>RFCS_METJA (Q58817) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit) [Contains: Mja RFC-1
           intein; Mja RFC-2 intein; Mja RFC-3 intein]
          Length = 1847

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 23/90 (25%), Positives = 43/90 (47%)
 Frame = +2

Query: 218 KNHYTEDIKVTPMKLRDVKDTLIMRKFGHVEPDNYWSRVCEGETEAMIKRPWHFLWKSRR 397
           +N   + I +   K+R ++D L ++    +E DN+    C   T+ ++K  ++ L     
Sbjct: 363 ENPNLDVITIDKEKIRYIRDRLKVKLTRDIEKDNWSYNKCRKITQELLKEIYYRL---EE 419

Query: 398 LMEIVSAIASRMSWDFDSMHVVRGEKAQNT 487
           L EI  A+   +  D+D +   R E A+ T
Sbjct: 420 LKEIEKALEENILIDWDEVAERRKEIAEKT 449

>RX_DROME (Q9W2Q1) Retinal homeobox protein Rx (DRx1) (DRx)|
          Length = 873

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -1

Query: 227 SDSSVDPSCATSPSLSRTDSGRSQMQIPSGAQNQSRT*N 111
           SDS V+ SCA+S  L++T+S     +I SG+ ++ +  N
Sbjct: 484 SDSLVNGSCASSEDLNQTNSSEQGEKITSGSDDEGQDDN 522

>POLG_SBMVN (P21231) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3066

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 98   DEEKDFRFYFDFEHLKESASVIDQSQFWTDWGKWHKKDRLKNHY 229
            DE+K     FD E  KES+SV    +F   W +  +++R+  HY
Sbjct: 1173 DEDKKLTIDFDLETNKESSSVSFDVKFEAWWNRQLEQNRVIPHY 1216

>POLG_SBMVG (Q90069) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3066

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 98   DEEKDFRFYFDFEHLKESASVIDQSQFWTDWGKWHKKDRLKNHY 229
            DE+K     FD E  KES+SV    +F   W +  +++R+  HY
Sbjct: 1173 DEDKKLTIDFDLETNKESSSVSFDVKFEAWWNRQLEQNRVIPHY 1216

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -2

Query: 463  HNMHRVEIPTHSGGNGRHNLHQAARLPQEMPWPFDHG 353
            H  H V   +   G  RH+ H     P+E  WP D G
Sbjct: 3597 HGGHAVSSSSQKRGPARHSYHDYDEPPEEGLWPHDEG 3633

>POLG_KUNJM (P14335) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3433

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 15/137 (10%)
 Frame = +2

Query: 74   SRYTASGKD---EEKDFRFYFDFEHLKESASVIDQSQFW---TDWGKWHKKDRLKNHYTE 235
            SR   SG D   +  D RF      L   + V    Q W   T W  W +     NH+TE
Sbjct: 3189 SRMAVSGDDCVVKPLDDRFATSLHFLNAMSKVRKDIQEWKPSTGWYDWQQVPFCSNHFTE 3248

Query: 236  DIK------VTPMKLRDVKDTLIMRKFGHVEPDNYWS---RVCEGETEAMIKRPWHFLWK 388
             I       VTP +    +D L+ R    + P   W+     C  ++ A +    +F  +
Sbjct: 3249 LIMKDGRTLVTPCR---GQDELVGR--ARISPGAGWNVRDTACLAKSYAQMWLLLYFHRR 3303

Query: 389  SRRLMEIVSAIASRMSW 439
              RLM      A  ++W
Sbjct: 3304 DLRLMANAICSAVPVNW 3320

>ILVD1_AZOSE (Q5P8J4) Dihydroxy-acid dehydratase 1 (EC 4.2.1.9) (DAD 1)|
          Length = 567

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
 Frame = -2

Query: 451 RVEIPTHSGGNGRH---NLHQAARLPQEMPWPFD----HGLCLTLAHT*PVVIRLNMPKL 293
           RV +      +GR+   +LHQA  +PQ M    D    HG C+T+       +  N+P  
Sbjct: 307 RVPVIVDMKPSGRYLATDLHQAGGIPQVMKLLLDAGLLHGACVTITGQTIAEVLENVPAA 366

Query: 292 PH-DQ---RVLDVTKFHGGHLDV 236
           P  DQ   R L    +  GHL +
Sbjct: 367 PRADQGVIRTLSDPLYAEGHLAI 389

>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor|
          Length = 725

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 32/128 (25%), Positives = 56/128 (43%)
 Frame = -1

Query: 500 LAKAVCSGLSLLSQHASSRNPNSFGRQWQTQSPSSGATSTRNAMAV*SWPLSHPRTHVTS 321
           L+    S  +  S  ++S +P+S      + S SS +TST ++        +   +  TS
Sbjct: 173 LSSTTSSNPTTTSLSSTSTSPSSTSTSPSSTSTSSSSTSTSSSS-------TSTSSSSTS 225

Query: 320 SYPAQHAQTSS*SACP*RHEVSWGSP*CLQYSDSSVDPSCATSPSLSRTDSGRSQMQIPS 141
           + P+  + +SS ++       S  S    Q S S+   S +TSPS + T S  +     S
Sbjct: 226 TSPSSTSTSSSLTS------TSSSSTSTSQSSTSTSSSSTSTSPSSTSTSSSSTSTSPSS 279

Query: 140 GAQNQSRT 117
            + + S T
Sbjct: 280 KSTSASST 287

>ISPG_ACIAD (Q6FEM3) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 371

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = -2

Query: 451 RVEIPTHSGGNGRHNLHQAARLPQEMPWPFDHGLCLTLAHT*PVVIRLNMPKLPHDQRVL 272
           RV +P+         + Q   +P      FDH + L +A      +R+N   +  DQ+V 
Sbjct: 59  RVSVPSMEAAEAFGKIRQRVSVPLVADIHFDHRIALAVADYGADCLRINPGNIGSDQKVR 118

Query: 271 DV---TKFHG 251
           +V    + HG
Sbjct: 119 EVVAAARHHG 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,426,020
Number of Sequences: 219361
Number of extensions: 1995541
Number of successful extensions: 5911
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5910
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)