ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags21i12 |
|---|---|
| Clone Library Name | barley_pub |
>HS105_PONPY (Q5R606) Heat-shock protein 105 kDa (Heat shock 110 kDa protein)| Length = 858 Score = 34.7 bits (78), Expect = 0.20 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 4/110 (3%) Frame = +1 Query: 217 SECKTIERACQEVMGYADTDV---AEFVYTNKPSVD-QLIKFVCKDITKACAANPPPVPK 384 SE K +E++ EVM + + + A+ P V Q IK K++ C Sbjct: 746 SEMKKVEKSVNEVMEWMNNVMNAQAKESLDQDPVVRAQEIKTKIKELNNTC--------- 796 Query: 385 DRVPGEPFATKPSKDAEMEKIMRSMEGMPGAPNMKMYSRDDLMKNNFGVE 534 EP T+P E K+ R+ P PN+ D KNNFG E Sbjct: 797 -----EPVVTQPKPKIESPKLERT----PNGPNIDKKEEDLEDKNNFGAE 837
>HS105_HUMAN (Q92598) Heat-shock protein 105 kDa (Heat shock 110 kDa protein)| (Antigen NY-CO-25) Length = 858 Score = 34.7 bits (78), Expect = 0.20 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 4/110 (3%) Frame = +1 Query: 217 SECKTIERACQEVMGYADTDV---AEFVYTNKPSVD-QLIKFVCKDITKACAANPPPVPK 384 SE K +E++ EVM + + + A+ P V Q IK K++ C Sbjct: 746 SEMKKVEKSVNEVMEWMNNVMNAQAKKSLDQDPVVRAQEIKTKIKELNNTC--------- 796 Query: 385 DRVPGEPFATKPSKDAEMEKIMRSMEGMPGAPNMKMYSRDDLMKNNFGVE 534 EP T+P E K+ R+ P PN+ D KNNFG E Sbjct: 797 -----EPVVTQPKPKIESPKLERT----PNGPNIDKKEEDLEDKNNFGAE 837
>Y1369_AQUAE (O67381) Hypothetical protein aq_1369| Length = 260 Score = 34.3 bits (77), Expect = 0.26 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 7/121 (5%) Frame = +1 Query: 154 DIVEKGDRLELVDQDEEGHCNSECKTIERACQEVMGYA-----DTDVAEFVYTNKPSVDQ 318 D VE G++L + EEG + +E ++++ Y +DV ++ P V Sbjct: 134 DFVEGGNKLIAAIKTEEGISTYDQLKLEEMMKKMVRYPRVVVYSSDVLTYIKDIYPDVQS 193 Query: 319 LIKFVCKDITKACAANPPPVPKDRVPGEPFATKPSKDAEMEKIMRSMEGMPGAP--NMKM 492 + ++I K + P ++ G +T K +EK++++ +PG N+K Sbjct: 194 KAYVIAREIAKETGSAPELEELGKIYGVDTSTLEGKLELIEKLLQNPVKLPGGKEVNLKP 253 Query: 493 Y 495 Y Sbjct: 254 Y 254
>MYO1_YEAST (P08964) Myosin-1 (Type II myosin)| Length = 1928 Score = 32.3 bits (72), Expect = 0.97 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +1 Query: 313 DQLIKFVCKDITKACAANPPPVPKDRVPGEPFATKPSKDAEMEKIMRSME 462 DQ IK K + K P +P D + EP P K++++ K+M ++ Sbjct: 1276 DQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLDNCPDKESDINKLMLEVD 1325
>TAF6_XENLA (Q91857) Transcription initiation factor TFIID subunit 6| (Transcription initiation factor TFIID 70 kDa subunit) (TAF(II)70) (TAFII-70) (TAFII-60) (TAFII60) Length = 618 Score = 32.0 bits (71), Expect = 1.3 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 5/74 (6%) Frame = +1 Query: 268 DTDVAEFVYTNKPSV--DQLIK---FVCKDITKACAANPPPVPKDRVPGEPFATKPSKDA 432 +TD+++ + T P V D +K + + A NPPPVPK++ E AT+P K A Sbjct: 109 ETDLSDIISTPLPRVPLDVSLKAHWLSIEGVQPAIPENPPPVPKEQQKTE--ATEPLKVA 166 Query: 433 EMEKIMRSMEGMPG 474 + + EG+PG Sbjct: 167 KPGQ----EEGLPG 176
>POMT2_DROME (Q9W5D4) Protein O-mannosyl-transferase 2 (EC 2.4.1.109)| (Dolichyl-phosphate-mannose--protein mannosyltransferase 2) (dPOMT2) Length = 765 Score = 32.0 bits (71), Expect = 1.3 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -3 Query: 381 WNWWWIRSTCFRYIFADKLYKLIN*RLIC 295 WNWW + +T F FA + YK+ IC Sbjct: 37 WNWWLLLATVFLVTFATRFYKVTEPDHIC 65
>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)| Length = 2798 Score = 30.0 bits (66), Expect = 4.8 Identities = 17/57 (29%), Positives = 22/57 (38%) Frame = +1 Query: 349 KACAANPPPVPKDRVPGEPFATKPSKDAEMEKIMRSMEGMPGAPNMKMYSRDDLMKN 519 K A + P PK + G P K D E + EG P P K R + K+ Sbjct: 704 KQKAESRPETPKQKSEGRPETPKQKGDGRPETPKQKSEGRPETPKQKGEGRPETPKH 760
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +1 Query: 337 KDITKACAANPPPVPKDRVPGEPFATKPSKDAEMEKIMRSMEGMPG 474 K++T + A PP +P P AT P+++ EME+ EG G Sbjct: 426 KEVTASVA--PPTIPSATPATAPSATSPAQEEEMEEEEEEEEGEAG 469
>Y538_DESPS (Q6AQV6) UPF0078 membrane protein DP0538| Length = 197 Score = 29.3 bits (64), Expect = 8.2 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -1 Query: 491 IFMFGAPGMPSIDLIIFSISASFDGFVAKGS 399 +F+F +P +I L +F+ S F GFV+ GS Sbjct: 114 VFLFLSPAAIAISLGVFAASVFFSGFVSVGS 144
>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 Length = 863 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +1 Query: 361 ANPPPVPKDRVPGEPFATKPSKDAEMEKIMRSMEGMPGAP 480 A P P+P PG P A+ P+ + S G+PG+P Sbjct: 733 APPGPLPPAASPGPPAASPPAAPSSPRAPRTSPYGVPGSP 772
>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) (Hyperpolarization-activated cation channel 1) (HAC-1) Length = 863 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +1 Query: 361 ANPPPVPKDRVPGEPFATKPSKDAEMEKIMRSMEGMPGAP 480 A P P+P PG P A+ P+ + S G+PG+P Sbjct: 733 APPGPLPPAASPGPPAASPPAAPSSPRAPRTSPYGVPGSP 772 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,367,217 Number of Sequences: 219361 Number of extensions: 1489915 Number of successful extensions: 4074 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3899 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4070 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
