| Clone Name | bags21e22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_462657.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1884 Score = 153 bits (77), Expect = 6e-34 Identities = 217/263 (82%), Gaps = 3/263 (1%) Strand = Plus / Plus Query: 1 ggaagctttcaagtcctgactcgtgatcagaatggtgctgcaaatactgccaaagactgc 60 ||||||||||||||||| | ||||| ||||||||| ||| ||||||||||||||| | Sbjct: 1045 ggaagctttcaagtccttagccgtgagcagaatggtactgtaaatactgccaaagaaagt 1104 Query: 61 tccagcaatcccgtgagccctgttctaggtcaatcttcttcagtggaaccactgaaaagg 120 | |||||||| | ||||||||||||||| | ||| | |||||| |||||||||| || | Sbjct: 1105 actagcaatcctgcgagccctgttctaggccgatcatattcagtagaaccactgagaaag 1164 Query: 121 tctactgtcaaccataagcttaaaggcgttgtaaatggcctccctttgcatctacaacaa 180 ||| ||| ||||| ||||| || || |||| ||||| |||||||| || || ||| Sbjct: 1165 cctattgtaaaccaaaagctaaagggtgttgctaatggtctccctttaca---actgcaa 1221 Query: 181 ggttcatctggtgagagaaaatcaagtgcaaaagaaaagcataaattctttgagttactc 240 || |||| ||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct: 1222 ggatcatttggtgagagaaaatcaagtgcgaaagataagcataaattctttgagttgctg 1281 Query: 241 cggagcaagtctttaaatggttc 263 || ||||| || || |||||||| Sbjct: 1282 cgcagcaaatcattgaatggttc 1304 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 342 tggaatcaagtgtattgaaactggaagtagttcatgcgaggatgcaaattcttgtgatgg 401 |||| |||| ||||| ||| |||||||||||| || ||||| |||||||||||||| || Sbjct: 1377 tggagtcaaatgtatggaacatggaagtagttcttgtgaggaagcaaattcttgtgaggg 1436 Query: 402 atctcagcgacacctctctgacaatgaggaaatcaa 437 |||||||| ||||| |||||||||||||||||||| Sbjct: 1437 atctcagcagcacctttctgacaatgaggaaatcaa 1472
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 153 bits (77), Expect = 6e-34 Identities = 217/263 (82%), Gaps = 3/263 (1%) Strand = Plus / Plus Query: 1 ggaagctttcaagtcctgactcgtgatcagaatggtgctgcaaatactgccaaagactgc 60 ||||||||||||||||| | ||||| ||||||||| ||| ||||||||||||||| | Sbjct: 22319124 ggaagctttcaagtccttagccgtgagcagaatggtactgtaaatactgccaaagaaagt 22319183 Query: 61 tccagcaatcccgtgagccctgttctaggtcaatcttcttcagtggaaccactgaaaagg 120 | |||||||| | ||||||||||||||| | ||| | |||||| |||||||||| || | Sbjct: 22319184 actagcaatcctgcgagccctgttctaggccgatcatattcagtagaaccactgagaaag 22319243 Query: 121 tctactgtcaaccataagcttaaaggcgttgtaaatggcctccctttgcatctacaacaa 180 ||| ||| ||||| ||||| || || |||| ||||| |||||||| || || ||| Sbjct: 22319244 cctattgtaaaccaaaagctaaagggtgttgctaatggtctccctttaca---actgcaa 22319300 Query: 181 ggttcatctggtgagagaaaatcaagtgcaaaagaaaagcataaattctttgagttactc 240 || |||| ||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct: 22319301 ggatcatttggtgagagaaaatcaagtgcgaaagataagcataaattctttgagttgctg 22319360 Query: 241 cggagcaagtctttaaatggttc 263 || ||||| || || |||||||| Sbjct: 22319361 cgcagcaaatcattgaatggttc 22319383 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 342 tggaatcaagtgtattgaaactggaagtagttcatgcgaggatgcaaattcttgtgatgg 401 |||| |||| ||||| ||| |||||||||||| || ||||| |||||||||||||| || Sbjct: 22319456 tggagtcaaatgtatggaacatggaagtagttcttgtgaggaagcaaattcttgtgaggg 22319515 Query: 402 atctcagcgacacctctctgacaatgaggaaatcaa 437 |||||||| ||||| |||||||||||||||||||| Sbjct: 22319516 atctcagcagcacctttctgacaatgaggaaatcaa 22319551
