ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags21e24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476866.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2005 Score = 345 bits (174), Expect = 7e-92 Identities = 258/286 (90%) Strand = Plus / Plus Query: 104 ttgacgtggccacggaggccgagctgcgggaaaacgggtcccggagcacgcgccgcacca 163 |||||||||| ||||||||||| ||| |||| ||||||| |||||||||||| ||||||| Sbjct: 178 ttgacgtggcgacggaggccgacctgagggagaacgggttccggagcacgcggcgcacca 237 Query: 164 agctcgtctgcaccgtggggccagccacttgcggcccctcggagctggaggcgctggccg 223 |||||||||||||||||||||| ||||| |||||| || |||||||||||||| |||| Sbjct: 238 agctcgtctgcaccgtggggcccgccacctgcggcgccgacgagctggaggcgctcgccg 297 Query: 224 tgggcgggatgaacgtcgcgcgtctcaacatgtgccatggggaccgcgactggcaccaga 283 | |||||||||||||||||||| ||||||||||||| |||||||| || ||||||| | Sbjct: 298 tcggcgggatgaacgtcgcgcgcgtcaacatgtgccacggggaccgggagtggcaccggg 357 Query: 284 aggtcatcagctccgtgcggaggctcaacgaggagaaggggtatgccgtcgccgtcatga 343 |||||| || | |||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 358 gcgtcatccgcgcggtgcggaggctcaacgaggagaaggggttcgccgtcgccgtcatga 417 Query: 344 tggacaccgaggggagcgagatccacatgggggacctcggcggcgc 389 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 tggacaccgaggggagcgagatccacatgggggacctcggcggcgc 463
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 345 bits (174), Expect = 7e-92 Identities = 258/286 (90%) Strand = Plus / Plus Query: 104 ttgacgtggccacggaggccgagctgcgggaaaacgggtcccggagcacgcgccgcacca 163 |||||||||| ||||||||||| ||| |||| ||||||| |||||||||||| ||||||| Sbjct: 4299348 ttgacgtggcgacggaggccgacctgagggagaacgggttccggagcacgcggcgcacca 4299407 Query: 164 agctcgtctgcaccgtggggccagccacttgcggcccctcggagctggaggcgctggccg 223 |||||||||||||||||||||| ||||| |||||| || |||||||||||||| |||| Sbjct: 4299408 agctcgtctgcaccgtggggcccgccacctgcggcgccgacgagctggaggcgctcgccg 4299467 Query: 224 tgggcgggatgaacgtcgcgcgtctcaacatgtgccatggggaccgcgactggcaccaga 283 | |||||||||||||||||||| ||||||||||||| |||||||| || ||||||| | Sbjct: 4299468 tcggcgggatgaacgtcgcgcgcgtcaacatgtgccacggggaccgggagtggcaccggg 4299527 Query: 284 aggtcatcagctccgtgcggaggctcaacgaggagaaggggtatgccgtcgccgtcatga 343 |||||| || | |||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 4299528 gcgtcatccgcgcggtgcggaggctcaacgaggagaaggggttcgccgtcgccgtcatga 4299587 Query: 344 tggacaccgaggggagcgagatccacatgggggacctcggcggcgc 389 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4299588 tggacaccgaggggagcgagatccacatgggggacctcggcggcgc 4299633 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 cgccgccttccccaaccccaacgg 62 ||||| |||||||||||||||||| Sbjct: 4299265 cgccgacttccccaaccccaacgg 4299288
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09 Length = 184624 Score = 345 bits (174), Expect = 7e-92 Identities = 258/286 (90%) Strand = Plus / Plus Query: 104 ttgacgtggccacggaggccgagctgcgggaaaacgggtcccggagcacgcgccgcacca 163 |||||||||| ||||||||||| ||| |||| ||||||| |||||||||||| ||||||| Sbjct: 120402 ttgacgtggcgacggaggccgacctgagggagaacgggttccggagcacgcggcgcacca 120461 Query: 164 agctcgtctgcaccgtggggccagccacttgcggcccctcggagctggaggcgctggccg 223 |||||||||||||||||||||| ||||| |||||| || |||||||||||||| |||| Sbjct: 120462 agctcgtctgcaccgtggggcccgccacctgcggcgccgacgagctggaggcgctcgccg 120521 Query: 224 tgggcgggatgaacgtcgcgcgtctcaacatgtgccatggggaccgcgactggcaccaga 283 | |||||||||||||||||||| ||||||||||||| |||||||| || ||||||| | Sbjct: 120522 tcggcgggatgaacgtcgcgcgcgtcaacatgtgccacggggaccgggagtggcaccggg 120581 Query: 284 aggtcatcagctccgtgcggaggctcaacgaggagaaggggtatgccgtcgccgtcatga 343 |||||| || | |||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 120582 gcgtcatccgcgcggtgcggaggctcaacgaggagaaggggttcgccgtcgccgtcatga 120641 Query: 344 tggacaccgaggggagcgagatccacatgggggacctcggcggcgc 389 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120642 tggacaccgaggggagcgagatccacatgggggacctcggcggcgc 120687 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 cgccgccttccccaaccccaacgg 62 ||||| |||||||||||||||||| Sbjct: 120319 cgccgacttccccaaccccaacgg 120342
