ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags21f02 |
|---|---|
| Clone Library Name | barley_pub |
>ACLY_CAEEL (P53585) Probable ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1106 Score = 132 bits (333), Expect(2) = 6e-34 Identities = 76/190 (40%), Positives = 112/190 (58%), Gaps = 17/190 (8%) Frame = +3 Query: 6 TFIVEPFVPHDQ--EYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKPMTLD 179 TFIVEPF H + E Y++I S+R I F E GG++I + +K +T+ +P + + + Sbjct: 103 TFIVEPFCAHTEKDEMYIAIYSERFRDVIMFYEQGGVDIGDVEEKARTVSVPVQ--LNEN 160 Query: 180 ACAPL---IATL--PLEVRTKIGDFIRGSFSVFQDLDFSFMEMNPFTLVNGEPYPLDMRG 344 A P + TL PL+ + F+ + ++DL F+++E+NPF L+N + + LD+ Sbjct: 161 AMTPSDEELTTLLGPLKDSDIVRRFVVELYKAYKDLHFTYLEINPFVLLNNQIHVLDLAA 220 Query: 345 ELDDTAAFKNFKKW----------GNIEFPLPFGRVLSPSESYIHELDEKTSASLKFTVL 494 LD+TA F KW ++EFP PFGR L+ E YI E+D KT ASLK T+L Sbjct: 221 RLDETANFLCADKWKSRLTPYGGPNHVEFPAPFGRDLTSEEQYISEMDAKTGASLKLTIL 280 Query: 495 NPKGRIWTMV 524 N KGR+WTMV Sbjct: 281 NRKGRVWTMV 290 Score = 31.2 bits (69), Expect(2) = 6e-34 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = +1 Query: 541 SVIYADTVGDLGYASELGNY 600 SV++ DTV DLG ASEL NY Sbjct: 296 SVVFTDTVCDLGGASELANY 315
>ACLY_MOUSE (Q91V92) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1091 Score = 138 bits (347), Expect = 2e-32 Identities = 80/210 (38%), Positives = 114/210 (54%), Gaps = 3/210 (1%) Frame = +3 Query: 9 FIVEPFVPHDQ--EYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPT-EKPMTLD 179 F++EPFVPH Q E+Y+ I + R G + F GG+++ + K + + + EK T D Sbjct: 105 FLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNTED 164 Query: 180 ACAPLIATLPLEVRTKIGDFIRGSFSVFQDLDFSFMEMNPFTLVNGEPYPLDMRGELDDT 359 L+ P + + + FI G F+ ++DL F+++E+NP + Y LD+ ++D T Sbjct: 165 IKRHLLVHAPEDKKEVLASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDAT 224 Query: 360 AAFKNFKKWGNIEFPLPFGRVLSPSESYIHELDEKTSASLKFTVLNPKGRIWTMVXXXXX 539 A + KWG+IEFP PFGR P E+YI +LD K+ ASLK T+LNPKGRIWTMV Sbjct: 225 ADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGA 284 Query: 540 XXXXXXXXWRFGICFRARKLCPRYSGAPKE 629 G YSGAP E Sbjct: 285 SVVYSDTICDLGGVNELANY-GEYSGAPSE 313
>ACLY_RAT (P16638) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1100 Score = 136 bits (343), Expect = 4e-32 Identities = 77/210 (36%), Positives = 114/210 (54%), Gaps = 3/210 (1%) Frame = +3 Query: 9 FIVEPFVPHDQ--EYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKPMTL-D 179 F++EPFVPH Q E+Y+ I + R G + F GG+++ + K + + + ++ + D Sbjct: 105 FLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDTKAQKLLVGVDEKLNAED 164 Query: 180 ACAPLIATLPLEVRTKIGDFIRGSFSVFQDLDFSFMEMNPFTLVNGEPYPLDMRGELDDT 359 L+ P + + + FI G F+ ++DL F+++E+NP + Y LD+ ++D T Sbjct: 165 IKRHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDAT 224 Query: 360 AAFKNFKKWGNIEFPLPFGRVLSPSESYIHELDEKTSASLKFTVLNPKGRIWTMVXXXXX 539 A + KWG+IEFP PFGR P E+YI +LD K+ ASLK T+LNPKGRIWTMV Sbjct: 225 ADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGA 284 Query: 540 XXXXXXXXWRFGICFRARKLCPRYSGAPKE 629 G YSGAP E Sbjct: 285 SVVYSDTICDLGGVNELANY-GEYSGAPSE 313
