ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags21e14 |
|---|---|
| Clone Library Name | barley_pub |
>AP3B1_MOUSE (Q9Z1T1) AP-3 complex subunit beta-1 (Adapter-related protein| complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor protein complex AP-3 beta-1 subunit) (Clathrin assembly protein complex 3 beta-1 large chain) Length = 1105 Score = 34.3 bits (77), Expect = 0.32 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 13/102 (12%) Frame = +1 Query: 85 ELSNPHRQPPVPASISPQRLSLAE---PMDSSKSPQPLKKSRTMLSGTDGQ--------- 228 ELSN P P+ + + + A+ P+ +K +P+KK + + + Sbjct: 636 ELSNWPEVAPDPSVRNVEVIESAKEWTPLGKTKKEKPMKKFYSESEEEEDEDEDEDEEEE 695 Query: 229 -QFENDEFPSETASDKTPGLKSETVDKVQDEFGEDSSPLQQS 351 + + DE PS+++SD G SE+ D ++ EDSS Q S Sbjct: 696 EKEDEDENPSDSSSDSESGSGSESGDTGTEDSSEDSSSGQDS 737
>ABCCD_HUMAN (Q9NSE7) Putative ATP-binding cassette transporter C13| Length = 274 Score = 33.1 bits (74), Expect = 0.71 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Frame = +1 Query: 193 KSRTMLSGTDGQQFENDEFPSETASDKTPGLKSETVDKVQDEFGEDS---SPLQQSAASN 363 K +LS Q+F E + ++ T GL S+ + F + SPL ++ +S+ Sbjct: 198 KKALLLSNVSRQKFSTGEIINLMSA--THGLDSKPQSPLVCPFSNPNGRISPLARAGSSS 255 Query: 364 VSYRGSPCIGAFTIQCARC 420 VS GSPC+ +T +C C Sbjct: 256 VSRGGSPCV-CYTNKCFSC 273
>MMP1B_MOUSE (Q9EPL6) Interstitial collagenase B precursor (EC 3.4.24.7) (Matrix| metalloproteinase-1b) (MMP-1b) (Mcol-B) Length = 463 Score = 33.1 bits (74), Expect = 0.71 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 13/140 (9%) Frame = +1 Query: 223 GQQFENDE----FPSETASDKTPGLKSETVDKVQDEFGEDSSPLQQSAASNVSYRGSPCI 390 G NDE FPS T S+K L + ++++Q +G +P+Q + A+ PC Sbjct: 222 GLSHSNDEEALMFPSYTWSNKDFVLNQDDINRIQALYGPSPNPIQLTDATL-----DPCN 276 Query: 391 GAFTIQCARCFKWRLIPTKEKYEEIREHIIQEPFDCERAREWKPDV--TCDDQEDISQ-- 558 T ++ +I K+++ + EP W P++ D ++S Sbjct: 277 SGLTFDAIITYRGEVIFFKDRFYIRVISFLPEPLIDVIDLTW-PNLPGKFDAAYEVSGVD 335 Query: 559 -----DGSRLWAIDKPNIAQ 603 GS++WA+ + N+ + Sbjct: 336 ELRFFKGSKVWAVQEQNVLE 355
>MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc finger CW-type| coiled-coil domain protein 1) Length = 970 Score = 32.7 bits (73), Expect = 0.93 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +1 Query: 304 KVQDEFGEDSSPLQQSAASNVSYRGSPCIGA-FTIQCARCFKWRLIP 441 K DEFG S+ Q +S + Y+ + TIQC C KWR +P Sbjct: 401 KFWDEFGYLSANWNQPPSSELRYKRRRAMEIPTTIQCDLCLKWRTLP 447
>PKN1_RAT (Q63433) Serine/threonine-protein kinase N1 (EC 2.7.11.13) (Protein| kinase C-like 1) (Protein-kinase C-related kinase 1) (Protein kinase C-like PKN) (Serine-threonine protein kinase N) (Protease-activated kinase 1) (PAK-1) Length = 946 Score = 32.7 bits (73), Expect = 0.93 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = +1 Query: 127 ISPQRLSLAEPMDSS--KSPQPLKKSRTMLSGTDGQQFENDEFPSETASDKTPGLKS 291 IS ++L+L DSS KSP L + LS + + E PSET PGL S Sbjct: 551 ISMEKLNLGADSDSSSQKSPAGLPSTSCSLSSPTHESTTSPELPSETQETPGPGLCS 607