>dbj|AK068842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162C23, full insert sequence Length = 3754 Score = 153 bits (77), Expect = 6e-34 Identities = 217/263 (82%), Gaps = 3/263 (1%) Strand = Plus / Plus Query: 1 ggaagctttcaagtcctgactcgtgatcagaatggtgctgcaaatactgccaaagactgc 60 ||||||||||||||||| | ||||| ||||||||| ||| ||||||||||||||| | Sbjct: 1772 ggaagctttcaagtccttagccgtgagcagaatggtactgtaaatactgccaaagaaagt 1831 Query: 61 tccagcaatcccgtgagccctgttctaggtcaatcttcttcagtggaaccactgaaaagg 120 | |||||||| | ||||||||||||||| | ||| | |||||| |||||||||| || | Sbjct: 1832 actagcaatcctgcgagccctgttctaggccgatcatattcagtagaaccactgagaaag 1891 Query: 121 tctactgtcaaccataagcttaaaggcgttgtaaatggcctccctttgcatctacaacaa 180 ||| ||| ||||| ||||| || || |||| ||||| |||||||| || || ||| Sbjct: 1892 cctattgtaaaccaaaagctaaagggtgttgctaatggtctccctttaca---actgcaa 1948 Query: 181 ggttcatctggtgagagaaaatcaagtgcaaaagaaaagcataaattctttgagttactc 240 || |||| ||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct: 1949 ggatcatttggtgagagaaaatcaagtgcgaaagataagcataaattctttgagttgctg 2008 Query: 241 cggagcaagtctttaaatggttc 263 || ||||| || || |||||||| Sbjct: 2009 cgcagcaaatcattgaatggttc 2031 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 342 tggaatcaagtgtattgaaactggaagtagttcatgcgaggatgcaaattcttgtgatgg 401 |||| |||| ||||| ||| |||||||||||| || ||||| |||||||||||||| || Sbjct: 2104 tggagtcaaatgtatggaacatggaagtagttcttgtgaggaagcaaattcttgtgaggg 2163 Query: 402 atctcagcgacacctctctgacaatgaggaaatcaa 437 |||||||| ||||| |||||||||||||||||||| Sbjct: 2164 atctcagcagcacctttctgacaatgaggaaatcaa 2199
>dbj|AK060713.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C12, full insert sequence Length = 1344 Score = 153 bits (77), Expect = 6e-34 Identities = 217/263 (82%), Gaps = 3/263 (1%) Strand = Plus / Plus Query: 1 ggaagctttcaagtcctgactcgtgatcagaatggtgctgcaaatactgccaaagactgc 60 ||||||||||||||||| | ||||| ||||||||| ||| ||||||||||||||| | Sbjct: 121 ggaagctttcaagtccttagccgtgagcagaatggtactgtaaatactgccaaagaaagt 180 Query: 61 tccagcaatcccgtgagccctgttctaggtcaatcttcttcagtggaaccactgaaaagg 120 | |||||||| | ||||||||||||||| | ||| | |||||| |||||||||| || | Sbjct: 181 actagcaatcctgcgagccctgttctaggccgatcatattcagtagaaccactgagaaag 240 Query: 121 tctactgtcaaccataagcttaaaggcgttgtaaatggcctccctttgcatctacaacaa 180 ||| ||| ||||| ||||| || || |||| ||||| |||||||| || || ||| Sbjct: 241 cctattgtaaaccaaaagctaaagggtgttgctaatggtctccctttaca---actgcaa 297 Query: 181 ggttcatctggtgagagaaaatcaagtgcaaaagaaaagcataaattctttgagttactc 240 || |||| ||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct: 298 ggatcatttggtgagagaaaatcaagtgcgaaagataagcataaattctttgagttgctg 357 Query: 241 cggagcaagtctttaaatggttc 263 || ||||| || || |||||||| Sbjct: 358 cgcagcaaatcattgaatggttc 380 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 342 tggaatcaagtgtattgaaactggaagtagttcatgcgaggatgcaaattcttgtgatgg 401 |||| |||| ||||| ||| |||||||||||| || ||||| |||||||||||||| || Sbjct: 453 tggagtcaaatgtatggaacatggaagtagttcttgtgaggaagcaaattcttgtgaggg 512 Query: 402 atctcagcgacacctctctgacaatgaggaaatcaa 437 |||||||| ||||| |||||||||||||||||||| Sbjct: 513 atctcagcagcacctttctgacaatgaggaaatcaa 548