>ACLY_HUMAN (P53396) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1101 Score = 135 bits (340), Expect = 1e-31 Identities = 77/210 (36%), Positives = 114/210 (54%), Gaps = 3/210 (1%) Frame = +3 Query: 9 FIVEPFVPHDQ--EYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKPMTL-D 179 F++EPFVPH Q E+Y+ I + R G + F GG+++ + K + + + ++ + D Sbjct: 105 FLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPED 164 Query: 180 ACAPLIATLPLEVRTKIGDFIRGSFSVFQDLDFSFMEMNPFTLVNGEPYPLDMRGELDDT 359 L+ P + + + FI G F+ ++DL F+++E+NP + Y LD+ ++D T Sbjct: 165 IKKHLLVHAPDDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDAT 224 Query: 360 AAFKNFKKWGNIEFPLPFGRVLSPSESYIHELDEKTSASLKFTVLNPKGRIWTMVXXXXX 539 A + KWG+IEFP PFGR P E+YI +LD K+ ASLK T+LNPKGRIWTMV Sbjct: 225 ADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGA 284 Query: 540 XXXXXXXXWRFGICFRARKLCPRYSGAPKE 629 G YSGAP E Sbjct: 285 SVVYSDTICDLGGVNELANY-GEYSGAPSE 313
>SUCC_METJA (Q57663) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 364 Score = 63.2 bits (152), Expect = 6e-10 Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 13/150 (8%) Frame = +3 Query: 12 IVEPFVPHDQEYYLSIVSDRLGCT--ISFSECGGIEIEE----NWDKVKTIFLPTEKPMT 173 +VE +P ++EYY+SI+ DR I FS GG++IEE N +K+ + KP Sbjct: 87 LVEEKLPIEKEYYVSIIIDRDAKKPLIIFSTEGGVDIEEVAEKNPEKIIKYHIDVRKPFL 146 Query: 174 LDACAPLI--ATLPLEVRTKIGDFIRGSFSVFQDLDFSFMEMNPFTLV-NGEPYPLDMRG 344 ++ A LP K+ D I + +F++LD + +E+NP + +G Y D Sbjct: 147 PYIARWIVKEAKLPSNEIGKVADVIYKLYKIFKELDATMVEINPLVITKDGNVYAADAVL 206 Query: 345 ELDDTAAFKN----FKKWGNIEFPLPFGRV 422 LDD AAF++ F+++ N E LPF V Sbjct: 207 HLDDDAAFRHNYEEFEEYKNKE-KLPFAYV 235
>SUCC_STAS1 (Q49X32) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 388 Score = 50.4 bits (119), Expect = 4e-06 Identities = 44/123 (35%), Positives = 58/123 (47%), Gaps = 11/123 (8%) Frame = +3 Query: 39 QEYYLSIVSDRLG--CTISFSECGGIEIEENWDKV-KTIFLPTEKPMTLDACAPLIA--- 200 +EYY+ V DR T+ SE GG EIEE K + IF T P+ AP A Sbjct: 106 KEYYVGFVIDRATDRVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVV--GLAPYQARRI 163 Query: 201 ----TLPLEVRTKIGDFIRGSFSVFQDLDFSFMEMNPF-TLVNGEPYPLDMRGELDDTAA 365 +P E K F+ ++VF + D S +E+NP T GE LD + DD A Sbjct: 164 AFNINIPKESINKAAKFLVSLYNVFIEKDCSIVEINPLVTTGEGEVLALDAKVNFDDNAL 223 Query: 366 FKN 374 FK+ Sbjct: 224 FKH 226
>SUCC_AQUAE (O67546) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 385 Score = 48.1 bits (113), Expect = 2e-05 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 13/134 (9%) Frame = +3 Query: 12 IVEPFVPHDQEYYLSIVSDRLGC--TISFSECGGIEIEENWDKVKTIFLPTEKPMTLDAC 185 ++E D+EYYL+I DR I S GG+EIEE I + + ++ Sbjct: 96 LIEKATNIDKEYYLAITLDRSKSKPVIMASAAGGMEIEE-------IVKENPEAIIIETI 148 Query: 186 APLIATLPLEVRT----------KIGDFIRGSFSVFQDLDFSFMEMNPFTLV-NGEPYPL 332 P + +P + R + + ++ DLD S +E+NP L G L Sbjct: 149 DPELGLMPYQARELAFKLNLPVKEFASIALKLYQIYSDLDASLVEINPLVLTKEGNLIAL 208 Query: 333 DMRGELDDTAAFKN 374 D + ++DD A F++ Sbjct: 209 DAKLDIDDNALFRH 222
>SUCC_PYRAE (Q8ZVF3) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 382 Score = 47.8 bits (112), Expect = 3e-05 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 11/131 (8%) Frame = +3 Query: 15 VEPFVPHDQEYYLSIVSDRLGCTISF--SECGGIEIEE----NWDKVKTIFLPTEKPMTL 176 V FV ++E YLS++ DR F S GG++IEE + +K+K +++ + Sbjct: 90 VTKFVEVEREMYLSLIIDRASRRYLFLASPVGGMDIEEIAKTSPEKIKRVYVDPATGLRD 149 Query: 177 DACAPLIATLPLEVRT----KIGDFIRGSFSVFQDLDFSFMEMNPFTLVN-GEPYPLDMR 341 +++ L + T + ++ + + D D +E NP + GE PLD R Sbjct: 150 YHVRSIVSWLGFKQGTSQWQQAASIVQAMYRIMVDYDAELVESNPLAVTKEGEVIPLDAR 209 Query: 342 GELDDTAAFKN 374 +DD A FK+ Sbjct: 210 VIVDDNALFKH 220