>dbj|AK070512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055B17, full insert sequence Length = 2023 Score = 337 bits (170), Expect = 2e-89 Identities = 257/286 (89%) Strand = Plus / Plus Query: 104 ttgacgtggccacggaggccgagctgcgggaaaacgggtcccggagcacgcgccgcacca 163 |||||||||| ||||||||||| ||| |||| ||||||| |||||||||||| ||||||| Sbjct: 196 ttgacgtggcgacggaggccgacctgagggagaacgggttccggagcacgcggcgcacca 255 Query: 164 agctcgtctgcaccgtggggccagccacttgcggcccctcggagctggaggcgctggccg 223 |||||||||||||||||||||| ||| | |||||| || |||||||||||||| |||| Sbjct: 256 agctcgtctgcaccgtggggcccgcctcctgcggcgccgacgagctggaggcgctcgccg 315 Query: 224 tgggcgggatgaacgtcgcgcgtctcaacatgtgccatggggaccgcgactggcaccaga 283 | |||||||||||||||||||| ||||||||||||| |||||||| || ||||||| | Sbjct: 316 tcggcgggatgaacgtcgcgcgcgtcaacatgtgccacggggaccgggagtggcaccggg 375 Query: 284 aggtcatcagctccgtgcggaggctcaacgaggagaaggggtatgccgtcgccgtcatga 343 |||||| || | |||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 376 gcgtcatccgcgcggtgcggaggctcaacgaggagaaggggttcgccgtcgccgtcatga 435 Query: 344 tggacaccgaggggagcgagatccacatgggggacctcggcggcgc 389 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 tggacaccgaggggagcgagatccacatgggggacctcggcggcgc 481
>ref|XM_506198.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1014_E09.29 mRNA Length = 1626 Score = 123 bits (62), Expect = 5e-25 Identities = 62/62 (100%) Strand = Plus / Plus Query: 328 gccgtcgccgtcatgatggacaccgaggggagcgagatccacatgggggacctcggcggc 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gccgtcgccgtcatgatggacaccgaggggagcgagatccacatgggggacctcggcggc 120 Query: 388 gc 389 || Sbjct: 121 gc 122
>dbj|AK066918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089N03, full insert sequence Length = 1625 Score = 123 bits (62), Expect = 5e-25 Identities = 62/62 (100%) Strand = Plus / Plus Query: 328 gccgtcgccgtcatgatggacaccgaggggagcgagatccacatgggggacctcggcggc 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 60 gccgtcgccgtcatgatggacaccgaggggagcgagatccacatgggggacctcggcggc 119 Query: 388 gc 389 || Sbjct: 120 gc 121
>gb|AY106719.1| Zea mays PCO096996 mRNA sequence Length = 1611 Score = 115 bits (58), Expect = 1e-22 Identities = 61/62 (98%) Strand = Plus / Plus Query: 328 gccgtcgccgtcatgatggacaccgaggggagcgagatccacatgggggacctcggcggc 387 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 10 gccgtcgccgtcatgatggacaccgagggcagcgagatccacatgggggacctcggcggc 69 Query: 388 gc 389 || Sbjct: 70 gc 71
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 28 caccctgacctcgccgccttcccca 52 ||||||||||||||||||||||||| Sbjct: 223590 caccctgacctcgccgccttcccca 223566
>ref|XM_521410.1| PREDICTED: Pan troglodytes similar to Calmodulin-related protein NB-1 (Calmodulin-like protein) (CLP) (LOC466008), mRNA Length = 2016 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 ccacggaggccgagctgcggga 134 |||||||||||||||||||||| Sbjct: 1697 ccacggaggccgagctgcggga 1718
>gb|BC031889.1| Homo sapiens calmodulin-like 3, mRNA (cDNA clone MGC:30093 IMAGE:4777524), complete cds Length = 1316 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 ccacggaggccgagctgcggga 134 |||||||||||||||||||||| Sbjct: 236 ccacggaggccgagctgcggga 257