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 153 bits (77), Expect = 6e-34 Identities = 217/263 (82%), Gaps = 3/263 (1%) Strand = Plus / Plus Query: 1 ggaagctttcaagtcctgactcgtgatcagaatggtgctgcaaatactgccaaagactgc 60 ||||||||||||||||| | ||||| ||||||||| ||| ||||||||||||||| | Sbjct: 70028 ggaagctttcaagtccttagccgtgagcagaatggtactgtaaatactgccaaagaaagt 70087 Query: 61 tccagcaatcccgtgagccctgttctaggtcaatcttcttcagtggaaccactgaaaagg 120 | |||||||| | ||||||||||||||| | ||| | |||||| |||||||||| || | Sbjct: 70088 actagcaatcctgcgagccctgttctaggccgatcatattcagtagaaccactgagaaag 70147 Query: 121 tctactgtcaaccataagcttaaaggcgttgtaaatggcctccctttgcatctacaacaa 180 ||| ||| ||||| ||||| || || |||| ||||| |||||||| || || ||| Sbjct: 70148 cctattgtaaaccaaaagctaaagggtgttgctaatggtctccctttaca---actgcaa 70204 Query: 181 ggttcatctggtgagagaaaatcaagtgcaaaagaaaagcataaattctttgagttactc 240 || |||| ||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct: 70205 ggatcatttggtgagagaaaatcaagtgcgaaagataagcataaattctttgagttgctg 70264 Query: 241 cggagcaagtctttaaatggttc 263 || ||||| || || |||||||| Sbjct: 70265 cgcagcaaatcattgaatggttc 70287 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 342 tggaatcaagtgtattgaaactggaagtagttcatgcgaggatgcaaattcttgtgatgg 401 |||| |||| ||||| ||| |||||||||||| || ||||| |||||||||||||| || Sbjct: 70360 tggagtcaaatgtatggaacatggaagtagttcttgtgaggaagcaaattcttgtgaggg 70419 Query: 402 atctcagcgacacctctctgacaatgaggaaatcaa 437 |||||||| ||||| |||||||||||||||||||| Sbjct: 70420 atctcagcagcacctttctgacaatgaggaaatcaa 70455
>ref|XM_466299.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3008 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 385 gcaaattcttgtgatggatctcagcgacacctctctgacaatgag 429 |||||||||| ||||||||||||| | || || ||||| |||||| Sbjct: 2015 gcaaattcttctgatggatctcagaggcatctgtctgataatgag 2059 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Plus Query: 198 aaaatcaagtgcaaaagaaaagcataaattctttgagttactccggagcaagtctttaaa 257 ||||| || ||||| ||| ||||||| ||||||||||| | ||| |||||||| ||| Sbjct: 1777 aaaattaaatgcaagagataagcatagattctttgagtcgttgaggatcaagtcttcaaa 1836 Query: 258 tggttcaag 266 ||||||||| Sbjct: 1837 tggttcaag 1845 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 cttcagtggaaccactgaaaa 118 ||||||||||||||||||||| Sbjct: 1677 cttcagtggaaccactgaaaa 1697
>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold Length = 1623484 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cagtggaaccactgaaaaggt 121 ||||||||||||||||||||| Sbjct: 644341 cagtggaaccactgaaaaggt 644321
>gb|AC087264.3| Pan troglodytes clone RP43-150N19, complete sequence Length = 116671 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cagtggaaccactgaaaaggt 121 ||||||||||||||||||||| Sbjct: 64034 cagtggaaccactgaaaaggt 64014
>gb|AC145494.3| Gorilla gorilla gorilla clone CH255-100P16, complete sequence Length = 187132 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cagtggaaccactgaaaaggt 121 ||||||||||||||||||||| Sbjct: 74440 cagtggaaccactgaaaaggt 74420
>gb|AC004416.1| Homo sapiens BAC clone CTB-13N12 from 7, complete sequence Length = 32173 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cagtggaaccactgaaaaggt 121 ||||||||||||||||||||| Sbjct: 18661 cagtggaaccactgaaaaggt 18641
>gb|AC124195.4| Mus musculus BAC clone RP23-285G17 from 16, complete sequence Length = 196102 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 tcagtggaaccactgaaaagg 120 ||||||||||||||||||||| Sbjct: 122586 tcagtggaaccactgaaaagg 122606