>SUCC_RHIME (Q9EYG9) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 398 Score = 45.8 bits (107), Expect = 1e-04 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 9/122 (7%) Frame = +3 Query: 36 DQEYYLSIVSDRLGCTISF--SECGGIEI----EENWDKVKTIFLPTEKPMTLDACAPLI 197 D+E YLSI+ DR ++F S GG++I E +K+ T+ + EK +T + L Sbjct: 115 DRELYLSILVDRSVGQVAFVVSTEGGMDIEAVAEHTPEKIVTVAIDPEKGVTAENLKTLA 174 Query: 198 ATLPL--EVRTKIGDFIRGSFSVFQDLDFSFMEMNP-FTLVNGEPYPLDMRGELDDTAAF 368 L L E R + F + D S +E+NP + NG LD + D A F Sbjct: 175 DALKLEGEARADAEKLFPILYKAFVEKDMSLLEVNPLIVMTNGRMRVLDAKVSFDGNALF 234 Query: 369 KN 374 ++ Sbjct: 235 RH 236
>SUCC_ACIAD (Q6F8L4) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 388 Score = 45.8 bits (107), Expect = 1e-04 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 16/139 (11%) Frame = +3 Query: 3 TTFIVEPFVPHDQEYYLSIVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKPMTL 176 + + E P ++E YL V DR ++F S GG+EIE+ ++ + E Sbjct: 95 SVLVCEDVYPVERELYLGAVVDRSSRRVTFMASTEGGVEIEKVAEETPEKIIKVEVD--- 151 Query: 177 DACAPLIATLPLEVRT----------KIGDFIR---GSFSVFQDLDFSFMEMNPFTL-VN 314 PL+ P + R +IG F++ G++ F + DF+ E+NP ++ N Sbjct: 152 ----PLVGLQPFQAREVAFALGLKDKQIGQFVKLMAGAYQAFVENDFALFEINPLSVREN 207 Query: 315 GEPYPLDMRGELDDTAAFK 371 G+ +D + +D A ++ Sbjct: 208 GDILAVDAKIGIDSNALYR 226
>SUCC_CHLMU (Q9PL99) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 386 Score = 45.8 bits (107), Expect = 1e-04 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 9/130 (6%) Frame = +3 Query: 12 IVEPFVPHDQEYYLSIVSDRLG-C-TISFSECGGIEIEENWDKVKTIFLPTEKPMTLDAC 185 ++ P V EYY++IV DR C I S+ GGI+IEE +K + L P + Sbjct: 97 LISPLVEIALEYYIAIVIDRKHRCPVIMLSKSGGIDIEEIAEKQPDLLLKIALPSSGKIY 156 Query: 186 APLIATLP--LEVRTKIGD----FIRGSFSVFQDLDFSFMEMNPFTLV-NGEPYPLDMRG 344 A + + +E + D IR F D D S +E+NP L +G+ LD + Sbjct: 157 AYQLRHIAKFMEWDKLVADRGNHIIRKLLQCFYDNDASLLEINPLVLTKDGDLIILDAKI 216 Query: 345 ELDDTAAFKN 374 +DD A +++ Sbjct: 217 TIDDNALYRH 226
>SUCC_XYLFT (Q87A98) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 387 Score = 44.7 bits (104), Expect = 2e-04 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 9/121 (7%) Frame = +3 Query: 39 QEYYLSIVSDRLGCTISF--SECGGIEIE----ENWDKVKTIFLPTEKPMTLDACAPLIA 200 +E YLS++ DR +I++ S GG++IE E +K++T+ + + + + Sbjct: 106 KELYLSVLVDRGTRSITYIASSEGGVDIEHVAAETPEKIQTLNVDFVEGLQPYQGRDIGF 165 Query: 201 TLPLEVR--TKIGDFIRGSFSVFQDLDFSFMEMNPFTLV-NGEPYPLDMRGELDDTAAFK 371 L LE + ++ + + +F D D S +E+NP ++ NG+ Y LD + DD A F+ Sbjct: 166 HLGLEAKQVNQLSKIMISLYQLFNDKDLSLIELNPLAILSNGDLYALDGKINSDDNATFR 225 Query: 372 N 374 + Sbjct: 226 H 226
>SUCC_XYLFA (Q9PAH1) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 387 Score = 44.7 bits (104), Expect = 2e-04 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 9/121 (7%) Frame = +3 Query: 39 QEYYLSIVSDRLGCTISF--SECGGIEIE----ENWDKVKTIFLPTEKPMTLDACAPLIA 200 +E YLS++ DR +I++ S GG++IE E +K++T+ + + + + Sbjct: 106 KELYLSVLVDRGTRSITYIASSEGGVDIEHVAAETPEKIQTLNVDFVEGLQPYQGRDIGF 165 Query: 201 TLPLEVR--TKIGDFIRGSFSVFQDLDFSFMEMNPFTLV-NGEPYPLDMRGELDDTAAFK 371 L LE + ++ + + +F D D S +E+NP ++ NG+ Y LD + DD A F+ Sbjct: 166 HLGLEAKQVNQLSKIMISLYQLFNDKDLSLIELNPLAILSNGDLYALDGKINSDDNATFR 225 Query: 372 N 374 + Sbjct: 226 H 226
>SUCC_CHLTR (O84828) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 386 Score = 43.5 bits (101), Expect = 5e-04 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 9/130 (6%) Frame = +3 Query: 12 IVEPFVPHDQEYYLSIVSDRL-GC-TISFSECGGIEIEENWDKVKTIFLPTEKPMTLDAC 185 ++ P V EYYL+IV DR C I S+ GG++IEE +K L P + Sbjct: 97 LISPLVEIASEYYLAIVIDRKHRCPVIMLSKAGGVDIEEVAEKQPDQLLKMTLPSSGKIY 156 Query: 186 APLIATLP--LEVRTKIGD----FIRGSFSVFQDLDFSFMEMNPFTLV-NGEPYPLDMRG 344 + + +E I D IR F + D S +E+NP L +G LD + Sbjct: 157 GYQLRRIAKFMEWDQPIADQGNRIIRQLLQCFYEKDASLLEINPLVLTKDGSLVILDAKM 216 Query: 345 ELDDTAAFKN 374 +DD A +++ Sbjct: 217 TIDDNALYRH 226
