| Clone Name | bags21g15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY109734.1| Zea mays CL29271_1 mRNA sequence Length = 1457 Score = 226 bits (114), Expect = 7e-56 Identities = 201/230 (87%) Strand = Plus / Plus Query: 36 gatttttctgatgtcgcggaacagcatcacctgcaagcacttcagaaggcaatgatcatt 95 ||||| |||||||| ||| | || |||||||||||| ||||||| ||||| ||| | ||| Sbjct: 997 gatttctctgatgttgcgcatcaacatcacctgcaatcacttcaaaaggctatggttatt 1056 Query: 96 cagtggctttgcttcacaccaccatcctcaattccaggctttgagatgatcacagggaaa 155 ||||||||||||||||||||||||||||| ||||||| |||| | ||||||| ||||| Sbjct: 1057 cagtggctttgcttcacaccaccatcctcgattccagactttcaaatgatcagtgggaag 1116 Query: 156 cttctgatacgggcattgatgcatagcaacacactattcagagagttttccttaatatca 215 ||||||||||||||||||| |||||||| ||||| ||||| |||||||| | |||||| Sbjct: 1117 cttctgatacgggcattgacacatagcaatacactgttcagggagttttctctgatatca 1176 Query: 216 atgaggagagtccctgacctaccagtaggaccacataagttgcttgccat 265 ||||||||||||||||| ||||||| ||| ||||| |||||||||||||| Sbjct: 1177 atgaggagagtccctgagctaccagcagggccacacaagttgcttgccat 1226 Score = 89.7 bits (45), Expect = 1e-14 Identities = 135/165 (81%) Strand = Plus / Plus Query: 308 ggaagatcaagaggtttctgataacttagaagagtttgaagattggcacgaatattactc 367 |||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 1269 ggaagatccggaggtatctgataacttgccggagtttgaagattggcatgaatattactc 1328 Query: 368 cctggatgcaacataccggggttggcttagatgtgagatggagaattattccgtcccccc 427 ||| || || || ||||| ||||||||| | ||||||| |||| | || | || Sbjct: 1329 ccttgacgcgacttaccgcagttggcttaaaattgagatgatgaatgccgctgtttctcc 1388 Query: 428 tgaaatgctttcggcagaagaaaaggatcaagctgttgctgcagc 472 ||| |||||||||||||| ||||||| |||||||||||||||||| Sbjct: 1389 tgagatgctttcggcagaggaaaagggtcaagctgttgctgcagc 1433
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0090F16, complete sequence Length = 147341 Score = 210 bits (106), Expect = 4e-51 Identities = 157/174 (90%) Strand = Plus / Minus Query: 180 agcaacacactattcagagagttttccttaatatcaatgaggagagtccctgacctacca 239 ||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||||| Sbjct: 143363 agcaacacactattcagagagttttccctgatatcaatgaggagagttcctgagctacca 143304 Query: 240 gtaggaccacataagttgcttgccatccttgctgaaccattgaaacaaaaggaaaattta 299 ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 143303 gtaggaccacacaagttgcttgccatcctggctgaaccattgaaacaaaaagaaaattta 143244 Query: 300 ttttcgctggaagatcaagaggtttctgataacttagaagagtttgaagattgg 353 |||| || ||||||| ||||| |||||||| ||| ||||||||||||||| Sbjct: 143243 atttcactcgaagatcctgaggtatctgataatttacgggagtttgaagattgg 143190 Score = 139 bits (70), Expect = 1e-29 Identities = 130/150 (86%) Strand = Plus / Minus Query: 357 gaatattactccctggatgcaacataccggggttggcttagatgtgagatggagaattat 416 |||||||||||||||||||| || |||||| ||||||||| || ||||||||||||| Sbjct: 143069 gaatattactccctggatgctacttaccggagttggcttaaatttgagatggagaatgcg 143010 Query: 417 tccgtcccccctgaaatgctttcggcagaagaaaaggatcaagctgttgctgcagcgata 476 || | | |||||||||||||| |||||||||||| |||||||||||||||||||| | Sbjct: 143009 tctatttctcctgaaatgctttcagcagaagaaaagagtcaagctgttgctgcagcgaaa 142950 Query: 477 caaactctggagttagcattcttgttatta 506 |||| ||||||||||||||||| |||||| Sbjct: 142949 gaaacgctggagttagcattcttattatta 142920 Score = 123 bits (62), Expect = 8e-25 Identities = 125/146 (85%) Strand = Plus / Minus Query: 33 gaagatttttctgatgtcgcggaacagcatcacctgcaagcacttcagaaggcaatgatc 92 |||||| ||| |||||| |||||| ||||||| | |||||||| ||||| |||| | || Sbjct: 143671 gaagatatttttgatgttgcggaaatgcatcacttacaagcactccagaaagcaacggtc 143612 Query: 93 attcagtggctttgcttcacaccaccatcctcaattccaggctttgagatgatcacaggg 152 ||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||| || Sbjct: 143611 attcagtggctttgcttcacaccgccatcctcgattccagattttcagatgatcagtgga 143552 Query: 153 aaacttctgatacgggcattgatgca 178 || ||||||||||||||| ||||||| Sbjct: 143551 aagcttctgatacgggcactgatgca 143526 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Minus Query: 522 ccatggttaaatgctatcgagacaagcccatttgagtcgtcagagcttgttttccttgag 581 ||||||||||||||| |||||| || ||| | ||| | ||||| | |||||| |||||| Sbjct: 142773 ccatggttaaatgctgtcgagagtagtccaatcgagccctcagaacatgtttttcttgag 142714 Query: 582 ttgcatgcaacagcaatactctgtctaccttctggggaatgcatgacaccagatgcaaca 641 || |||||||| ||||||||||| |||||||||||||| |||||| |||||||||||| Sbjct: 142713 ttacatgcaactgcaatactctgcctaccttctggggagtgcatgctgccagatgcaaca 142654 Query: 642 tcatgcac 649 |||||||| Sbjct: 142653 tcatgcac 142646
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 210 bits (106), Expect = 4e-51 Identities = 157/174 (90%) Strand = Plus / Plus Query: 180 agcaacacactattcagagagttttccttaatatcaatgaggagagtccctgacctacca 239 ||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||||| Sbjct: 24679125 agcaacacactattcagagagttttccctgatatcaatgaggagagttcctgagctacca 24679184 Query: 240 gtaggaccacataagttgcttgccatccttgctgaaccattgaaacaaaaggaaaattta 299 ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 24679185 gtaggaccacacaagttgcttgccatcctggctgaaccattgaaacaaaaagaaaattta 24679244 Query: 300 ttttcgctggaagatcaagaggtttctgataacttagaagagtttgaagattgg 353 |||| || ||||||| ||||| |||||||| ||| ||||||||||||||| Sbjct: 24679245 atttcactcgaagatcctgaggtatctgataatttacgggagtttgaagattgg 24679298 Score = 139 bits (70), Expect = 1e-29 Identities = 130/150 (86%) Strand = Plus / Plus Query: 357 gaatattactccctggatgcaacataccggggttggcttagatgtgagatggagaattat 416 |||||||||||||||||||| || |||||| ||||||||| || ||||||||||||| Sbjct: 24679419 gaatattactccctggatgctacttaccggagttggcttaaatttgagatggagaatgcg 24679478 Query: 417 tccgtcccccctgaaatgctttcggcagaagaaaaggatcaagctgttgctgcagcgata 476 || | | |||||||||||||| |||||||||||| |||||||||||||||||||| | Sbjct: 24679479 tctatttctcctgaaatgctttcagcagaagaaaagagtcaagctgttgctgcagcgaaa 24679538 Query: 477 caaactctggagttagcattcttgttatta 506 |||| ||||||||||||||||| |||||| Sbjct: 24679539 gaaacgctggagttagcattcttattatta 24679568 Score = 123 bits (62), Expect = 8e-25 Identities = 125/146 (85%) Strand = Plus / Plus Query: 33 gaagatttttctgatgtcgcggaacagcatcacctgcaagcacttcagaaggcaatgatc 92 |||||| ||| |||||| |||||| ||||||| | |||||||| ||||| |||| | || Sbjct: 24678817 gaagatatttttgatgttgcggaaatgcatcacttacaagcactccagaaagcaacggtc 24678876 Query: 93 attcagtggctttgcttcacaccaccatcctcaattccaggctttgagatgatcacaggg 152 ||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||| || Sbjct: 24678877 attcagtggctttgcttcacaccgccatcctcgattccagattttcagatgatcagtgga 24678936 Query: 153 aaacttctgatacgggcattgatgca 178 || ||||||||||||||| ||||||| Sbjct: 