggaagggacccggcgc 287
               ||||||||||||||||||||
Sbjct: 4139500 cggtggaagggacccggcgc 4139481


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,792,860
Number of Sequences: 3902068
Number of extensions: 4792860
Number of successful extensions: 101318
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 100837
Number of HSP's gapped (non-prelim): 482
length of query: 643
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 620
effective length of database: 17,143,297,704
effective search space: 10628844576480
effective search space used: 10628844576480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)