>SUCC_NEIMB (Q9JZP4) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 388 Score = 42.0 bits (97), Expect = 0.001 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Frame = +3 Query: 3 TTFIVEPFVPHDQEYYLSIVSDRLGCTISF--SECGGIEIEE-NWDKVKTIFLPTEKPMT 173 + + E P E YL V DR I+F S GG+EIE+ + + IF T P+ Sbjct: 95 SVLVCEDMYPVQTELYLGAVVDRSTRRITFMASTEGGVEIEKVAAETPEKIFKVTVDPLV 154 Query: 174 -LDACAPLIATLPLEVRTK-IGDFIR---GSFSVFQDLDFSFMEMNPFTL-VNGEPYPLD 335 L C L ++ K I +F++ G++ F + DF+ E+NP + NG +D Sbjct: 155 GLQPCQAREVAFQLGLKDKQINEFVKLMTGAYKAFVENDFALFEVNPLAVRENGALACVD 214 Query: 336 MRGELDDTAAFK 371 + +D A ++ Sbjct: 215 GKIGIDSNALYR 226
>SUCC_HAEIN (P45101) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 389 Score = 42.0 bits (97), Expect = 0.001 Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 16/129 (12%) Frame = +3 Query: 36 DQEYYLSIVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKPMTLDACAPLIATLP 209 D+E+YLS V DR + F S GG+ IEE + +T+D PL LP Sbjct: 105 DKEFYLSAVVDRTSQKVVFIASSEGGMNIEEVVQNSPHLL----HKVTID---PLFGGLP 157 Query: 210 L---EVRTKIG----------DFIRGSFSVFQDLDFSFMEMNPFTLV-NGEPYPLDMRGE 347 E+ K+G D G +F + D S +E+NP L G LD + Sbjct: 158 YQGRELAFKLGLSGTQNKQFTDIFMGLSRLFLEKDLSLLEVNPLVLTPQGNLVCLDAKIS 217 Query: 348 LDDTAAFKN 374 +DD A F++ Sbjct: 218 VDDNALFRH 226
>SUCC_NEIMA (Q9JUT0) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 388 Score = 41.6 bits (96), Expect = 0.002 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Frame = +3 Query: 3 TTFIVEPFVPHDQEYYLSIVSDRLGCTISF--SECGGIEIEE-NWDKVKTIFLPTEKPMT 173 + + E P E YL V DR ++F S GG+EIE+ + + IF T P+ Sbjct: 95 SVLVCEDMYPVQTELYLGAVVDRSTRRVTFMASTEGGVEIEKVAAETPEKIFKVTVDPLV 154 Query: 174 -LDACAPLIATLPLEVRTK-IGDFIR---GSFSVFQDLDFSFMEMNPFTL-VNGEPYPLD 335 L C L ++ K I +F++ G++ F + DF+ E+NP + NG +D Sbjct: 155 GLQPCQAREVAFQLGLKDKQINEFVKLMTGAYKAFVENDFALFEVNPLAVRENGALACVD 214 Query: 336 MRGELDDTAAFK 371 + +D A ++ Sbjct: 215 GKIGIDSNALYR 226
>SUCC_RICFE (Q4ULQ7) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 386 Score = 38.9 bits (89), Expect = 0.013 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 16/128 (12%) Frame = +3 Query: 39 QEYYLSIVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKPMTLDACAPLIATLPL 212 +EYY SIV DRL I+F S GG++IEE +K T + + + P Sbjct: 106 KEYYFSIVFDRLASCITFIASTEGGVDIEEVAEK-------TPEKIVKFSVDPATGLQDF 158 Query: 213 EVR-------------TKIGDFIRGSFSVFQDLDFSFMEMNPFTL-VNGEPYPLDMRGEL 350 +R ++ + ++ ++ F + D + +E+NP + +G LD + Sbjct: 159 HMRGIAYELGFKDNQAKQMKEIVKSVYNAFVETDAAQIEINPLIVQTDGNLLALDAKITF 218 Query: 351 DDTAAFKN 374 DD FK+ Sbjct: 219 DDNGLFKH 226
>SUCC_PSEAE (P53593) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 388 Score = 38.9 bits (89), Expect = 0.013 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 16/139 (11%) Frame = +3 Query: 12 IVEPFVPHDQEYYLSIVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKPMTLDAC 185 +VE D+E YL V DR I F S GG++IE+ + T + + Sbjct: 97 LVESCTDIDKELYLGAVVDRSSRRIVFMASTEGGVDIEK-------VAHDTPEKILKATI 149 Query: 186 APLIATLPLEVRTKI------GDFIR-------GSFSVFQDLDFSFMEMNPFTL-VNGEP 323 PL+ P + R GD I+ G +FQD D + +E+NP + +G Sbjct: 150 DPLVGAQPYQGRELAFQLGLKGDQIKQFTHIFVGLAKLFQDYDLALLEVNPLVIKKDGNL 209 Query: 324 YPLDMRGELDDTAAFKNFK 380 + LD + +D A ++ K Sbjct: 210 HCLDAKINIDSNALYRQPK 228
