ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags21h10 |
|---|---|
| Clone Library Name | barley_pub |
>ATP7_ARATH (Q9SJ12) Probable ATP synthase 24 kDa subunit, mitochondrial| precursor (EC 3.6.3.14) Length = 240 Score = 136 bits (343), Expect = 3e-32 Identities = 70/141 (49%), Positives = 95/141 (67%), Gaps = 2/141 (1%) Frame = +2 Query: 110 VSRSRQLYSVQAALANGGVTQVRSFAKEAA--PVSGDDLLKGIFFEVKKKFETALGVLKK 283 +SRS+QL L VR+FAKEAA GD++LKG+FF++K KF+ A+ +L+K Sbjct: 8 LSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQAAVDILRK 67 Query: 284 EKITIDPDDPTAVANYAQVMRTVREKADLLSDSQRIKYTIETFTKGIPDARTYLDTLQQL 463 EKIT+DP+DP AV YA VM+T+R+KAD+ S+SQRIK+ I+T T+ IPDAR YL LQ++ Sbjct: 68 EKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQEI 127 Query: 464 RKKNGLXXXXXXXXXXXXALE 526 R + GL ALE Sbjct: 128 RTRRGLTDELGAEAMMFEALE 148
>ATP7_SOLTU (P80496) ATP synthase 27 kDa subunit, mitochondrial (EC 3.6.3.14)| (Fragment) Length = 33 Score = 38.1 bits (87), Expect = 0.015 Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 3/33 (9%) Frame = +2 Query: 185 AKEAAP---VSGDDLLKGIFFEVKKKFETALGV 274 AKEAA + GD +LK IF+EVK K ETA+GV Sbjct: 1 AKEAAAPTTLKGDQVLKDIFYEVKNKLETAIGV 33
>ATP7_SPIOL (P80088) ATP synthase 28 kDa subunit, mitochondrial (EC 3.6.3.14)| (Fragment) Length = 32 Score = 35.8 bits (81), Expect = 0.073 Identities = 15/21 (71%), Positives = 19/21 (90%) Frame = +2 Query: 203 VSGDDLLKGIFFEVKKKFETA 265 + G+++LKGIF EVKKKFETA Sbjct: 12 LKGNEMLKGIFLEVKKKFETA 32
>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) Length = 1505 Score = 32.0 bits (71), Expect = 1.1 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 5/100 (5%) Frame = +2 Query: 188 KEAAPVSGDDLLKGIFFEV----KKKFETALGVLKKEKITIDPDDPTAVANYAQVMRT-V 352 K+ AP LLK E+ K+ E L K ID DP + Q ++ V Sbjct: 51 KQVAP-----LLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKV 105 Query: 353 REKADLLSDSQRIKYTIETFTKGIPDARTYLDTLQQLRKK 472 + D+ +++Q+++ T+E + K + + T++ L++K Sbjct: 106 QRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEK 145
>CASP_PONPY (Q5R8V1) Protein CASP| Length = 678 Score = 32.0 bits (71), Expect = 1.1 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 5/100 (5%) Frame = +2 Query: 188 KEAAPVSGDDLLKGIFFEV----KKKFETALGVLKKEKITIDPDDPTAVANYAQVMRT-V 352 K+ AP LLK E+ K+ E L K ID DP + Q ++ V Sbjct: 62 KQVAP-----LLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKV 116 Query: 353 REKADLLSDSQRIKYTIETFTKGIPDARTYLDTLQQLRKK 472 + D+ +++Q+++ T+E + K + + T++ L++K Sbjct: 117 QRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEK 156
>CASP_HUMAN (Q13948) Protein CASP| Length = 678 Score = 32.0 bits (71), Expect = 1.1 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 5/100 (5%) Frame = +2 Query: 188 KEAAPVSGDDLLKGIFFEV----KKKFETALGVLKKEKITIDPDDPTAVANYAQVMRT-V 352 K+ AP LLK E+ K+ E L K ID DP + Q ++ V Sbjct: 62 KQVAP-----LLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKV 116 Query: 353 REKADLLSDSQRIKYTIETFTKGIPDARTYLDTLQQLRKK 472 + D+ +++Q+++ T+E + K + + T++ L++K Sbjct: 117 QRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEK 156
>YO26_CAEEL (P34676) Putative serine protease Z688.6 precursor (EC 3.4.-.-)| Length = 507 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +3 Query: 102 LASYPAPASYILSKLLWPMEVSLKSAHLP-RRQLLSAEMTY 221 + +YP P S++ S WP++ + KSA P + Q SAE Y Sbjct: 284 MVNYPYPTSFLSSLPAWPVKEACKSASQPGKTQEESAEQLY 324
>LOLD_RICPR (Q9ZCM4) Lipoprotein-releasing system ATP-binding protein lolD| Length = 221 Score = 31.2 bits (69), Expect = 1.8 Identities = 13/49 (26%), Positives = 28/49 (57%) Frame = -1 Query: 511 HHILNTHIIYKSILFPELLKGIQVRPSIRDALRESLNSIFNSLRIRKKI 365 HH+L ++++ P L++G+ + +I+DA + I + L + KK+ Sbjct: 91 HHLLKDFTALENVIIPRLIRGLDQKEAIKDATK-----ILDDLGLEKKL 134