24678937 aagcttctgatacgggcactgatgca 24678962 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Plus Query: 522 ccatggttaaatgctatcgagacaagcccatttgagtcgtcagagcttgttttccttgag 581 ||||||||||||||| |||||| || ||| | ||| | ||||| | |||||| |||||| Sbjct: 24679715 ccatggttaaatgctgtcgagagtagtccaatcgagccctcagaacatgtttttcttgag 24679774 Query: 582 ttgcatgcaacagcaatactctgtctaccttctggggaatgcatgacaccagatgcaaca 641 || |||||||| ||||||||||| |||||||||||||| |||||| |||||||||||| Sbjct: 24679775 ttacatgcaactgcaatactctgcctaccttctggggagtgcatgctgccagatgcaaca 24679834 Query: 642 tcatgcac 649 |||||||| Sbjct: 24679835 tcatgcac 24679842
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 210 bits (106), Expect = 4e-51 Identities = 157/174 (90%) Strand = Plus / Plus Query: 180 agcaacacactattcagagagttttccttaatatcaatgaggagagtccctgacctacca 239 ||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||||| Sbjct: 24990795 agcaacacactattcagagagttttccctgatatcaatgaggagagttcctgagctacca 24990854 Query: 240 gtaggaccacataagttgcttgccatccttgctgaaccattgaaacaaaaggaaaattta 299 ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 24990855 gtaggaccacacaagttgcttgccatcctggctgaaccattgaaacaaaaagaaaattta 24990914 Query: 300 ttttcgctggaagatcaagaggtttctgataacttagaagagtttgaagattgg 353 |||| || ||||||| ||||| |||||||| ||| ||||||||||||||| Sbjct: 24990915 atttcactcgaagatcctgaggtatctgataatttacgggagtttgaagattgg 24990968 Score = 139 bits (70), Expect = 1e-29 Identities = 130/150 (86%) Strand = Plus / Plus Query: 357 gaatattactccctggatgcaacataccggggttggcttagatgtgagatggagaattat 416 |||||||||||||||||||| || |||||| ||||||||| || ||||||||||||| Sbjct: 24991089 gaatattactccctggatgctacttaccggagttggcttaaatttgagatggagaatgcg 24991148 Query: 417 tccgtcccccctgaaatgctttcggcagaagaaaaggatcaagctgttgctgcagcgata 476 || | | |||||||||||||| |||||||||||| |||||||||||||||||||| | Sbjct: 24991149 tctatttctcctgaaatgctttcagcagaagaaaagagtcaagctgttgctgcagcgaaa 24991208 Query: 477 caaactctggagttagcattcttgttatta 506 |||| ||||||||||||||||| |||||| Sbjct: 24991209 gaaacgctggagttagcattcttattatta 24991238 Score = 123 bits (62), Expect = 8e-25 Identities = 125/146 (85%) Strand = Plus / Plus Query: 33 gaagatttttctgatgtcgcggaacagcatcacctgcaagcacttcagaaggcaatgatc 92 |||||| ||| |||||| |||||| ||||||| | |||||||| ||||| |||| | || Sbjct: 24990487 gaagatatttttgatgttgcggaaatgcatcacttacaagcactccagaaagcaacggtc 24990546 Query: 93 attcagtggctttgcttcacaccaccatcctcaattccaggctttgagatgatcacaggg 152 ||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||| || Sbjct: 24990547 attcagtggctttgcttcacaccgccatcctcgattccagattttcagatgatcagtgga 24990606 Query: 153 aaacttctgatacgggcattgatgca 178 || ||||||||||||||| ||||||| Sbjct: 24990607 aagcttctgatacgggcactgatgca 24990632 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Plus Query: 522 ccatggttaaatgctatcgagacaagcccatttgagtcgtcagagcttgttttccttgag 581 ||||||||||||||| |||||| || ||| | ||| | ||||| | |||||| |||||| Sbjct: 24991385 ccatggttaaatgctgtcgagagtagtccaatcgagccctcagaacatgtttttcttgag 24991444 Query: 582 ttgcatgcaacagcaatactctgtctaccttctggggaatgcatgacaccagatgcaaca 641 || |||||||| ||||||||||| |||||||||||||| |||||| |||||||||||| Sbjct: 24991445 ttacatgcaactgcaatactctgcctaccttctggggagtgcatgctgccagatgcaaca 24991504 Query: 642 tcatgcac 649 |||||||| Sbjct: 24991505 tcatgcac 24991512