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 385 gcaaattcttgtgatggatctcagcgacacctctctgacaatgag 429 |||||||||| ||||||||||||| | || || ||||| |||||| Sbjct: 21567063 gcaaattcttctgatggatctcagaggcatctgtctgataatgag 21567107 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Plus Query: 198 aaaatcaagtgcaaaagaaaagcataaattctttgagttactccggagcaagtctttaaa 257 ||||| || ||||| ||| ||||||| ||||||||||| | ||| |||||||| ||| Sbjct: 21566825 aaaattaaatgcaagagataagcatagattctttgagtcgttgaggatcaagtcttcaaa 21566884 Query: 258 tggttcaag 266 ||||||||| Sbjct: 21566885 tggttcaag 21566893 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 cttcagtggaaccactgaaaa 118 ||||||||||||||||||||| Sbjct: 21566725 cttcagtggaaccactgaaaa 21566745
>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold Length = 1787293 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cagtggaaccactgaaaaggt 121 ||||||||||||||||||||| Sbjct: 558877 cagtggaaccactgaaaaggt 558857
>gb|AC129915.6| Homo sapiens chromosome 8, clone CTD-3212A4, complete sequence Length = 162359 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 194 agagaaaatcaagtgcaaaagaaaa 218 |||||| |||||||||||||||||| Sbjct: 21231 agagaacatcaagtgcaaaagaaaa 21207 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 194 agagaaaatcaagtgcaaaagaaaa 218 |||||||||| |||||||||||||| Sbjct: 21179 agagaaaatccagtgcaaaagaaaa 21155 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 194 agagaaaatcaagtgcaaaagaaaa 218 |||||||||| |||||||||||||| Sbjct: 21127 agagaaaatccagtgcaaaagaaaa 21103 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 194 agagaaaatcaagtgcaaaagaaaa 218 |||||||||| |||||||||||||| Sbjct: 21075 agagaaaatccagtgcaaaagaaaa 21051 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 194 agagaaaatcaagtgcaaaagaaaa 218 |||||||||| |||||||||||||| Sbjct: 21023 agagaaaatccagtgcaaaagaaaa 20999 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 194 agagaaaatcaagtgcaaaagaaaa 218 |||||||||| |||||||||||||| Sbjct: 20971 agagaaaatccagtgcaaaagaaaa 20947 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 194 agagaaaatcaagtgcaaaagaaaa 218 |||||||||| |||||||||||||| Sbjct: 20919 agagaaaatccagtgcaaaagaaaa 20895 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 194 agagaaaatcaagtgcaaaagaaaa 218 |||||||||| |||||||||||||| Sbjct: 20867 agagaaaatccagtgcaaaagaaaa 20843
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020D05 Length = 158760 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 385 gcaaattcttgtgatggatctcagcgacacctctctgacaatgag 429 |||||||||| ||||||||||||| | || || ||||| |||||| Sbjct: 56013 gcaaattcttctgatggatctcagaggcatctgtctgataatgag 56057 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Plus Query: 198 aaaatcaagtgcaaaagaaaagcataaattctttgagttactccggagcaagtctttaaa 257 ||||| || ||||| ||| ||||||| ||||||||||| | ||| |||||||| ||| Sbjct: 55775 aaaattaaatgcaagagataagcatagattctttgagtcgttgaggatcaagtcttcaaa 55834 Query: 258 tggttcaag 266 ||||||||| Sbjct: 55835 tggttcaag 55843 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 cttcagtggaaccactgaaaa 118 ||||||||||||||||||||| Sbjct: 55675 cttcagtggaaccactgaaaa 55695