>ref|NM_005185.2| Homo sapiens calmodulin-like 3 (CALML3), mRNA Length = 1302 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 ccacggaggccgagctgcggga 134 |||||||||||||||||||||| Sbjct: 256 ccacggaggccgagctgcggga 277
>ref|XM_845802.1| PREDICTED: Canis familiaris similar to Calmodulin-related protein NB-1 (Calmodulin-like protein) (CLP) (LOC608701), mRNA Length = 1230 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 ccacggaggccgagctgcggga 134 |||||||||||||||||||||| Sbjct: 911 ccacggaggccgagctgcggga 932
>emb|AL732437.12| Human DNA sequence from clone RP11-116G8 on chromosome 10 Contains the NET1 gene for neuroepithelial cell transforming gene 1, the gene for calmodulin-like skin protein (CLSP), the CALML3 gene for calmodulin-like 3 (CLP) and four CpG islands, complete sequence Length = 183441 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 113 ccacggaggccgagctgcggga 134 |||||||||||||||||||||| Sbjct: 64507 ccacggaggccgagctgcggga 64486
>gb|AY893101.1| Synthetic construct Homo sapiens clone FLH141246.01L calmodulin-like 3 (CALML3) mRNA, partial cds Length = 450 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 ccacggaggccgagctgcggga 134 |||||||||||||||||||||| Sbjct: 131 ccacggaggccgagctgcggga 152
>gb|AY890619.1| Synthetic construct Homo sapiens clone FLH141253.01X calmodulin-like 3 (CALML3) mRNA, complete cds Length = 450 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 ccacggaggccgagctgcggga 134 |||||||||||||||||||||| Sbjct: 131 ccacggaggccgagctgcggga 152
>gb|AY890618.1| Synthetic construct Homo sapiens clone FLH141252.01X calmodulin-like 3 (CALML3) mRNA, complete cds Length = 450 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 ccacggaggccgagctgcggga 134 |||||||||||||||||||||| Sbjct: 131 ccacggaggccgagctgcggga 152
>gb|AY890617.1| Synthetic construct Homo sapiens clone FLH141251.01X calmodulin-like 3 (CALML3) mRNA, complete cds Length = 450 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 ccacggaggccgagctgcggga 134 |||||||||||||||||||||| Sbjct: 131 ccacggaggccgagctgcggga 152
>emb|X13461.1|HSCAMPSG H.sapiens intronless calmodulin-like gene (CLP gene) for calmodulin-like protein Length = 2746 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 ccacggaggccgagctgcggga 134 |||||||||||||||||||||| Sbjct: 1203 ccacggaggccgagctgcggga 1224
>gb|M58026.1|HUMNB1 Human NB-1 mRNA, complete cds Length = 1306 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 ccacggaggccgagctgcggga 134 |||||||||||||||||||||| Sbjct: 256 ccacggaggccgagctgcggga 277
>gb|M36707.1|HUMCALPS Human calmodulin-like processed pseudogene, complete cds Length = 2739 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 ccacggaggccgagctgcggga 134 |||||||||||||||||||||| Sbjct: 1196 ccacggaggccgagctgcggga 1217
>ref|XM_469230.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1647 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gtgcggaggctcaacgaggag 318 ||||||||||||||||||||| Sbjct: 325 gtgcggaggctcaacgaggag 345
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 cggagctggaggcgctggccg 223 ||||||||||||||||||||| Sbjct: 249930 cggagctggaggcgctggccg 249950
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gtgcggaggctcaacgaggag 318 ||||||||||||||||||||| Sbjct: 26238973 gtgcggaggctcaacgaggag 26238953
>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13 Length = 341957 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 cggagctggaggcgctggccg 223 ||||||||||||||||||||| Sbjct: 249816 cggagctggaggcgctggccg 249836