>gb|AC010420.11| Homo sapiens chromosome 5 clone CTD-2187J20, complete sequence Length = 88736 Score = 48.1 bits (24), Expect = 0.036 Identities = 24/24 (100%) Strand = Plus / Plus Query: 67 tgcaagcacttcagaaggcaatga 90 |||||||||||||||||||||||| Sbjct: 50847 tgcaagcacttcagaaggcaatga 50870
>ref|NM_180250.1| Arabidopsis thaliana unknown protein AT3G14120 transcript variant AT3G14120.2 mRNA, complete cds Length = 3596 Score = 44.1 bits (22), Expect = 0.57 Identities = 43/50 (86%) Strand = Plus / Plus Query: 573 ttccttgagttgcatgcaacagcaatactctgtctaccttctggggaatg 622 |||||||| ||||||||||| || || |||||| | |||||||| ||||| Sbjct: 2781 ttccttgaattgcatgcaactgcgatgctctgtttgccttctggtgaatg 2830 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 171 ttgatgcatagcaacacactattcagagagttt 203 |||||||| ||||||| ||| |||||||||||| Sbjct: 2385 ttgatgcacagcaacatacttttcagagagttt 2417
>ref|NM_112268.2| Arabidopsis thaliana unknown protein AT3G14120 transcript variant AT3G14120.1 mRNA, complete cds Length = 3668 Score = 44.1 bits (22), Expect = 0.57 Identities = 43/50 (86%) Strand = Plus / Plus Query: 573 ttccttgagttgcatgcaacagcaatactctgtctaccttctggggaatg 622 |||||||| ||||||||||| || || |||||| | |||||||| ||||| Sbjct: 2781 ttccttgaattgcatgcaactgcgatgctctgtttgccttctggtgaatg 2830 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 171 ttgatgcatagcaacacactattcagagagttt 203 |||||||| ||||||| ||| |||||||||||| Sbjct: 2385 ttgatgcacagcaacatacttttcagagagttt 2417
>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence Length = 3214944 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 328 ataacttagaagagtttgaaga 349 |||||||||||||||||||||| Sbjct: 1277874 ataacttagaagagtttgaaga 1277895
>emb|Z82209.2|HS428A13 Human DNA sequence from clone RP3-428A13 on chromosome X Contains a intracellular membrane-associated calcium-independent phospholipase A2 (IPLA2) pseudogene, complete sequence Length = 154235 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 282 aaacaaaaggaaaatttatttt 303 |||||||||||||||||||||| Sbjct: 129159 aaacaaaaggaaaatttatttt 129138
>gb|AY139761.1| Arabidopsis thaliana AT3g14120/MAG2_7 mRNA, complete cds Length = 3669 Score = 44.1 bits (22), Expect = 0.57 Identities = 43/50 (86%) Strand = Plus / Plus Query: 573 ttccttgagttgcatgcaacagcaatactctgtctaccttctggggaatg 622 |||||||| ||||||||||| || || |||||| | |||||||| ||||| Sbjct: 2781 ttccttgaattgcatgcaactgcgatgctctgtttgccttctggtgaatg 2830 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 171 ttgatgcatagcaacacactattcagagagttt 203 |||||||| ||||||| ||| |||||||||||| Sbjct: 2385 ttgatgcacagcaacatacttttcagagagttt 2417
>gb|BT006367.1| Arabidopsis thaliana AT3g14120/MAG2_7 gene, complete cds Length = 3234 Score = 44.1 bits (22), Expect = 0.57 Identities = 43/50 (86%) Strand = Plus / Plus Query: 573 ttccttgagttgcatgcaacagcaatactctgtctaccttctggggaatg 622 |||||||| ||||||||||| || || |||||| | |||||||| ||||| Sbjct: 2602 ttccttgaattgcatgcaactgcgatgctctgtttgccttctggtgaatg 2651 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 171 ttgatgcatagcaacacactattcagagagttt 203 |||||||| ||||||| ||| |||||||||||| Sbjct: 2206 ttgatgcacagcaacatacttttcagagagttt 2238
