ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags20p18 |
|---|---|
| Clone Library Name | barley_pub |
>YIF1A_BOVIN (Q3T196) Protein YIF1A (YIP1-interacting factor homolog A)| Length = 293 Score = 34.7 bits (78), Expect = 0.055 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Frame = +2 Query: 254 AYGEKFLGSSSEFMQSNITQYLS--DPQYYFQVNSQYVRNKLKVVLFPFFHR 403 AYG + M + +++S +Y+F V++ YV KL +++FP+ H+ Sbjct: 65 AYGSSIASHGKDMMNKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQ 116
>YIF1A_BRARE (Q6PC24) Protein YIF1A (YIP1-interacting factor homolog A)| Length = 307 Score = 34.7 bits (78), Expect = 0.055 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +2 Query: 257 YGEKFLGSSSEFMQSNITQYLS--DPQYYFQVNSQYVRNKLKVVLFPFFHR 403 YG + + I +++S +Y+F V+++YV KL +++FP+ H+ Sbjct: 76 YGSTLANQGKDIVNKEINRFMSVNKLKYFFAVDTKYVMKKLLLLMFPYTHQ 126
>YIF1_YEAST (P53845) Protein YIF1 (YIP1-interacting factor 1)| Length = 314 Score = 33.1 bits (74), Expect = 0.16 Identities = 13/22 (59%), Positives = 19/22 (86%) Frame = +2 Query: 335 YFQVNSQYVRNKLKVVLFPFFH 400 YFQV+++YV NKLK++L PF + Sbjct: 107 YFQVSTRYVINKLKLILVPFLN 128
>YIF1A_MOUSE (Q91XB7) Protein YIF1A (YIP1-interacting factor homolog A)| Length = 293 Score = 33.1 bits (74), Expect = 0.16 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Frame = +2 Query: 254 AYGEKFLGSSSEFMQSNITQYLS--DPQYYFQVNSQYVRNKLKVVLFPFFHR 403 AYG + + + +++S +Y+F V++ YV KL +++FP+ H+ Sbjct: 65 AYGTSIASQGKDIVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQ 116
>YIF1A_HUMAN (O95070) Protein YIF1A (YIP1-interacting factor homolog A) (54TMp)| Length = 293 Score = 33.1 bits (74), Expect = 0.16 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Frame = +2 Query: 254 AYGEKFLGSSSEFMQSNITQYLSDPQ--YYFQVNSQYVRNKLKVVLFPFFHR 403 AYG + + + +++S + Y+F V++ YV KL +++FP+ H+ Sbjct: 65 AYGSSIASHGKDMVHKELHRFVSVSKLKYFFAVDTAYVAKKLGLLVFPYTHQ 116
>NSD1_HUMAN (Q96L73) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) (Androgen r Length = 2696 Score = 30.4 bits (67), Expect = 1.0 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -3 Query: 297 CMNSELEPRNFSPYAPSPVRISPGPAPYMA 208 C + LEP Y P PV + PGP+ ++A Sbjct: 2208 CGPNPLEPGEIREYVPPPVPLPPGPSTHLA 2237
>YHL1_EBV (P03181) Hypothetical protein BHLF1| Length = 660 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +3 Query: 21 PPLTRVTAVAVSVPPHRPPGCPHSVRDLG--RHW 116 PP TR A A RPPGCP S R+ G R W Sbjct: 627 PPPTRSGAAAQRTH-RRPPGCPRSARNPGCPRTW 659 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +3 Query: 21 PPLTRVTAVAVSVPPHRPPGCPHSVRDLG--RHW 116 PP TR A A RPPGCP S R+ G R W Sbjct: 502 PPPTRSGAAAQRTH-RRPPGCPRSARNPGCPRTW 534 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +3 Query: 21 PPLTRVTAVAVSVPPHRPPGCPHSVRDLG--RHW 116 PP TR A A RPPGCP S R+ G R W Sbjct: 377 PPPTRSGAAAQRTH-RRPPGCPRSARNPGCPRTW 409 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +3 Query: 21 PPLTRVTAVAVSVPPHRPPGCPHSVRDLG--RHW 116 PP TR A A RPPGCP S R+ G R W Sbjct: 252 PPPTRSGAAAQRTH-RRPPGCPRSARNPGCPRTW 284
>SLT_ECOLI (P0AGC3) Soluble lytic murein transglycosylase precursor (EC| 3.2.1.-) (Slt70) (Exomuramidase) Length = 645 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +2 Query: 179 QMHHQNPFESAMYGAGPGLIRTGLG 253 Q + F SA Y AGPG +RT LG Sbjct: 567 QFGNNRIFSSAAYNAGPGRVRTWLG 591