>SUCC_METTH (O27115) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 365 Score = 37.4 bits (85), Expect = 0.037 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 15/136 (11%) Frame = +3 Query: 12 IVEPFVPHDQEYYLSIVSDRLGCT--ISFSECGGIEIEENWDKVKTIFLPTEKPMTLDAC 185 ++E +P D+E Y+S V DR I S GG++IEE + + + + Sbjct: 88 LIEEKIPIDRELYVSAVIDRTAKMPLIMASAEGGVDIEE-------LAARSPEKIVRYHI 140 Query: 186 APLIATLPLEVRT-------------KIGDFIRGSFSVFQDLDFSFMEMNPFTLVNGEPY 326 PL LP E R +G I + +F+ D E+NP + Sbjct: 141 NPLDEFLPYEAREIARKMGLESELIPSVGGVIWKLYQLFRKYDARLAEINPLVISGDSVI 200 Query: 327 PLDMRGELDDTAAFKN 374 D + E+DD + +++ Sbjct: 201 AADAKLEVDDDSIYRH 216
>SUCC_DEIRA (Q9RUY3) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 386 Score = 37.0 bits (84), Expect = 0.048 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%) Frame = +3 Query: 42 EYYLSIVSDR--LGCTISFSECGGIEIEENWDKVKTIFLPTEKPMTLDACAPLIATLPLE 215 EYY+ ++ DR T+ S GG+EIEE + + + P+ P E Sbjct: 101 EYYVGMIVDRNVQSYTLMASAEGGMEIEE-------VAATNPEKIIRHRVDPVTGLRPYE 153 Query: 216 VR------------TKIGDFIRGSFSVFQDLDFSFMEMNP-FTLVNGEPYPLDMRGELDD 356 R KI D + + D +E+NP F +G P LD + E+DD Sbjct: 154 AREVAIKAGFRGNLNKIADMMVKMSKAALERDAVLVEINPLFVDADGTPIALDTKFEIDD 213 Query: 357 TAAFKN 374 A +++ Sbjct: 214 NAMYRH 219
>SUCC_XANCP (Q8P676) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 389 Score = 37.0 bits (84), Expect = 0.048 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 13/124 (10%) Frame = +3 Query: 39 QEYYLSIVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKPMTLDACAPLIATLPL 212 +E YLSI+ DR TI++ S GG+EIE+ + + + +D + Sbjct: 106 KELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELI----HSLNVDFVEGVQGYHGR 161 Query: 213 EVRTKIG----------DFIRGSFSVFQDLDFSFMEMNPFTLVN-GEPYPLDMRGELDDT 359 + K+G + + +F D D + +E+NP +++ G Y LD + + DD Sbjct: 162 DFGFKLGLNAKQAGQFASIMVNLYRLFNDKDLALVEINPLAILDDGNLYALDGKFDSDDN 221 Query: 360 AAFK 371 AAF+ Sbjct: 222 AAFR 225
>MTKA_RHILO (Q98KT9) Probable malate--CoA ligase beta chain (EC 6.2.1.9)| (Malyl-CoA synthetase) (Malate thiokinase) (MTK-beta) Length = 394 Score = 35.8 bits (81), Expect = 0.11 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 9/128 (7%) Frame = +3 Query: 15 VEPFVPHDQEYYLSIVSDRLG--CTISFSECGGIEIEENWDKVKTIFLPTEKP----MTL 176 +E V QE Y+ V DR I S GG+EIE+ +K L T M Sbjct: 98 LEEAVDIAQELYVGFVLDRKEERVMIVASAAGGMEIEDIVEKEPNSILRTSVDPGVGMQR 157 Query: 177 DACAPLIATLPLEVRT--KIGDFIRGSFSVFQDLDFSFMEMNPFTLV-NGEPYPLDMRGE 347 + L L+ K + I + VF+D D S +E+NP + +G LD + Sbjct: 158 FQAREIAFGLGLDHNLIGKATETIFSCYQVFRDYDASMLEINPLVVTRDGNLIALDAKMS 217 Query: 348 LDDTAAFK 371 D+ A F+ Sbjct: 218 FDENALFR 225
>SUCC_XANAC (Q8PHL5) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 389 Score = 35.8 bits (81), Expect = 0.11 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 13/124 (10%) Frame = +3 Query: 39 QEYYLSIVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKPMTLDACAPLIATLPL 212 +E YLSI+ DR TI++ S GG+EIE+ + + + +D + Sbjct: 106 KELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELI----HALNVDFVEGVQGYHGR 161 Query: 213 EVRTKIG----------DFIRGSFSVFQDLDFSFMEMNPFTLVN-GEPYPLDMRGELDDT 359 + K+G + + +F + D + +E+NP +++ G Y LD + + DD Sbjct: 162 DFGFKLGLNAKQAGQFASIMVNLYKLFNEKDLALVEINPLAILDDGNLYALDGKFDSDDN 221 Query: 360 AAFK 371 AAF+ Sbjct: 222 AAFR 225