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020C11 Length = 163328 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 385 gcaaattcttgtgatggatctcagcgacacctctctgacaatgag 429 |||||||||| ||||||||||||| | || || ||||| |||||| Sbjct: 161990 gcaaattcttctgatggatctcagaggcatctgtctgataatgag 162034 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Plus Query: 198 aaaatcaagtgcaaaagaaaagcataaattctttgagttactccggagcaagtctttaaa 257 ||||| || ||||| ||| ||||||| ||||||||||| | ||| |||||||| ||| Sbjct: 161752 aaaattaaatgcaagagataagcatagattctttgagtcgttgaggatcaagtcttcaaa 161811 Query: 258 tggttcaag 266 ||||||||| Sbjct: 161812 tggttcaag 161820 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 cttcagtggaaccactgaaaa 118 ||||||||||||||||||||| Sbjct: 161652 cttcagtggaaccactgaaaa 161672
>dbj|AK102754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106P12, full insert sequence Length = 3009 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 385 gcaaattcttgtgatggatctcagcgacacctctctgacaatgag 429 |||||||||| ||||||||||||| | || || ||||| |||||| Sbjct: 2015 gcaaattcttctgatggatctcagaggcatctgtctgataatgag 2059 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Plus Query: 198 aaaatcaagtgcaaaagaaaagcataaattctttgagttactccggagcaagtctttaaa 257 ||||| || ||||| ||| ||||||| ||||||||||| | ||| |||||||| ||| Sbjct: 1777 aaaattaaatgcaagagataagcatagattctttgagtcgttgaggatcaagtcttcaaa 1836 Query: 258 tggttcaag 266 ||||||||| Sbjct: 1837 tggttcaag 1845 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 cttcagtggaaccactgaaaa 118 ||||||||||||||||||||| Sbjct: 1677 cttcagtggaaccactgaaaa 1697
>gb|U96990.1|HSMETONC22 Homo sapiens MET proto-oncogene, intron 15, 3' end Length = 539 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cagtggaaccactgaaaaggt 121 ||||||||||||||||||||| Sbjct: 246 cagtggaaccactgaaaaggt 226
>ref|NM_145660.1| Homo sapiens apolipoprotein L, 4 (APOL4), transcript variant b, mRNA Length = 3228 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaaatcaagtgcaaaagaaa 217 |||||||||||||||||||| Sbjct: 933 aaaatcaagtgcaaaagaaa 914
>ref|NM_030643.3| Homo sapiens apolipoprotein L, 4 (APOL4), transcript variant a, mRNA Length = 3417 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaaatcaagtgcaaaagaaa 217 |||||||||||||||||||| Sbjct: 1122 aaaatcaagtgcaaaagaaa 1103
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold Length = 1952403 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 690583 agtggaaccactgaaaaggt 690564
>gb|AC165380.3| Colobus guereza clone CH272-85C5, complete sequence Length = 199248 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 88134 agtggaaccactgaaaaggt 88115
>ref|XM_418534.1| PREDICTED: Gallus gallus voltage-gated sodium channel SNS (LOC395944), mRNA Length = 5190 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 acaatgaggaaatcaagcca 441 |||||||||||||||||||| Sbjct: 3290 acaatgaggaaatcaagcca 3271
>gb|AC087214.4| Papio anubis clone RP41-150K7, complete sequence Length = 141415 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 15425 agtggaaccactgaaaaggt 15406
>gb|AC084729.2| Papio anubis clone RP41-12N1, complete sequence Length = 208707 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 193518 agtggaaccactgaaaaggt 193499
>gb|AC121767.3| Mus musculus BAC clone RP23-339E1 from chromosome 1, complete sequence Length = 184736 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaaatcaagtgcaaaagaaa 217 |||||||||||||||||||| Sbjct: 110964 aaaatcaagtgcaaaagaaa 110945