>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14 Length = 343050 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 cggagctggaggcgctggccg 223 ||||||||||||||||||||| Sbjct: 250012 cggagctggaggcgctggccg 250032
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 gcaccaagctcgtctgcaccg 178 ||||||||||||||||||||| Sbjct: 80406 gcaccaagctcgtctgcaccg 80426
>gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence Length = 122939 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gtgcggaggctcaacgaggag 318 ||||||||||||||||||||| Sbjct: 68432 gtgcggaggctcaacgaggag 68412
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gtgcggaggctcaacgaggag 318 ||||||||||||||||||||| Sbjct: 26330282 gtgcggaggctcaacgaggag 26330262
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 cctcggagctggaggcgctgg 220 ||||||||||||||||||||| Sbjct: 7463504 cctcggagctggaggcgctgg 7463524
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 80 ccgctgcggtgacgcccaccg 100 ||||||||||||||||||||| Sbjct: 8380597 ccgctgcggtgacgcccaccg 8380577
>dbj|AK109881.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C12, full insert sequence Length = 1806 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gtgcggaggctcaacgaggag 318 ||||||||||||||||||||| Sbjct: 399 gtgcggaggctcaacgaggag 419
>dbj|AK103388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127I24, full insert sequence Length = 1883 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gtgcggaggctcaacgaggag 318 ||||||||||||||||||||| Sbjct: 400 gtgcggaggctcaacgaggag 420
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 203 cggagctggaggcgctggccgtgggcggg 231 |||| ||||||||||||||||| |||||| Sbjct: 4046575 cggaactggaggcgctggccgtcggcggg 4046603 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 gacctcggcggcgcgccagc 395 |||||||||||||||||||| Sbjct: 4019243 gacctcggcggcgcgccagc 4019262
>ref|XM_507337.1| PREDICTED Oryza sativa (japonica cultivar-group), P0562A06.31 mRNA Length = 1988 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gctggaggcgctggccgtgggcgg 230 |||||||||||||| ||||||||| Sbjct: 802 gctggaggcgctgggcgtgggcgg 825
>ref|XM_483774.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1422 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gctggaggcgctggccgtgggcgg 230 |||||||||||||| ||||||||| Sbjct: 806 gctggaggcgctgggcgtgggcgg 829
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 gctggaggcgctggccgtgg 226 |||||||||||||||||||| Sbjct: 2414752 gctggaggcgctggccgtgg 2414733
>gb|BC087631.1| Rattus norvegicus tRNA splicing endonuclease 2 homolog (S. cerevisiae), mRNA (cDNA clone MGC:105632 IMAGE:7319546), complete cds Length = 1796 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tcctgtagctcagcccaccc 32 |||||||||||||||||||| Sbjct: 1540 tcctgtagctcagcccaccc 1559
>ref|NM_001014057.1| Rattus norvegicus tRNA splicing endonuclease 2 homolog (S. cerevisiae) (Tsen2), mRNA Length = 1796 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tcctgtagctcagcccaccc 32 |||||||||||||||||||| Sbjct: 1540 tcctgtagctcagcccaccc 1559
>gb|AF471428.1| Homo sapiens clone 56-73a Ig heavy chain variable region, VH3 family mRNA, partial cds Length = 366 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 caaccccaacggactcctgg 70 |||||||||||||||||||| Sbjct: 317 caaccccaacggactcctgg 336
>ref|XM_967077.1| PREDICTED: Tribolium castaneum similar to CG10076-PB, isoform B (LOC660878), mRNA Length = 2115 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 cggagctggaggcgctggccgtgg 226 ||||||||||||||||| |||||| Sbjct: 1544 cggagctggaggcgctgcccgtgg 1567