>SUCC_SHEON (Q8EFN8) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 388 Score = 34.7 bits (78), Expect = 0.24 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 12/135 (8%) Frame = +3 Query: 12 IVEPFVPHDQEYYLSIVSDRLGCTISF--SECGGIEIEENWDKV-----KTIFLPTEKPM 170 +VE E YL V DR + F S GG+EIE+ ++ K I P P Sbjct: 97 LVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHKAIIDPLTGPQ 156 Query: 171 TLDA--CAPLIATLPLEVR--TKIGDFIRGSFSVFQDLDFSFMEMNPFTL-VNGEPYPLD 335 A + P +++ TKI G ++F D DF+ +E+NP + G + LD Sbjct: 157 PFQARDLGFKLGLNPTQMKQFTKI---FMGLATMFVDHDFALLEINPLVITTEGNLHCLD 213 Query: 336 MRGELDDTAAFKNFK 380 + +D A F+ K Sbjct: 214 GKIGIDGNALFRQPK 228
>SUCB_SCHPO (O94415) Probable succinyl-CoA ligase [GDP-forming] beta-chain,| mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, beta chain) (SCS-beta) Length = 433 Score = 34.3 bits (77), Expect = 0.31 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%) Frame = +3 Query: 39 QEYYLSIVSDRLG-CT-ISFSECGGIEIE----ENWDKVKTIFLPTEKPMTLDACAPLIA 200 +EYY +I+ DR C I S+ GG++IE EN + LP + L+ Sbjct: 135 KEYYFAILMDRENQCPMIVASDQGGVDIETVAAENPSAIIKRSLPNSPNLDPHIAEELVD 194 Query: 201 TLPLEV--RTKIGDFIRGSFSVFQDLDFSFMEMNPFT-LVNGEPYPLDMRGELDDTAAFK 371 L + K D I + VF D D + +E+NP + + +D + DD A F+ Sbjct: 195 KLGFSSSSKPKAVDAIVKLYKVFNDCDATQVEINPLAETTDHKVLCMDAKLNFDDNAEFR 254 Query: 372 N 374 + Sbjct: 255 H 255
>SUCC_LEPIN (Q8F746) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 390 Score = 33.9 bits (76), Expect = 0.41 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 9/121 (7%) Frame = +3 Query: 39 QEYYLSIVSDR--LGCTISFSECGGIEIEE----NWDKVKTIFLPTEKPMTLDACAPLI- 197 +EYYLSI+ DR I S GG+EIEE + +K+ I + + ++ L Sbjct: 110 KEYYLSILLDRSIRKTIIMASTEGGMEIEEVAETHPEKILKIAIDPGIGLQVNQARQLAF 169 Query: 198 -ATLPLEVRTKIGDFIRGSFSVFQDLDFSFMEMNPFTLV-NGEPYPLDMRGELDDTAAFK 371 LP E + + + D S +E+NP L E D + +LD+ A ++ Sbjct: 170 ELGLPAESHKSFQSLLAAIYEAYIKEDASLLEINPLILTKQNEIIAGDCKIDLDENALYR 229 Query: 372 N 374 + Sbjct: 230 H 230
>SUCC_LEPIC (Q72PA2) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 390 Score = 33.9 bits (76), Expect = 0.41 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 9/121 (7%) Frame = +3 Query: 39 QEYYLSIVSDR--LGCTISFSECGGIEIEE----NWDKVKTIFLPTEKPMTLDACAPLI- 197 +EYYLSI+ DR I S GG+EIEE + +K+ I + + ++ L Sbjct: 110 KEYYLSILLDRSIRKTIIMASTEGGMEIEEVAETHPEKILKIAIDPGIGLQVNQARQLAF 169 Query: 198 -ATLPLEVRTKIGDFIRGSFSVFQDLDFSFMEMNPFTLV-NGEPYPLDMRGELDDTAAFK 371 LP E + + + D S +E+NP L E D + +LD+ A ++ Sbjct: 170 ELGLPAESHKSFQSLLAAIYEAYIKEDASLLEINPLILTKQNEIIAGDCKIDLDENALYR 229 Query: 372 N 374 + Sbjct: 230 H 230
>SUCC_RICPR (O05966) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 386 Score = 33.5 bits (75), Expect = 0.53 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%) Frame = +3 Query: 39 QEYYLSIVSDRLGCTISF--SECGGIEIEENWDKV--KTIFLPTEKPMTLDACAPLIATL 206 +EYY SIV DR I+F S GG++IE +K+ K I + L Sbjct: 106 KEYYFSIVFDRSASCITFIASTEGGVDIEAVAEKMPEKIIKFAVDPATGLQDFHMRGIAY 165 Query: 207 PLEVR----TKIGDFIRGSFSVFQDLDFSFMEMNPFTLVN-GEPYPLDMRGELDDTAAFK 371 L + ++ + ++ ++ F + D + +E+NP + + G LD + DD FK Sbjct: 166 ELGFKDNQAKQMKEIVKAVYNAFIETDATQIEINPLIINSYGNLLALDAKITFDDNGLFK 225 Query: 372 N 374 + Sbjct: 226 H 226