>emb|BX822747.1|CNS0A4PQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB61ZB11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2006 Score = 44.1 bits (22), Expect = 0.57 Identities = 43/50 (86%) Strand = Plus / Plus Query: 573 ttccttgagttgcatgcaacagcaatactctgtctaccttctggggaatg 622 |||||||| ||||||||||| || || |||||| | |||||||| ||||| Sbjct: 1175 ttccttgaattgcatgcaactgcgatgctctgtttgccttctggtgaatg 1224 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 171 ttgatgcatagcaacacactattcagagagttt 203 |||||||| ||||||| ||| |||||||||||| Sbjct: 779 ttgatgcacagcaacatacttttcagagagttt 811
>dbj|AP000600.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MAG2 Length = 73859 Score = 44.1 bits (22), Expect = 0.57 Identities = 43/50 (86%) Strand = Plus / Plus Query: 573 ttccttgagttgcatgcaacagcaatactctgtctaccttctggggaatg 622 |||||||| ||||||||||| || || |||||| | |||||||| ||||| Sbjct: 25121 ttccttgaattgcatgcaactgcgatgctctgtttgccttctggtgaatg 25170
>gb|U41557.1| Caenorhabditis elegans cosmid C50F7, complete sequence Length = 31414 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 278 attgaaacaaaaggaaaattt 298 ||||||||||||||||||||| Sbjct: 18746 attgaaacaaaaggaaaattt 18726
>gb|AC117199.3| Mus musculus BAC clone RP23-134L22 from 10, complete sequence Length = 210514 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 actattcagagagttttcctt 208 ||||||||||||||||||||| Sbjct: 173868 actattcagagagttttcctt 173848
>ref|XM_644945.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (250.t00020) partial mRNA Length = 648 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 276 ccattgaaacaaaaggaaaat 296 ||||||||||||||||||||| Sbjct: 529 ccattgaaacaaaaggaaaat 549
>emb|AL162735.41| Human DNA sequence from clone RP11-255E17 on chromosome 1 Contains the gene for PTPL1-associated RhoGAP 1 (PARG1), a novel gene, a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene and the 3' end of a novel gene, complete sequence Length = 160535 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 gaaacaaaaggaaaatttatt 301 ||||||||||||||||||||| Sbjct: 32734 gaaacaaaaggaaaatttatt 32754
>gb|AF269366.1|AF269366 Staphylococcus epidermidis strain SR1 clone step.1002f10 genomic sequence Length = 3931 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 ttccaggctttgagatgatcacagg 151 ||||||| ||||||||||||||||| Sbjct: 2316 ttccaggatttgagatgatcacagg 2340
>gb|AC122472.5| Mus musculus BAC clone RP24-323G20 from chromosome 10, complete sequence Length = 180612 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 actattcagagagttttcctt 208 ||||||||||||||||||||| Sbjct: 167816 actattcagagagttttcctt 167836
>gb|AF270395.1|AF270395 Staphylococcus epidermidis strain SR1 clone step.4046a07 genomic sequence Length = 3431 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 ttccaggctttgagatgatcacagg 151 ||||||| ||||||||||||||||| Sbjct: 2681 ttccaggatttgagatgatcacagg 2657
>gb|AF270327.1|AF270327 Staphylococcus epidermidis strain SR1 clone step.4009f05 genomic sequence Length = 2987 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 ttccaggctttgagatgatcacagg 151 ||||||| ||||||||||||||||| Sbjct: 1044 ttccaggatttgagatgatcacagg 1020
