ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags21e22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CJ003_HUMAN (Q53EZ4) Protein C10orf3 30 2.0
2RNC_BLOFL (Q7VRR0) Ribonuclease III (EC 3.1.26.3) (RNase III) 29 4.5
3BNR1_YEAST (P40450) BNI1-related protein 1 29 4.5
4COL7_ARATH (Q9C9A9) Putative zinc finger protein CONSTANS-LIKE 7 29 5.9
5LEGJ_PEA (P05692) Legumin J precursor [Contains: Legumin J alpha... 29 5.9
6PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (A... 29 5.9
7MUTA_PORGI (Q59676) Methylmalonyl-CoA mutase small subunit (EC 5... 29 5.9
8EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocy... 28 7.7
9DMDB_DROME (Q9VDW3) Dystrophin, isoform B 28 7.7

>CJ003_HUMAN (Q53EZ4) Protein C10orf3|
          Length = 464

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 115 KRSTVNHKLKGVVNGLPLHLQQGSSGERKSSAKEKHKFFELLR 243
           K  T   KLKG +  L   + + +SG+ K + KE+H+  E +R
Sbjct: 22  KSETTLEKLKGEIAHLKTSVDEITSGKGKLTDKERHRLLEKIR 64



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>RNC_BLOFL (Q7VRR0) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 232

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 103 LKKIDLEQGSRDCWSSLWQYLQHH 32
           L KIDLE   +D  + L +YLQHH
Sbjct: 147 LNKIDLEDKQKDPKTRLQEYLQHH 170



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>BNR1_YEAST (P40450) BNI1-related protein 1|
          Length = 1375

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 365 PVSIHLIPLLNKGKSTEG-FFCSSIKLDEDSIPALEPFKDLLRSNSKNLCFSFALDFLSP 189
           P S+ ++  + + KS E   F S IK   D+  +L P KD+ R  S+ LC    L   + 
Sbjct: 382 PNSVVIMEQIKQFKSKESAIFDSMIKTTNDT-NSLHPTKDIARIESEPLCLENCLLLKAK 440

Query: 188 DEP 180
           D P
Sbjct: 441 DSP 443



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>COL7_ARATH (Q9C9A9) Putative zinc finger protein CONSTANS-LIKE 7|
          Length = 392

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = -2

Query: 401 PSQEFASSHELLPVSIH--LIPLLNKGKSTEGFFC-SSIKLDEDS----IPALEPFKDLL 243
           P  +  +  +LL +  +  L+P L  G   +GFF  SS++  E+S    +P  +PF D+L
Sbjct: 92  PRSKSCAFEKLLQIESNDPLVPELG-GDEDDGFFSFSSVEETEESLNCCVPVFDPFSDML 150

Query: 242 RSNSKNLCFSFALDFLSPDE 183
             +    C       L PDE
Sbjct: 151 IDDINGFC-------LVPDE 163



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>LEGJ_PEA (P05692) Legumin J precursor [Contains: Legumin J alpha chain|
           (Legumin J acidic chain); Legumin J beta chain (Legumin
           J basic chain)]
          Length = 503

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 116 KGLLSTISLKAL*MASLCIYNKVHLVRENQVQKKSINSL 232
           K  LS +SL  L  AS C+       R NQ Q  SIN+L
Sbjct: 3   KPFLSLLSLSLLLFASACLATSSEFDRLNQCQLDSINAL 41



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>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))|
          Length = 255

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = -3

Query: 100 KKIDLEQGSRDCW-----SSLWQYLQHHSDHESGLESF 2
           K +DL    RD W      +L   L ++SDH  GLE F
Sbjct: 94  KSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVF 131



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>MUTA_PORGI (Q59676) Methylmalonyl-CoA mutase small subunit (EC 5.4.99.2)|
           (MCM-beta)
          Length = 618

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 347 IPLLNKGKSTEGFFCSSIKLDEDSIPALEPFKDLLRSNSK---NLCFSFALDFLS 192
           + LLNKG  + GF+   + ++ D++ AL   KD+  +  +   N C + A D LS
Sbjct: 101 LDLLNKGVDSLGFYLKKVHINVDTLAAL--LKDIELTAVELNFNCCITRAADLLS 153



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>EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocyst complex|
           component Sec8)
          Length = 1053

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 22  RDQNGAANTAKDCSSNPVSPVLGQSSSVEPLKRSTVNHKLKGVVNGLPLHLQQGSSGERK 201
           + QNG +N+    + +PVSP++      +   +  ++  L  +V     H+  G   E K
Sbjct: 415 KPQNGISNSGTHLAVSPVSPLMAPGGKAQAAAKELLDSILDTIVKIFENHVVIGELLEMK 474

Query: 202 SS 207
           +S
Sbjct: 475 AS 476



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>DMDB_DROME (Q9VDW3) Dystrophin, isoform B|
          Length = 1669

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 28  QNGAANTAKDCSSNPVSPVLGQSSSVEPLKRSTVNHKLKGVVNGLPLHLQ 177
           Q    N +   SSN         S VE   RST+ H ++ +   LPL LQ
Sbjct: 332 QQSLLNNSSSSSSN---------SQVEQSMRSTIEHHMRSLDRNLPLELQ 372


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.307    0.126    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,009,996
Number of Sequences: 219361
Number of extensions: 1122006
Number of successful extensions: 2443
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2443
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
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