>MTKA_METEX (P53594) Malate--CoA ligase beta chain (EC 6.2.1.9) (Malyl-CoA| synthetase) (Malate thiokinase) (MTK-beta) Length = 390 Score = 33.5 bits (75), Expect = 0.53 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 13/132 (9%) Frame = +3 Query: 15 VEPFVPHDQEYYLSIVSDRLG--CTISFSECGGIEIEENWDKVKTIFLPTEKPMTLDACA 188 VE P ++E YL V DR + S+ GG++IEE K + + ++ Sbjct: 98 VETADPFERELYLGYVLDRKAERVRVIASQRGGMDIEEIAAKEPEALIQ----VVVEPAV 153 Query: 189 PLIATLPLEVRTKIG----------DFIRGSFSVFQDLDFSFMEMNPFTLVNGE-PYPLD 335 L E+ ++G I ++ F+D D + +E+NP + + LD Sbjct: 154 GLQQFQAREIAFQLGLNIKQVSAAVKTIMNAYRAFRDCDGTMLEINPLVVTKDDRVLALD 213 Query: 336 MRGELDDTAAFK 371 + DD A F+ Sbjct: 214 AKMSFDDNALFR 225
>SUCC2_ARCFU (O28097) Succinyl-CoA synthetase beta chain 2 (EC 6.2.1.5)| (SCS-beta 2) Length = 380 Score = 32.3 bits (72), Expect = 1.2 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 8/128 (6%) Frame = +3 Query: 15 VEPFVPHDQEYYLSIVSDRL--GCTISFSECGGIEIEE----NWDKVKTIFLPTEKPMTL 176 VE + +E Y + DR G S GG++IEE + +K+ I + + + Sbjct: 90 VEEMIEVQREMYAGLTIDRANKGIAAILSSVGGMDIEEIAVKHPEKIARIAVNPKWGLWD 149 Query: 177 DACAPLI--ATLPLEVRTKIGDFIRGSFSVFQDLDFSFMEMNPFTLVNGEPYPLDMRGEL 350 L+ + +P E ++ ++ + + + +E+NP + D R + Sbjct: 150 YQIRELLLNSQMPREYWKEVASILKTLYRIMVHYEAELVEINPLVVTPDGLVAADARLNI 209 Query: 351 DDTAAFKN 374 DD+A F++ Sbjct: 210 DDSALFRH 217
>SUCC_RICCN (Q92I21) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 386 Score = 32.3 bits (72), Expect = 1.2 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 9/121 (7%) Frame = +3 Query: 39 QEYYLSIVSDRLGCTISF--SECGGIEIEENWDKV--KTIFLPTEKPMTLDACAPLIATL 206 +EYY SIV DR I+F S GGI+IE +K K I + L Sbjct: 106 KEYYFSIVFDRSASCITFIASTEGGIDIEAVAEKTPDKIIKFSVDPATGLQDFHMRGIAY 165 Query: 207 PLEVR----TKIGDFIRGSFSVFQDLDFSFMEMNPFTL-VNGEPYPLDMRGELDDTAAFK 371 L + ++ + ++ ++ F + D + +E+NP + +G LD + DD F+ Sbjct: 166 ELGFKDNQAKQMKEIVKSVYNAFIETDATQIEINPLIVNSDGNLLALDAKITFDDNGLFR 225 Query: 372 N 374 + Sbjct: 226 H 226
>VATI_METMA (O59659) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 649 Score = 26.2 bits (56), Expect(2) = 1.3 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Frame = +3 Query: 111 EIEENWDKVKTIFLPTEKPMTLDACAPLIATLPLEVRTKIGDFIRGSFSVFQDLDFSFME 290 EIE K L +++ +++++ A LPL + T FI ++ +D D Sbjct: 234 EIESLKVKYADFILASDEVLSIESQK---AELPLRIATSANAFIIDGWTATEDFDKIVSV 290 Query: 291 MNPFTLVNGEPY--PLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVLS-PSESYIHELDE 461 +N T NG+ Y L++ E ++ A K+ N + P ++ S ELD Sbjct: 291 VNSAT--NGKAYVTSLELHHEEEEHAPV----KYNNSKVVAPMQEIMDLYSRPKYTELDP 344 Query: 462 KTSASLKFTVL 494 ++ + F ++ Sbjct: 345 SSAIFITFPLI 355 Score = 24.6 bits (52), Expect(2) = 1.3 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 544 VIYADTVGDLGYASELGNYARGTVELPK 627 +IY +GD+GYA LG+ A +L K Sbjct: 354 LIYGMILGDIGYAIILGSLALAIKKLVK 381
>NMT_MIMIV (Q5UR64) Putative glycylpeptide N-tetradecanoyltransferase (EC| 2.3.1.97) (Peptide N-myristoyltransferase) (Myristoyl-CoA:protein N-myristoyltransferase) (NMT) Length = 358 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -3 Query: 400 NSMLPHFLKFLNAAVSSSSPLMSRGYGSPFTRVNGFISINEKSKSWKTENDPL---MKSP 230 NS+ HF ++ A+ + P + + GFI +EK +WK EN+PL +K+ Sbjct: 161 NSLDKHFTSTIDFAIPINCPKL---------KSVGFIPDDEKLMNWKIENNPLSLMVKTD 211 Query: 229 IFVRTSK 209 I TSK Sbjct: 212 ILSVTSK 218
