ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags20p03 |
|---|---|
| Clone Library Name | barley_pub |
>RS8_MAIZE (Q08069) 40S ribosomal protein S8| Length = 221 Score = 62.4 bits (150), Expect = 3e-10 Identities = 32/48 (66%), Positives = 34/48 (70%), Gaps = 2/48 (4%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR--TGHW 138 KAWRKK YELGRQPANTKLSSN T NVKWRALR TG++ Sbjct: 19 KAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNY 66
>RS8_ORYSA (P49199) 40S ribosomal protein S8| Length = 220 Score = 62.4 bits (150), Expect = 3e-10 Identities = 32/48 (66%), Positives = 34/48 (70%), Gaps = 2/48 (4%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR--TGHW 138 KAWRKK YELGRQPANTKLSSN T NVKWRALR TG++ Sbjct: 19 KAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNY 66
>RS8_PRUAR (O81361) 40S ribosomal protein S8| Length = 221 Score = 62.0 bits (149), Expect = 4e-10 Identities = 30/42 (71%), Positives = 30/42 (71%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 KAWRKK YELGRQPANTKLSSN T NVKWRALR Sbjct: 19 KAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
>RS8_ARATH (Q9FIF3) 40S ribosomal protein S8| Length = 210 Score = 60.1 bits (144), Expect = 2e-09 Identities = 29/42 (69%), Positives = 29/42 (69%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 K WRKK YELGRQPANTKLSSN T NVKWRALR Sbjct: 19 KMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
>RS8_YEAST (P05754) 40S ribosomal protein S8 (S14) (YS9) (RP19)| Length = 199 Score = 35.8 bits (81), Expect = 0.033 Identities = 19/40 (47%), Positives = 24/40 (60%) Frame = +1 Query: 7 WRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 +RKK +ELGRQPANTK+ + N K+RALR Sbjct: 20 FRKKRKFELGRQPANTKIGAK-RIHSVRTRGGNKKYRALR 58
>RS8_DROME (Q8MLY8) 40S ribosomal protein S8| Length = 208 Score = 32.7 bits (73), Expect = 0.28 Identities = 20/42 (47%), Positives = 22/42 (52%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 K+ RKK +ELGR ANTKL S N K RALR Sbjct: 19 KSLRKKRKFELGRPAANTKLGSGRV-HKVRTRGGNTKLRALR 59
>RS8_SPOFR (Q8WQI5) 40S ribosomal protein S8| Length = 208 Score = 32.0 bits (71), Expect = 0.48 Identities = 19/39 (48%), Positives = 20/39 (51%) Frame = +1 Query: 10 RKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 RKK YELGR ANTKL N K+RALR Sbjct: 22 RKKRKYELGRPAANTKLGPQ-RIHLVRSRGGNTKYRALR 59
>RS8B_SCHPO (Q9P7B2) 40S ribosomal protein S8-B| Length = 200 Score = 32.0 bits (71), Expect = 0.48 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +1 Query: 7 WRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 +RKK +ELGRQP+NT++ N K+RALR Sbjct: 21 YRKKRKFELGRQPSNTRIGPK-RIHEVRVRGGNKKFRALR 59
>RS8A_SCHPO (O14049) 40S ribosomal protein S8-A| Length = 200 Score = 32.0 bits (71), Expect = 0.48 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +1 Query: 7 WRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 +RKK +ELGRQP+NT++ N K+RALR Sbjct: 21 YRKKRKFELGRQPSNTRIGPK-RIHEVRVRGGNKKFRALR 59
>RS8_ICTPU (Q90YR6) 40S ribosomal protein S8| Length = 207 Score = 31.6 bits (70), Expect = 0.63 Identities = 19/42 (45%), Positives = 21/42 (50%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 K KK YELGR P+NTKL N K+RALR Sbjct: 18 KPVHKKRKYELGRPPSNTKLGPK-RIHTVRVRGGNKKYRALR 58
>RS8_THEPA (Q4N3P0) 40S ribosomal protein S8| Length = 188 Score = 31.2 bits (69), Expect = 0.82 Identities = 18/39 (46%), Positives = 22/39 (56%) Frame = +1 Query: 10 RKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 +KK YELGR +NTKL S N+K+RALR Sbjct: 22 KKKRKYELGRPSSNTKLGSKLV-RKVRCRGGNLKFRALR 59