>emb|BX248358.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 5/8 Length = 348408 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ccatggggaccgcgactggc 277 |||||||||||||||||||| Sbjct: 67162 ccatggggaccgcgactggc 67181
>gb|S67535.1| G protein-coupled receptor opsin homolog [cattle, retinal pigment epithelium, mRNA, 1420 nt] Length = 1420 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 ggagctggaggcgctggccgtggg 227 ||||||||||| |||||||||||| Sbjct: 52 ggagctggaggtgctggccgtggg 75
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 ctcggagctggaggcgctggccgt 224 ||||||||||||| |||||||||| Sbjct: 126206 ctcggagctggagccgctggccgt 126229
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gctggaggcgctggccgtgggcgg 230 |||||||||||||| ||||||||| Sbjct: 28036772 gctggaggcgctgggcgtgggcgg 28036795
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ggacctcggcggcgcgccag 394 |||||||||||||||||||| Sbjct: 16234275 ggacctcggcggcgcgccag 16234294
>ref|NM_175775.2| Bos taurus retinal G protein coupled receptor (RGR), mRNA Length = 1420 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 ggagctggaggcgctggccgtggg 227 ||||||||||| |||||||||||| Sbjct: 52 ggagctggaggtgctggccgtggg 75
>gb|AC091759.2| Sus scrofa clone RP44-484M10, complete sequence Length = 168703 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gaggctcaacgaggagaagg 322 |||||||||||||||||||| Sbjct: 147880 gaggctcaacgaggagaagg 147861
>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0562A06 Length = 154198 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gctggaggcgctggccgtgggcgg 230 |||||||||||||| ||||||||| Sbjct: 114264 gctggaggcgctgggcgtgggcgg 114287
>dbj|AP004742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0026F02 Length = 132237 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ggacctcggcggcgcgccag 394 |||||||||||||||||||| Sbjct: 59167 ggacctcggcggcgcgccag 59186
>dbj|AP004681.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0040M10 Length = 162790 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ggacctcggcggcgcgccag 394 |||||||||||||||||||| Sbjct: 139068 ggacctcggcggcgcgccag 139087
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0604E01 Length = 159049 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gctggaggcgctggccgtgggcgg 230 |||||||||||||| ||||||||| Sbjct: 34267 gctggaggcgctgggcgtgggcgg 34290
>dbj|AK107230.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E03, full insert sequence Length = 1988 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gctggaggcgctggccgtgggcgg 230 |||||||||||||| ||||||||| Sbjct: 802 gctggaggcgctgggcgtgggcgg 825
>dbj|AK107117.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-A12, full insert sequence Length = 1422 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gctggaggcgctggccgtgggcgg 230 |||||||||||||| ||||||||| Sbjct: 806 gctggaggcgctgggcgtgggcgg 829
>ref|NM_208628.1| Eremothecium gossypii ACL129Wp (ACL129W), mRNA Length = 777 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 ctcggagctggaggcgctggccgt 224 ||||||||||||| |||||||||| Sbjct: 288 ctcggagctggagccgctggccgt 311 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,350,365 Number of Sequences: 3902068 Number of extensions: 2350365 Number of successful extensions: 45445 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44809 Number of HSP's gapped (non-prelim): 636 length of query: 395 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 373 effective length of database: 17,147,199,772 effective search space: 6395905514956 effective search space used: 6395905514956 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