>gb|AC104906.6| Mus musculus chromosome 10, clone RP24-374K6, complete sequence Length = 179312 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 tgcaaaagaaaagcataaattctt 230 ||||||||||||||| |||||||| Sbjct: 145504 tgcaaaagaaaagcagaaattctt 145481
>ref|NM_019265.2| Rattus norvegicus sodium channel, voltage-gated, type XI, alpha (Scn11a), mRNA Length = 5905 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 acaatgaggaaatcaagcca 441 |||||||||||||||||||| Sbjct: 3374 acaatgaggaaatcaagcca 3355
>gb|AC148058.4| Callicebus moloch clone LB5-358H21, complete sequence Length = 151378 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 3029 agtggaaccactgaaaaggt 3010
>gb|AC175615.3| Nomascus leucogenys leucogenys clone CH271-480C7, complete sequence Length = 165598 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 85798 agtggaaccactgaaaaggt 85779
>emb|Z95114.19|HS212A2 Human DNA sequence from clone CTA-212A2 on chromosome 22q12, complete sequence Length = 212753 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 aaaatcaagtgcaaaagaaa 217 |||||||||||||||||||| Sbjct: 175932 aaaatcaagtgcaaaagaaa 175951
>gb|AC182351.3| Ateles geoffroyi clone UC1-76C3, complete sequence Length = 212614 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 57764 agtggaaccactgaaaaggt 57745
>emb|Y13198.1|ATSNAP25L Arabidopsis thaliana gene encoding SNAP-25 like protein Length = 3718 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 tccctttgcatctacaacaaggtt 184 |||||||||||| ||||||||||| Sbjct: 747 tccctttgcatcaacaacaaggtt 724
>emb|AJ237852.1|RNO237852 Rattus norvegicus mRNA for voltage-gated sodium channel alpha subunit Length = 5849 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 acaatgaggaaatcaagcca 441 |||||||||||||||||||| Sbjct: 3323 acaatgaggaaatcaagcca 3304
>gb|AC164175.5| Mus musculus 10 BAC RP23-251I7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 180924 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 tgcaaaagaaaagcataaattctt 230 ||||||||||||||| |||||||| Sbjct: 139585 tgcaaaagaaaagcagaaattctt 139608
>emb|CR925780.8| Zebrafish DNA sequence from clone CH211-112B19 in linkage group 5, complete sequence Length = 166407 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 ttcatctggtgagagaaaat 202 |||||||||||||||||||| Sbjct: 92314 ttcatctggtgagagaaaat 92295
>gb|AC162891.6| Mus musculus chromosome 1, clone RP24-263F3, complete sequence Length = 148545 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 caaaagaaaagcataaattctttg 232 |||||||||||| ||||||||||| Sbjct: 85516 caaaagaaaagcctaaattctttg 85493
>emb|CR859913.1| Pongo pygmaeus mRNA; cDNA DKFZp469B1920 (from clone DKFZp469B1920) Length = 3149 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaaatcaagtgcaaaagaaa 217 |||||||||||||||||||| Sbjct: 844 aaaatcaagtgcaaaagaaa 825
>emb|CR607178.1| full-length cDNA clone CS0DE005YA16 of Placenta of Homo sapiens (human) Length = 2028 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaaatcaagtgcaaaagaaa 217 |||||||||||||||||||| Sbjct: 759 aaaatcaagtgcaaaagaaa 740
>gb|AF399011.1| Pseudomonas phage phiKZ, complete genome Length = 280334 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 agtcctcatctagcttgatt 297 |||||||||||||||||||| Sbjct: 75706 agtcctcatctagcttgatt 75687