>PKN1_MOUSE (P70268) Serine/threonine-protein kinase N1 (EC 2.7.11.13) (Protein| kinase C-like 1) (Protein-kinase C-related kinase 1) (Protein kinase C-like PKN) (Serine-threonine protein kinase N) Length = 946 Score = 32.7 bits (73), Expect = 0.93 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = +1 Query: 127 ISPQRLSLAEPMDSS--KSPQPLKKSRTMLSGTDGQQFENDEFPSETASDKTPGLKS 291 IS ++L+L DSS KSP L + LS + + E PSET PGL S Sbjct: 551 ISMEKLNLGADSDSSSQKSPPGLPSTSCSLSSPTHESTTSPELPSETQETPGPGLCS 607
>HXA3_HETFR (Q9IA21) Homeobox protein Hox-A3| Length = 410 Score = 32.7 bits (73), Expect = 0.93 Identities = 24/98 (24%), Positives = 38/98 (38%) Frame = +1 Query: 97 PHRQPPVPASISPQRLSLAEPMDSSKSPQPLKKSRTMLSGTDGQQFENDEFPSETASDKT 276 P PP P S+SP + + + SS S P S+ +S FP S + Sbjct: 92 PPPPPPPPPSVSPPQNTSSNSTQSSTSKNPTLTSQATIS--------KQIFPWMKESRQN 143 Query: 277 PGLKSETVDKVQDEFGEDSSPLQQSAASNVSYRGSPCI 390 K+ + V+ GE S P S + +Y + + Sbjct: 144 AKQKTSSSSSVESSAGEKSPPGPASKRARTAYTSAQLV 181
>SMI2_DEBHA (Q6BJY4) KNR4/SMI1 homolog 2| Length = 590 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/80 (22%), Positives = 36/80 (45%) Frame = +1 Query: 130 SPQRLSLAEPMDSSKSPQPLKKSRTMLSGTDGQQFENDEFPSETASDKTPGLKSETVDKV 309 S + + AEP +K + + + + T ++ + +E E +K + E + Sbjct: 481 SVKNTAAAEPEKETKQKDEIIEEKPEVIETPAKEDDKEEEEEEQEEEKEQEKEHENEEAP 540 Query: 310 QDEFGEDSSPLQQSAASNVS 369 +DE ED+ PL ++ N S Sbjct: 541 EDEQNEDAKPLTKTQKKNQS 560
>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Neuroendocrine-specific protein) (NSP) (Neuroendocrine-specific protein C homolog) (RTN-x) (Reticulon-5) Length = 1192 Score = 31.2 bits (69), Expect = 2.7 Identities = 27/92 (29%), Positives = 39/92 (42%) Frame = +1 Query: 109 PPVPASISPQRLSLAEPMDSSKSPQPLKKSRTMLSGTDGQQFENDEFPSETASDKTPGLK 288 PP PAS+SPQ AEP+ + +P P PS A+ K G Sbjct: 145 PPPPASVSPQ----AEPVWTPPAPAPAAP------------------PSTPAAPKRRG-S 181 Query: 289 SETVDKVQDEFGEDSSPLQQSAASNVSYRGSP 384 S +VD+ S P+ +S+A N+ + P Sbjct: 182 SGSVDETLFALPAASEPVIRSSAENMDLKEQP 213
>IER2_HUMAN (Q9BTL4) Immediate early response gene 2 protein (Protein ETR101)| Length = 223 Score = 31.2 bits (69), Expect = 2.7 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%) Frame = +1 Query: 85 ELSNPHRQPPVPASISPQRLSLAEPMDSSKSPQPLKKSRTMLSGTDGQQFENDEFPSETA 264 E + P + P P + Q AE + +P+P K SR S + + PS+ A Sbjct: 82 ETATPDGEHPFPEPMDTQEAPTAEETSACCAPRPAKVSRKRRSSSLSDGGDAGLVPSKKA 141 Query: 265 ----SDKTPGLKSETVDKVQ 312 ++ G SE D++Q Sbjct: 142 RLEEKEEEEGASSEVADRLQ 161
>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)| Length = 5120 Score = 30.8 bits (68), Expect = 3.5 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 15/115 (13%) Frame = +1 Query: 85 ELSNPHRQPPVPAS-------ISPQRLSLAEPMDS------SKSPQPLKKSRTMLSGTDG 225 +L P ++ P PAS + P + A P SK P P KK +M Sbjct: 438 QLPPPKQKTPTPASTAKPSPQLQPGQKKDASPKPDPSQQADSKKPVPQKKQPSMPGSPPV 497 Query: 226 QQFENDEFPSETAS--DKTPGLKSETVDKVQDEFGEDSSPLQQSAASNVSYRGSP 384 + + PS+T D TP KS+ V Q E ++ +Q+ V +P Sbjct: 498 KSKQTHAEPSDTGQQIDSTP--KSDQVKPTQAEEKQNQPSIQKPTMDTVPTSAAP 550