>gb|AF270119.1|AF270119 Staphylococcus epidermidis strain SR1 clone step.1050e06 genomic sequence Length = 3284 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 ttccaggctttgagatgatcacagg 151 ||||||| ||||||||||||||||| Sbjct: 951 ttccaggatttgagatgatcacagg 927
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome Length = 2616530 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 ttccaggctttgagatgatcacagg 151 ||||||| ||||||||||||||||| Sbjct: 436933 ttccaggatttgagatgatcacagg 436957
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome Length = 2499279 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 ttccaggctttgagatgatcacagg 151 ||||||| ||||||||||||||||| Sbjct: 543815 ttccaggatttgagatgatcacagg 543839
>emb|AL833445.1|HSM804758 Homo sapiens mRNA; cDNA DKFZp686C21109 (from clone DKFZp686C21109) Length = 8491 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 gaaacaaaaggaaaatttatt 301 ||||||||||||||||||||| Sbjct: 2831 gaaacaaaaggaaaatttatt 2811
>gb|AC158164.3| Mus musculus BAC clone RP23-457E24 from chromosome 13, complete sequence Length = 137550 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 atcacagggaaacttctgat 163 |||||||||||||||||||| Sbjct: 69038 atcacagggaaacttctgat 69019
>gb|AC102497.7| Mus musculus chromosome 18, clone RP24-570C15, complete sequence Length = 165977 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 attgaaacaaaaggaaaatt 297 |||||||||||||||||||| Sbjct: 60269 attgaaacaaaaggaaaatt 60250
>gb|AC102228.8| Mus musculus chromosome 13, clone RP24-64M1, complete sequence Length = 201286 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 atcacagggaaacttctgat 163 |||||||||||||||||||| Sbjct: 146993 atcacagggaaacttctgat 147012
>gb|AC073873.7| Homo sapiens BAC clone RP11-575M4 from 7, complete sequence Length = 188992 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 ttgagatgatcacagggaaa 155 |||||||||||||||||||| Sbjct: 149909 ttgagatgatcacagggaaa 149928
>gb|AC113589.13| Mus musculus chromosome 9, clone RP23-257A19, complete sequence Length = 213826 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tagatgtgagatggagaatt 414 |||||||||||||||||||| Sbjct: 117264 tagatgtgagatggagaatt 117245
>gb|AC087432.3| Homo sapiens chromosome 3 clone RP11-96G4 map 3p, complete sequence Length = 152430 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 501 ttattagaaagggaagagagacca 524 |||| ||||||||||||||||||| Sbjct: 98748 ttataagaaagggaagagagacca 98771
>gb|AC087427.3| Homo sapiens chromosome 3 clone RP11-176P14 map 3p, complete sequence Length = 171965 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 501 ttattagaaagggaagagagacca 524 |||| ||||||||||||||||||| Sbjct: 39397 ttataagaaagggaagagagacca 39420
>gb|AC122914.4| Mus musculus BAC clone RP23-26F9 from 15, complete sequence Length = 207417 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 acaaaaggaaaatttatttt 303 |||||||||||||||||||| Sbjct: 8100 acaaaaggaaaatttatttt 8081
>gb|AC130275.16| Medicago truncatula clone mth1-63a17, complete sequence Length = 90599 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 ttattagaaagggaagagag 520 |||||||||||||||||||| Sbjct: 43090 ttattagaaagggaagagag 43071