>CUTL1_MOUSE (P53564) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) (Homeobox protein Cux) Length = 1515 Score = 31.2 bits (69), Expect = 1.8 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Frame = +2 Query: 188 KEAAPVSGDDLLKGIFFEV----KKKFETALGVLKKEKITIDPDDPTAVANYAQVMRT-V 352 K+ AP LLK E+ K+ E L K ID DP + Q + V Sbjct: 51 KQVAP-----LLKSFQGEIDALSKRSKEAEAAFLTVYKRLIDVPDPVPALDVGQQLEIKV 105 Query: 353 REKADLLSDSQRIKYTIETFTKGIPDARTYLDTLQQLRKK 472 + D+ +++Q+++ T+E + K + + T++ L++K Sbjct: 106 QRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEK 145
>CASP_MOUSE (P70403) Protein CASP| Length = 678 Score = 31.2 bits (69), Expect = 1.8 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Frame = +2 Query: 188 KEAAPVSGDDLLKGIFFEV----KKKFETALGVLKKEKITIDPDDPTAVANYAQVMRT-V 352 K+ AP LLK E+ K+ E L K ID DP + Q + V Sbjct: 62 KQVAP-----LLKSFQGEIDALSKRSKEAEAAFLTVYKRLIDVPDPVPALDVGQQLEIKV 116 Query: 353 REKADLLSDSQRIKYTIETFTKGIPDARTYLDTLQQLRKK 472 + D+ +++Q+++ T+E + K + + T++ L++K Sbjct: 117 QRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEK 156
>SYP71_ARATH (Q9SF29) Syntaxin-71 (AtSYP71)| Length = 266 Score = 30.8 bits (68), Expect = 2.4 Identities = 20/65 (30%), Positives = 34/65 (52%) Frame = +2 Query: 197 APVSGDDLLKGIFFEVKKKFETALGVLKKEKITIDPDDPTAVANYAQVMRTVREKADLLS 376 A +SGDD ++ + + ETAL K E +T + + AVA A++ RT ++ + Sbjct: 28 ANISGDDAFARLYGAFETQIETALE--KAELVTKEKNRAAAVAMNAEIRRTKARLSEEVP 85 Query: 377 DSQRI 391 QR+ Sbjct: 86 KLQRL 90
>POP6_YEAST (P53218) Ribonucleases P/MRP protein subunit POP6 (EC 3.1.26.5)| (RNases P/MRP 18.2 kDa subunit) (RNA-processing protein POP6) Length = 158 Score = 30.0 bits (66), Expect = 4.0 Identities = 14/46 (30%), Positives = 27/46 (58%) Frame = -1 Query: 478 SILFPELLKGIQVRPSIRDALRESLNSIFNSLRIRKKICLFSYSPH 341 SI + + K ++ S+ + L + +N SL +++ +C+FSY PH Sbjct: 43 SIQYHGISKNDNIKKSV-NKLDKQINMADRSLGLQQVVCIFSYGPH 87
>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 29.6 bits (65), Expect = 5.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +1 Query: 70 PPRTRSHGARRSPRIPLPP 126 PP +RS G RR PR+P P Sbjct: 383 PPSSRSRGGRRDPRLPAAP 401
>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 29.6 bits (65), Expect = 5.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +1 Query: 70 PPRTRSHGARRSPRIPLPP 126 PP +RS G RR PR+P P Sbjct: 383 PPSSRSRGGRRDPRLPAAP 401
>GLIS3_MOUSE (Q6XP49) Zinc finger protein GLIS3 (GLI-similar 3)| Length = 780 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 265 TWCP*EGEDHDRPR*PNSSC*LCPSHEDC 351 T+CP D R P+ SC + PS EDC Sbjct: 682 TFCPPHYPDSQRTVPPSGSCSMVPSFEDC 710
>RYK2_DROME (Q9V422) Tyrosine-protein kinase Dnt precursor (EC 2.7.10.1)| (Protein doughnut) Length = 584 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -1 Query: 448 IQVRPSIRDALRESLNSIFNSLRIRKKICLFSYSPHDL 335 + V S+ L SLN++ + + RKKICL + S DL Sbjct: 152 VDVTVSLEVVLNRSLNNVTHLVFRRKKICLMNDSAEDL 189
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = +2 Query: 281 KEKITIDPDDPTAVANYAQVMRTVREKADLLSDSQRIKYTIETFTKGI-PDARTYLDT 451 ++ T DPD + ++ Q+ E+ L + + Y+I+ +GI P RTY+DT Sbjct: 237 RKPTTTDPDSESRLSLVEQIYVPRDERFGHLKMADFLGYSIKAIAEGIVPAIRTYVDT 294
>MATK_SPAPE (Q95F35) Maturase K (Intron maturase)| Length = 513 Score = 28.9 bits (63), Expect = 9.0 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Frame = -2 Query: 315 VGSSGSIVIFSFLRTPSAVSNFFFTSKNMP-FNRSSPLT---GAASLANERT*VTPPLAK 148 +G S+ I +FL + NFF M F+ ++P T G+ S A T + P++K Sbjct: 335 LGYRSSVPINTFLVRNQMLENFFLIDTRMKKFDTTAPATPLIGSLSKAQFCTGLGHPISK 394 Query: 147 AAWTE 133 WT+ Sbjct: 395 PIWTD 399 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,680,591 Number of Sequences: 219361 Number of extensions: 1174251 Number of successful extensions: 3850 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3705 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3844 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