>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold Length = 1678549 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 569162 agtggaaccactgaaaaggt 569143
>gb|AF059030.2|AF059030 Rattus norvegicus voltage-gated Na channel alpha subunit NaN mRNA, complete cds Length = 5905 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 acaatgaggaaatcaagcca 441 |||||||||||||||||||| Sbjct: 3374 acaatgaggaaatcaagcca 3355
>gb|AF305226.1|AF305226 Homo sapiens apolipoprotein L4 mRNA, complete cds Length = 1119 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaaatcaagtgcaaaagaaa 217 |||||||||||||||||||| Sbjct: 771 aaaatcaagtgcaaaagaaa 752
>gb|AY014915.1| Homo sapiens apolipoprotein L-IV splice variant b (APOLIV) mRNA, complete cds Length = 3227 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaaatcaagtgcaaaagaaa 217 |||||||||||||||||||| Sbjct: 933 aaaatcaagtgcaaaagaaa 914
>gb|AY014914.1| Homo sapiens apolipoprotein L-IV splice variant a (APOLIV) mRNA, complete cds Length = 3417 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaaatcaagtgcaaaagaaa 217 |||||||||||||||||||| Sbjct: 1123 aaaatcaagtgcaaaagaaa 1104
>gb|AY014913.1|AY014908S6 Homo sapiens apolipoprotein L-IV (APOLIV) gene, exon 6 and complete cds, alternatively spliced Length = 2804 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaaatcaagtgcaaaagaaa 217 |||||||||||||||||||| Sbjct: 510 aaaatcaagtgcaaaagaaa 491
>gb|AC146925.5| Callithrix jacchus clone CH259-254J2, complete sequence Length = 160998 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 70046 agtggaaccactgaaaaggt 70027
>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold Length = 1825024 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 592682 agtggaaccactgaaaaggt 592663
>gb|AC019140.5| Homo sapiens BAC clone RP11-681E16 from 2, complete sequence Length = 172868 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 cccttgtttaacagtggaat 347 |||||||||||||||||||| Sbjct: 24560 cccttgtttaacagtggaat 24541
>gb|AC124039.3| Macaca mulatta clone CH250-191K8, complete sequence Length = 174570 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 171441 agtggaaccactgaaaaggt 171422
>gb|DQ163920.1| Bacteriophage SD1-M, complete genome Length = 281083 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 agtcctcatctagcttgatt 297 |||||||||||||||||||| Sbjct: 76801 agtcctcatctagcttgatt 76782
>dbj|AB006696.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAF19 Length = 78379 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 tccctttgcatctacaacaaggtt 184 |||||||||||| ||||||||||| Sbjct: 71540 tccctttgcatcaacaacaaggtt 71517
>gb|AC153589.2| Mus musculus 6 BAC RP23-89P21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226965 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 agagaaaatcaagtgcaaaa 213 |||||||||||||||||||| Sbjct: 163760 agagaaaatcaagtgcaaaa 163741
>gb|AC154611.2| Mus musculus BAC clone RP23-335I9 from 13, complete sequence Length = 182452 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 agaaaatcaagtgcaaaaga 215 |||||||||||||||||||| Sbjct: 135556 agaaaatcaagtgcaaaaga 135575
>gb|AC151365.3| Macaca mulatta clone CH250-345I13, complete sequence Length = 40673 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 7444 agtggaaccactgaaaaggt 7425