>emb|AL672045.11| Human DNA sequence from clone RP11-577O19 on chromosome 1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) (RAC1) pseudogene, complete sequence Length = 180303 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 608 accttctggggaatgcatga 627 |||||||||||||||||||| Sbjct: 85075 accttctggggaatgcatga 85056
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 tgatgtcgcggaacagcatc 63 |||||||||||||||||||| Sbjct: 442304 tgatgtcgcggaacagcatc 442323
>emb|AL359703.13| Human DNA sequence from clone RP11-389N12 on chromosome X, complete sequence Length = 187779 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 atcctcaattccaggctttg 138 |||||||||||||||||||| Sbjct: 187101 atcctcaattccaggctttg 187120
>gb|AC091722.3| Sus scrofa clone RP44-304F21, complete sequence Length = 165604 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 atcaagctgttgctgcagcg 473 |||||||||||||||||||| Sbjct: 133662 atcaagctgttgctgcagcg 133643
>gb|AC106753.3| Homo sapiens chromosome 5 clone RP11-174H5, complete sequence Length = 95620 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gaagagtttgaagattggca 355 |||||||||||||||||||| Sbjct: 2143 gaagagtttgaagattggca 2162
>gb|AC116991.2| Homo sapiens chromosome 3 clone RP11-264M9, complete sequence Length = 152794 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 cattcttgttattagaaagg 512 |||||||||||||||||||| Sbjct: 70375 cattcttgttattagaaagg 70356
>gb|AC106791.4| Homo sapiens chromosome 5 clone RP11-381K20, complete sequence Length = 216877 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gaagagtttgaagattggca 355 |||||||||||||||||||| Sbjct: 1407 gaagagtttgaagattggca 1388
>ref|NM_136328.2| Drosophila melanogaster CG30440-RA (CG30440), mRNA Length = 3423 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 atcaagctgttgctgcagcg 473 |||||||||||||||||||| Sbjct: 1790 atcaagctgttgctgcagcg 1809
>gb|AC003683.2| Homo sapiens x BAC RP1-147H15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127683 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 cttagaagagtttgaagatt 351 |||||||||||||||||||| Sbjct: 46691 cttagaagagtttgaagatt 46672
>gb|AC160826.2| Xenopus tropicalis BAC clone ISB1-175O7 containing 5' end of dickkopf2 gene, complete sequence Length = 75660 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 caaaaggaaaatttattttc 304 |||||||||||||||||||| Sbjct: 61195 caaaaggaaaatttattttc 61176
>ref|XM_686542.1| PREDICTED: Danio rerio similar to striated muscle preferentially expressed protein (LOC563174), mRNA Length = 5275 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 tttttctgatgtcgcggaacagca 61 |||||| ||||||||||||||||| Sbjct: 380 tttttcagatgtcgcggaacagca 357
>gb|AC013450.5| Drosophila melanogaster, chromosome 2R, region 41E-41F, BAC clone BACR04B08, complete sequence Length = 196516 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 atcaagctgttgctgcagcg 473 |||||||||||||||||||| Sbjct: 159518 atcaagctgttgctgcagcg 159537
>ref|XM_687698.1| PREDICTED: Danio rerio similar to striated muscle preferentially expressed protein (LOC564358), mRNA Length = 5137 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 tttttctgatgtcgcggaacagca 61 |||||| ||||||||||||||||| Sbjct: 365 tttttcagatgtcgcggaacagca 342