>SLT_ECO57 (P0AGC4) Soluble lytic murein transglycosylase precursor (EC| 3.2.1.-) (Slt70) (Exomuramidase) Length = 645 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +2 Query: 179 QMHHQNPFESAMYGAGPGLIRTGLG 253 Q + F SA Y AGPG +RT LG Sbjct: 567 QFGNNRIFSSAAYNAGPGRVRTWLG 591
>NADD_SHIFL (P0A753) Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)| (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 213 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +3 Query: 27 LTRVTAVAVSVPPHRPPGCPHSVR 98 LTRVT + +VPPHRP +SV+ Sbjct: 32 LTRVTIIPNNVPPHRPQPEANSVQ 55
>NADD_ECOLI (P0A752) Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)| (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 213 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +3 Query: 27 LTRVTAVAVSVPPHRPPGCPHSVR 98 LTRVT + +VPPHRP +SV+ Sbjct: 32 LTRVTIIPNNVPPHRPQPEANSVQ 55
>NADD_ECO57 (Q8XBP0) Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)| (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 213 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +3 Query: 27 LTRVTAVAVSVPPHRPPGCPHSVR 98 LTRVT + +VPPHRP +SV+ Sbjct: 32 LTRVTIIPNNVPPHRPQPEANSVQ 55
>SLT_SALTY (P39434) Soluble lytic murein transglycosylase precursor (EC| 3.2.1.-) (Slt70) Length = 645 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +2 Query: 179 QMHHQNPFESAMYGAGPGLIRTGLG 253 Q + F SA Y AGPG +RT LG Sbjct: 567 QFGNNRIFASAAYNAGPGRVRTWLG 591
>Y639_ARATH (O80760) Probable polygalacturonase non-catalytic subunit At1g60390| precursor (Aromatic-rich glycoprotein At1g60390) Length = 624 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +2 Query: 197 PFESAMYGAGPGLIRTGLGAYGEKFLGSSSEF 292 P E + YG G ++ TG YGE G++ F Sbjct: 252 PNEFSGYGTGSNVVNTGFTKYGESANGANDSF 283
>SNPA_STRCS (P56406) Extracellular small neutral protease (EC 3.4.24.77)| (Snapalysin) (SCNP) Length = 132 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +2 Query: 167 VLGLQMHHQNPFESAMYGAGPG 232 VLGL H+Q P M G GPG Sbjct: 88 VLGLPDHYQGPCSELMSGGGPG 109
>SDK2_HUMAN (Q58EX2) Protein sidekick-2 precursor| Length = 2170 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +2 Query: 197 PFESAMYGAGPGLIRTGLGAYGEKFLGSSSEFMQSNITQYLSDPQYY 337 P ES+ P I G+ E + S+ + S + Y+SDP YY Sbjct: 2036 PAESSSLTEKPSEISDSQGSDSEYEVDSNHQKAHSFVNHYISDPTYY 2082
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 9/42 (21%) Frame = -3 Query: 294 MNSELEPRN---------FSPYAPSPVRISPGPAPYMALSKG 196 M+S+L P + PY P+ + PGPAP AL G Sbjct: 1853 MDSQLHPNSGGFRPGTPSLHPYRSQPLYLPPGPAPPSALLSG 1894
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 9/42 (21%) Frame = -3 Query: 294 MNSELEPRN---------FSPYAPSPVRISPGPAPYMALSKG 196 M+S+L P + PY P+ + PGPAP AL G Sbjct: 1856 MDSQLHPNSGGFRPGTPSLHPYRSQPLYLPPGPAPPSALLSG 1897
>NADD_ECOL6 (Q8FJZ1) Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)| (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 213 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +3 Query: 27 LTRVTAVAVSVPPHRP 74 LTRVT + +VPPHRP Sbjct: 32 LTRVTIIPNNVPPHRP 47
>IF2_PROMT (Q46J13) Translation initiation factor IF-2| Length = 1183 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +3 Query: 21 PPLTRVTAVAVSVPPHRPPGCPHSVRDLGR 110 PP+ R T A P HRP G + R GR Sbjct: 457 PPVNRPTPAAPKKPAHRPGGTAAAPRRTGR 486