>gb|AC154522.3| Mus musculus BAC clone RP23-480O9 from 13, complete sequence Length = 176876 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 agaaaatcaagtgcaaaaga 215 |||||||||||||||||||| Sbjct: 2983 agaaaatcaagtgcaaaaga 3002
>dbj|AP002355.3| Homo sapiens genomic DNA, chromosome 11 clone:CTD-3183N4, complete sequence Length = 56332 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 tgcatctacaacaaggttca 186 |||||||||||||||||||| Sbjct: 22896 tgcatctacaacaaggttca 22877
>gb|AC152894.3| Saimiri boliviensis boliviensis clone CH254-450C11, complete sequence Length = 167306 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 8331 agtggaaccactgaaaaggt 8312
>emb|CR847941.14| Zebrafish DNA sequence from clone CH211-275J6 in linkage group 5, complete sequence Length = 151835 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 ttcatctggtgagagaaaat 202 |||||||||||||||||||| Sbjct: 113168 ttcatctggtgagagaaaat 113149
>gb|BC017313.2| Homo sapiens cDNA clone IMAGE:3955937, containing frame-shift errors Length = 2146 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaaatcaagtgcaaaagaaa 217 |||||||||||||||||||| Sbjct: 794 aaaatcaagtgcaaaagaaa 775
>gb|BC010131.2| Homo sapiens cDNA clone IMAGE:3955938, containing frame-shift errors Length = 2146 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaaatcaagtgcaaaagaaa 217 |||||||||||||||||||| Sbjct: 794 aaaatcaagtgcaaaagaaa 775
>gb|BC004150.2| Homo sapiens apolipoprotein L, 4, mRNA (cDNA clone IMAGE:2820393), containing frame-shift errors Length = 2161 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaaatcaagtgcaaaagaaa 217 |||||||||||||||||||| Sbjct: 794 aaaatcaagtgcaaaagaaa 775
>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold Length = 2105003 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 669906 agtggaaccactgaaaaggt 669887
>gb|AC151373.4| Aotus nancymaae clone CH258-480P12, complete sequence Length = 171933 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 118752 agtggaaccactgaaaaggt 118733
>gb|DQ221252.1| Tetraodon nigroviridis voltage-gated sodium channel Nav1.4b (Nav1.4b) gene, complete cds Length = 14067 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 acaatgaggaaatcaagcca 441 |||||||||||||||||||| Sbjct: 9375 acaatgaggaaatcaagcca 9356
>gb|DQ221250.1| Takifugu rubripes voltage-gated sodium channel Nav1.4b (Nav1.4b) gene, complete cds Length = 25644 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 acaatgaggaaatcaagcca 441 |||||||||||||||||||| Sbjct: 16702 acaatgaggaaatcaagcca 16683
>gb|AC138724.3| Cercopithecus aethiops clone CH252-200P12, complete sequence Length = 173770 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agtggaaccactgaaaaggt 121 |||||||||||||||||||| Sbjct: 65549 agtggaaccactgaaaaggt 65530 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,163,536 Number of Sequences: 3902068 Number of extensions: 4163536 Number of successful extensions: 72833 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72630 Number of HSP's gapped (non-prelim): 193 length of query: 441 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 419 effective length of database: 17,147,199,772 effective search space: 7184676704468 effective search space used: 7184676704468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)