>emb|BX511060.7| Zebrafish DNA sequence from clone CH211-210L19 in linkage group 10, complete sequence Length = 139250 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tttgaagattggcacgaata 361 |||||||||||||||||||| Sbjct: 7538 tttgaagattggcacgaata 7519
>gb|AC006084.1|AC006084 Homo sapiens chromosome 5, Pac clone 9c13 (LBNL H127), complete sequence Length = 121739 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gaagagtttgaagattggca 355 |||||||||||||||||||| Sbjct: 55597 gaagagtttgaagattggca 55616
>gb|AY051968.1| Drosophila melanogaster LD43457 full length cDNA Length = 3441 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 atcaagctgttgctgcagcg 473 |||||||||||||||||||| Sbjct: 1790 atcaagctgttgctgcagcg 1809
>emb|BX322540.5| Zebrafish DNA sequence from clone CH211-247B3 in linkage group 19, complete sequence Length = 156150 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 tttttctgatgtcgcggaacagca 61 |||||| ||||||||||||||||| Sbjct: 138158 tttttcagatgtcgcggaacagca 138181
>gb|AC154855.2| Mus musculus BAC clone RP23-18N3 from chromosome 14, complete sequence Length = 197373 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 tgataacttagaagagtttg 345 |||||||||||||||||||| Sbjct: 95389 tgataacttagaagagtttg 95408
>gb|AF300471.1|AF300471 Zymomonas mobilis ZM4 fosmid clone 43E12, complete sequence Length = 28690 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 gctttcggcagaagaaaagg 453 |||||||||||||||||||| Sbjct: 7879 gctttcggcagaagaaaagg 7898
>gb|AC004820.2|AC004820 Homo sapiens clone DJ0038I10, complete sequence Length = 139966 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gaagagtttgaagattggca 355 |||||||||||||||||||| Sbjct: 15157 gaagagtttgaagattggca 15138
>gb|AE003786.5| Drosophila melanogaster chromosome 2R, section 3 of 73 of the complete sequence Length = 280239 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 atcaagctgttgctgcagcg 473 |||||||||||||||||||| Sbjct: 121413 atcaagctgttgctgcagcg 121394
>gb|AC004070.1|AC004070 Human Chromosome X, complete sequence Length = 110192 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 tgaaacaaaaggaaaattta 299 |||||||||||||||||||| Sbjct: 43072 tgaaacaaaaggaaaattta 43091
>gb|AC124516.4| Mus musculus BAC clone RP23-387C9 from 12, complete sequence Length = 236774 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cacctgcaagcacttcagaa 82 |||||||||||||||||||| Sbjct: 137351 cacctgcaagcacttcagaa 137370
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 gctttcggcagaagaaaagg 453 |||||||||||||||||||| Sbjct: 1692856 gctttcggcagaagaaaagg 1692837
>gb|AC170913.2| Mus musculus BAC clone RP23-197F6 from chromosome 13, complete sequence Length = 199317 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 atcacagggaaacttctgat 163 |||||||||||||||||||| Sbjct: 40602 atcacagggaaacttctgat 40621 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,686,607 Number of Sequences: 3902068 Number of extensions: 6686607 Number of successful extensions: 158768 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 158434 Number of HSP's gapped (non-prelim): 333 length of query: 650 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 627 effective length of database: 17,143,297,704 effective search space: 10748847660408 effective search space used: 10748847660408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)