>MMP1A_MOUSE (Q9EPL5) Interstitial collagenase A precursor (EC 3.4.24.7) (Matrix| metalloproteinase-1a) (MMP-1a) (Mcol-A) Length = 464 Score = 30.4 bits (67), Expect = 4.6 Identities = 19/81 (23%), Positives = 35/81 (43%) Frame = +1 Query: 247 FPSETASDKTPGLKSETVDKVQDEFGEDSSPLQQSAASNVSYRGSPCIGAFTIQCARCFK 426 FPS T + L + ++++QD +G +P+Q + A+ PC G T F+ Sbjct: 234 FPSYTWYTEDFVLNQDDINRIQDLYGPSPNPIQPTGATT----PHPCNGDLTFDAITTFR 289 Query: 427 WRLIPTKEKYEEIREHIIQEP 489 + K ++ + EP Sbjct: 290 GEVFFFKGRFYIRVNRFMPEP 310
>SEC7_YEAST (P11075) Protein transport protein SEC7| Length = 2009 Score = 30.0 bits (66), Expect = 6.0 Identities = 23/80 (28%), Positives = 32/80 (40%) Frame = +1 Query: 91 SNPHRQPPVPASISPQRLSLAEPMDSSKSPQPLKKSRTMLSGTDGQQFENDEFPSETASD 270 SN V S+ PQ E +++ Q K S + ++ ND T Sbjct: 19 SNVETASSVNPSVKPQNAIKEEAKETNGEDQKCKGPENAGSTAETKETSNDA----TNGM 74 Query: 271 KTPGLKSETVDKVQDEFGED 330 KTP +T DK D+ GED Sbjct: 75 KTPEETEDTNDKRHDDEGED 94
>SOK2_YEAST (P53438) Protein SOK2| Length = 785 Score = 30.0 bits (66), Expect = 6.0 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = +2 Query: 26 ASQPSKS--PNPSAAGGGDYHRSSPIPTASRPYRPRSL---RRGYLLQNLWTVLNLP 181 A QP S P PS +H++S IP + P PRSL +G QN NLP Sbjct: 267 AQQPPMSNYPQPSTYQYPGFHKTSSIPNSHSPIPPRSLTTPTQGPTSQNGPLSYNLP 323
>ATG11_NEUCR (Q7S055) Autophagy-related protein 11| Length = 1300 Score = 30.0 bits (66), Expect = 6.0 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Frame = +1 Query: 160 MDSSKSPQPLKKSRTMLSGTDGQQFENDEFPSETASDKTPGLKSETVDKVQDEFGEDSSP 339 +D SKS Q + T G G+ D+ ++ D + GL+ ++ V+D+ G S+P Sbjct: 1077 VDLSKSLQHDQAGETRKDGARGETESLDDDENDNPFDLSDGLRWYLIEAVEDKPGAPSTP 1136 Query: 340 -LQQS--AASNV 366 L +S AA+NV Sbjct: 1137 GLAKSTVAANNV 1148
>YVX3_CAEEL (Q22230) Hypothetical oxidoreductase T05C12.3 (EC 1.-.-.-)| Length = 309 Score = 30.0 bits (66), Expect = 6.0 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 271 KTPGLKSETVDKVQDEFGEDSSPLQQSAASN 363 K PG+ S+T DK+ +FG+ L +AA N Sbjct: 85 KDPGMVSDTFDKIDKKFGKHPDILVNNAAGN 115
>YOQ1_CAEEL (P34639) Hypothetical protein ZK512.1| Length = 332 Score = 26.9 bits (58), Expect(2) = 6.2 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = -2 Query: 182 WGDLELSIGSARDSLCGEIEAG-TGGWRW 99 W D+E+S+ + CGE ++ TG + W Sbjct: 123 WEDMEVSLEGEKKFFCGEFDSSFTGRYHW 151 Score = 21.6 bits (44), Expect(2) = 6.2 Identities = 10/40 (25%), Positives = 19/40 (47%) Frame = -3 Query: 358 KQLIAAMGNCLLQIHLALYLLFLTSNQAFYLMQFQTETRH 239 K +I+ + L+ + +Y+L TSN + +T H Sbjct: 72 KLIISGVSGTLIVAAIKIYILVHTSNNILLICCHMEDTWH 111
>ANK3_HUMAN (Q12955) Ankyrin-3 (ANK-3) (Ankyrin-G)| Length = 4377 Score = 24.3 bits (51), Expect(2) = 6.4 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +1 Query: 103 RQPPVPASISPQRLSLAEPMDSSKSPQPLKKSRTMLSGTDGQQ 231 + P +P+S P+++ L++ + SKS K S + DG Q Sbjct: 2665 KAPSLPSS--PEKMVLSQQTEDSKSTVEAKGSISQSKAPDGPQ 2705 Score = 23.9 bits (50), Expect(2) = 6.4 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +2 Query: 8 RRRTEKASQPSKSPNPSAAGGGDYHRSSPIPTASRP 115 R +TEK + +SP A SS PT+S P Sbjct: 2596 RDKTEKLNDELQSPEKKARPKNGKEYSSQSPTSSSP 2631
>WOX1_ARATH (Q6X7K0) WUSCHEL-related homeobox 1 (PFS2-like protein)| Length = 350 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = -2 Query: 386 HGDPRYDTLEAADCCNGELSSPNSSCTLSTVSDFKPGVLSDAVSDGNSSFSNCW 225 +GD D + DC NGEL + L + K G SD D N S +C+ Sbjct: 291 NGDDNKDQEQHEDCSNGELDHQEQTLELFPLR--KEGFCSDGEKDKNISGIHCF 342