>YEF1_YEAST (P32622) Hypothetical 55.9 kDa protein in GDA1-UTR2 intergenic| region Length = 495 Score = 31.6 bits (70), Expect = 2.0 Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 4/152 (2%) Frame = +3 Query: 57 IVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKPMTLDACAPLIATLPLEVRTKIGD 236 IV+ G T GG I + V I + P TL + P+I +E++ ++ Sbjct: 314 IVATPTGSTAYSLSAGGSLISPS---VNAIAVTPICPHTL-SFRPIILPDSMELKVRVDM 369 Query: 237 FIRGSFSV-FQDLDFSFMEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKK---WGNIEFP 404 RG+ V F D ++ + ++ PY + E + F++ K W + E Sbjct: 370 NSRGTSWVNFDGKDRVELKQGDYVVITASPYSVPTI-ESSASEFFESISKNLNWNDREEQ 428 Query: 405 LPFGRVLSPSESYIHELDEKTSASLKFTVLNP 500 PF +LSP + LD +S + T+ NP Sbjct: 429 KPFAHILSPKNQEKYRLD--SSKNGNDTISNP 458
>FTSK_XANCP (Q8P993) DNA translocase ftsK| Length = 785 Score = 31.2 bits (69), Expect = 2.6 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = -3 Query: 304 VNGFISINEKSKSWKTENDPLMKSPIFVRTSKGRVAINGAHASSVIGFSVGRKIVLTLSQ 125 V G + E S E+DPL + + T R +I+G IG++ +++ + Sbjct: 704 VVGATGLPESSGGGGDESDPLYDEALRIVTETRRASISGVQRRLKIGYNRAARLIEAMEA 763 Query: 124 FSSISIPPHS-EKLIVQP 74 +S P H+ ++ ++ P Sbjct: 764 AGVVSPPEHNGDRTVLAP 781
>FTSK_XANAC (Q8PL00) DNA translocase ftsK| Length = 785 Score = 31.2 bits (69), Expect = 2.6 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = -3 Query: 304 VNGFISINEKSKSWKTENDPLMKSPIFVRTSKGRVAINGAHASSVIGFSVGRKIVLTLSQ 125 V G + E S E+DPL + + T R +I+G IG++ +++ + Sbjct: 704 VVGATGLPESSGGGGDESDPLYDEALRIVTETRRASISGVQRRLKIGYNRAARLIEAMEA 763 Query: 124 FSSISIPPHS-EKLIVQP 74 +S P H+ ++ ++ P Sbjct: 764 AGVVSPPEHNGDRTVLAP 781
>S45A1_RAT (Q8K4S3) Proton-associated sugar transporter A (PAST-A) (Solute| carrier family 45 member 1) Length = 751 Score = 31.2 bits (69), Expect = 2.6 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Frame = -3 Query: 511 MRPFG-LRTVNFSDALVFSSSSWI*LSDGLR-TLPKGRGNSMLPHFLKFLNAAVSSSSPL 338 +RP G RT S +L S + L +G TLP S+ F ++ +S SPL Sbjct: 293 LRPLGEKRTAMKSPSLPLPPSPPVLLEEGAGDTLPSTTATSLYASF----SSPISPPSPL 348 Query: 337 MSRGYGSPFTRVNGFISINEKSKSWKTEN 251 + YGS +R + INE + S+ T N Sbjct: 349 TPK-YGSFISRDSSLTGINEFASSFGTSN 376
>PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1, mitochondrial| precursor (EC 3.6.1.-) (ATP-dependent helicase pif1) Length = 805 Score = 30.8 bits (68), Expect = 3.5 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Frame = -3 Query: 355 SSSSPLMSR--GYGSPFTRVNGF-ISINEKSKSWKTENDPLMKSPIFVRTSKGRVAINGA 185 SS P +++ G+ S N S N+ +++ +++D L SPI + +GR A + Sbjct: 38 SSHQPSLNKLGGFSSASLNFNSSRSSTNDDQQTFSSQSDNLPSSPITLPAKRGRSAASLK 97 Query: 184 HASSVIGFSVGR 149 + +GF V + Sbjct: 98 QLDNTVGFDVSK 109
>SUCC1_ARCFU (O28732) Succinyl-CoA synthetase beta chain 1 (EC 6.2.1.5)| (SCS-beta 1) Length = 382 Score = 29.6 bits (65), Expect = 7.7 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 19/140 (13%) Frame = +3 Query: 12 IVEPFVPHDQEYYLSIVSDRLGC--TISFSECGGIEIEE----NWDKVKTIFLPTEKPMT 173 +VE + +EYY+ V D+ T+ FS GG+++EE + D + I+ Sbjct: 89 LVEEQLNMRKEYYVGYVVDKSSRLPTVIFSRMGGMDVEEIAAKHPDAIHRIYFD------ 142 Query: 174 LDACAPLIATLPLEVRTKI------GDFIRGSFSVFQDL-DFSF------MEMNPFTLVN 314 PL EVR + G+ + F + + L D +F E+NP + + Sbjct: 143 -----PLWGLKDYEVRKALFRAGFEGEEFKQMFDIIKKLVDIAFAYEAELTEINPLAVTD 197 Query: 315 GEPYPLDMRGELDDTAAFKN 374 D R DD A +++ Sbjct: 198 EGFLAADARLNTDDNALYRH 217 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,129,782 Number of Sequences: 219361 Number of extensions: 1890137 Number of successful extensions: 5086 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 4901 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5068 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