>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -3 Query: 276 PRNFSPYAPSPVRISPGPAPYMALSKGFWWCICRPRT 166 P+ P P+P R PGP Y L +G W C +T Sbjct: 328 PKMPGPRQPAPKRPPPGPC-YRCLKEGHWARDCPTKT 363
>PTN21_HUMAN (Q16825) Tyrosine-protein phosphatase non-receptor type 21 (EC| 3.1.3.48) (Protein-tyrosine phosphatase D1) Length = 1174 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 18 PPPLTRVTAVAVSVPPHRPPGCPHSVRDLGRHWFLS 125 P P T V PP+ PP +S DL RH ++S Sbjct: 553 PSPNIMRTQVYRPPPPYPPPRPANSTPDLSRHLYIS 588
>SDK2_MOUSE (Q6V4S5) Protein sidekick-2 precursor| Length = 2176 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +2 Query: 197 PFESAMYGAGPGLIRTGLGAYGEKFLGSSSEFMQSNITQYLSDPQYY 337 P ES+ P I G+ E + ++++ S + Y+SDP YY Sbjct: 2042 PAESSSLTEKPSEISDSQGSDSEYEVDTNTQKAHSFVNHYISDPTYY 2088
>YMU5_STRCM (Q05071) Hypothetical 25.0 kDa protein in mutA 5'region (ORF-D)| Length = 237 Score = 27.3 bits (59), Expect = 8.8 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Frame = -3 Query: 279 EPRNFSPYAPSPVRISPGPAPYMALSKGFWWC--ICRPRT*ATQITIHCCHDNNSGTNA 109 EPR F+P AP P + P A G WW PR A H + G+ A Sbjct: 12 EPRWFAPGAPGPAAL---PEHVTATGVGSWWADRALDPRAVAVSCAGHVLLSGDPGSVA 67
>SALL1_MOUSE (Q9ER74) Sal-like protein 1 (Zinc finger protein Spalt-3) (Sal-3)| (MSal-3) Length = 1322 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -1 Query: 179 VGLGPKPPRSLFIAAMIITQEPMPSKIANGVGAPGGAMR 63 VGL P PP + I T+EP P I++ +P G+++ Sbjct: 556 VGL-PLPPTLPSLTPFIKTEEPAPIPISHSAASPQGSVK 593
>RPIA_YEAST (Q12189) Ribose-5-phosphate isomerase (EC 5.3.1.6)| (Phosphoriboisomerase) (D-ribose-5-phosphate ketol-isomerase) Length = 258 Score = 27.3 bits (59), Expect = 8.8 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Frame = +2 Query: 194 NPFESAMYGAGPGLIRTGLGAYGEKFLG----SSSEFMQSNITQYLSDPQYYFQVNSQYV 361 NP E A A + L K +G S+ ++ I QYL DP++Y +V S+++ Sbjct: 16 NPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFY-EVASKFI 74
>WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family member 4| (WASP-family protein member 4) Length = 625 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 Query: 18 PPPLTRVTAVAVSVPPHRPPGCP 86 PPPL++ T A PP PPG P Sbjct: 508 PPPLSQPTRGAPPPPPPPPPGPP 530
>HEMH_SYMTH (Q67T48) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 320 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -3 Query: 264 SPYAPSPVRISPGPAPYMALSKGFWWCICRPR 169 +P AP P + P Y+A G WW I +PR Sbjct: 13 TPSAPEPDAVRP----YLAEFLGDWWVIDKPR 40
>PCX_DROME (P18490) Protein pecanex| Length = 3433 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/50 (32%), Positives = 19/50 (38%) Frame = -1 Query: 221 HHTWHFQKDFGGAFVGLGPKPPRSLFIAAMIITQEPMPSKIANGVGAPGG 72 HH H GGA + P S A +TQ + G GA GG Sbjct: 507 HHHHHLHHHLGGAIIRKDPTSTMSALQLA-AVTQPGTGGSVTGGGGAAGG 555
>UL87_SHV21 (Q01007) Gene 24 protein| Length = 731 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +3 Query: 27 LTRVTAVAVSVPPHRPPGCPHSVRDLGRHWFLSYYHGSN 143 L ++A VP R H +R LG HW +Y H N Sbjct: 690 LAFISATGFHVPKIRAKLIKHVLRTLGLHWRRTYKHVYN 728 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,994,246 Number of Sequences: 219361 Number of extensions: 1350383 Number of successful extensions: 4439 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4432 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