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = +2 Query: 23 KASQPSKSPNPSAAGGGDYHRSSPIPTASRP-YRPRSLRR 139 K PSKSP P A G S+ +P+A+RP RP + RR Sbjct: 167 KPGAPSKSPKPGARPGPRPGGSAGLPSAARPGPRPGAGRR 206
>ZN678_HUMAN (Q5SXM1) Zinc finger protein 678| Length = 525 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +1 Query: 403 IQCARCFKWRLIPTKEKYEEIREHIIQEPFDCE 501 I+C R F WR I T+ K R H ++P+ CE Sbjct: 100 IECGRNFSWRSILTEHK----RIHTGEKPYKCE 128
>MCL1_SCHPO (Q9C107) Minichromosome loss protein 1| Length = 815 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +1 Query: 115 VPASISPQRLSLAEPMDSSKSPQPLKKSRTMLSGTDGQQFEN-DEFPSETASDKTPGLKS 291 +P SI + +P+ SSKS K L G+D +Q +N ++ +A+++ + Sbjct: 301 IPKSILKEENDPTKPLTSSKSKNRTSKELDDLFGSDDEQSQNVNDLDGNSANEENEFINH 360 Query: 292 ETVDKVQDEFGE 327 + +D D G+ Sbjct: 361 DGLDSSLDLDGD 372
>KIF14_HUMAN (Q15058) Kinesin-like protein KIF14| Length = 1648 Score = 29.6 bits (65), Expect = 7.9 Identities = 22/84 (26%), Positives = 38/84 (45%) Frame = +1 Query: 319 FGEDSSPLQQSAASNVSYRGSPCIGAFTIQCARCFKWRLIPTKEKYEEIREHIIQEPFDC 498 FG + S+ +++ R +G T F+ +L KE YE + ++ F C Sbjct: 1110 FGRHDISDKSSSDTSIRVRNLK-LGISTFWSLEKFESKLAAMKELYESNGSNRGEDAF-C 1167 Query: 499 ERAREWKPDVTCDDQEDISQDGSR 570 + EW+PD+T +S+ SR Sbjct: 1168 DPEDEWEPDITDAPVSSLSRRRSR 1191
>RNF34_HUMAN (Q969K3) RING finger protein 34 (RING finger protein RIFF)| (FYVE-RING finger protein Momo) (Human RING finger homologous to inhibitor of apoptosis protein) (hRFI) (Caspases-8 and -10-associated RING finger protein 1) (CARP-1) (Caspase regulat Length = 372 Score = 29.6 bits (65), Expect = 7.9 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 13/131 (9%) Frame = +1 Query: 121 ASISPQRLSLAEPMDSSKSPQPLKKSRTMLSGT----DGQQFENDEFPSETASDKTPGLK 288 A++S + L + +S+S P + + S D E+D+ E A D+ PGL Sbjct: 188 ATMSSFQGELMDGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDDEEENAEDRNPGLS 247 Query: 289 SETV-------DKVQDEFGEDSSPLQQSAASN-VSYRGSPCIGAFTIQCARCFKWRLIPT 444 E V + D G L++ A N V+Y G C KW L+ Sbjct: 248 KERVRASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGC------------CEKWELVEK 295 Query: 445 KEK-YEEIREH 474 + Y+E E+ Sbjct: 296 VNRLYKENEEN 306
>MUT_MOUSE (Q8R015) Muted protein| Length = 185 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Frame = +2 Query: 317 NLEKTVPHCSNQLLPTCHTVDRHVLGHSLSSVLGASNG--DLFQRKRSTKKYVSILYRNL 490 NLE T+ + LLP C LG +L + A++ L QR++ KK ++ + Sbjct: 76 NLENTIQETNECLLPKCRETMECGLGETLQRLQAANDSICRLQQREQERKKVIN----DY 131 Query: 491 LTANE 505 LTA+E Sbjct: 132 LTASE 136 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.132 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,839,695 Number of Sequences: 219361 Number of extensions: 2109712 Number of successful extensions: 6033 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 5696 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6014 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