>RS8_THEAN (Q4UFS9) 40S ribosomal protein S8| Length = 184 Score = 31.2 bits (69), Expect = 0.82 Identities = 18/39 (46%), Positives = 22/39 (56%) Frame = +1 Query: 10 RKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 +KK YELGR +NTKL S N+K+RALR Sbjct: 22 KKKRKYELGRPSSNTKLGSRLV-RKVRCRGGNLKFRALR 59
>RS8_GRIJA (Q9ZT56) 40S ribosomal protein S8| Length = 204 Score = 30.8 bits (68), Expect = 1.1 Identities = 18/38 (47%), Positives = 20/38 (52%) Frame = +1 Query: 13 KKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 KK YELGRQPA TK+ N+K RALR Sbjct: 23 KKRKYELGRQPAMTKIGGKLV-RTVRVRGGNLKSRALR 59
>RS8_RAT (P62243) 40S ribosomal protein S8| Length = 207 Score = 30.8 bits (68), Expect = 1.1 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 K + KK YELGR ANTK+ N K+RALR Sbjct: 18 KPYHKKRKYELGRPAANTKIGPR-RIHTVRVRGGNKKYRALR 58
>RS8_MOUSE (P62242) 40S ribosomal protein S8| Length = 207 Score = 30.8 bits (68), Expect = 1.1 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 K + KK YELGR ANTK+ N K+RALR Sbjct: 18 KPYHKKRKYELGRPAANTKIGPR-RIHTVRVRGGNKKYRALR 58
>RS8_MACFA (Q4R6P8) 40S ribosomal protein S8| Length = 207 Score = 30.8 bits (68), Expect = 1.1 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 K + KK YELGR ANTK+ N K+RALR Sbjct: 18 KPYHKKRKYELGRPAANTKIGPR-RIHTVRVRGGNKKYRALR 58
>RS8_HUMAN (P62241) 40S ribosomal protein S8| Length = 207 Score = 30.8 bits (68), Expect = 1.1 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 K + KK YELGR ANTK+ N K+RALR Sbjct: 18 KPYHKKRKYELGRPAANTKIGPR-RIHTVRVRGGNKKYRALR 58
>RS8_BOVIN (Q5E958) 40S ribosomal protein S8| Length = 207 Score = 30.8 bits (68), Expect = 1.1 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 K + KK YELGR ANTK+ N K+RALR Sbjct: 18 KPYHKKRKYELGRPAANTKIGPR-RIHTVRVRGGNKKYRALR 58
>RS8_BRARE (P62247) 40S ribosomal protein S8| Length = 207 Score = 28.9 bits (63), Expect = 4.1 Identities = 18/42 (42%), Positives = 20/42 (47%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 K KK YELGR ANTK+ N K+RALR Sbjct: 18 KPVHKKRKYELGRPAANTKIGPR-RIHTIRVRGGNKKYRALR 58
>RS8_LEIMA (P25204) 40S ribosomal protein S8| Length = 220 Score = 28.5 bits (62), Expect = 5.3 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 K RK+ ELGR PANT+L + N K RALR Sbjct: 19 KIHRKRMKAELGRLPANTRLGARRV-SPVRARGGNFKIRALR 59
>RS8_CAEEL (P48156) 40S ribosomal protein S8| Length = 208 Score = 28.5 bits (62), Expect = 5.3 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +1 Query: 13 KKXXYELGRQPANTKLSSNXTXXXXXXXXXNVKWRALR 126 KK +ELGR ANTK+ ++ N K+RALR Sbjct: 23 KKRKFELGRPAANTKIGAHRV-RLVRTRGGNEKYRALR 59
>SRBP1_HUMAN (P36956) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) Length = 1147 Score = 28.5 bits (62), Expect = 5.3 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -3 Query: 94 EHGPSSLSCCSKA*CWQADGQAHTXASSSM 5 E GP+SL+ C KA + D A T ASSS+ Sbjct: 936 ESGPASLTICEKASGYLQDSLATTPASSSI 965
>RS8E_PYRKO (Q5JGF3) 30S ribosomal protein S8e| Length = 130 Score = 28.5 bits (62), Expect = 5.3 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +1 Query: 10 RKKXXYELGRQPANTKLSSN 69 RKK ELGR+PANTK+ + Sbjct: 21 RKKRKRELGREPANTKVGED 40
>RS8E_THEAC (Q9HJD0) 30S ribosomal protein S8e| Length = 127 Score = 27.7 bits (60), Expect = 9.1 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +1 Query: 1 KAWRKKXXYELGRQPANTKLSSNXTXXXXXXXXXNVK 111 K RKK +ELGR+P TKL + N K Sbjct: 18 KQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTK 54
>ECR_AEDAE (P49880) Ecdysone receptor (Ecdysteroid receptor)| (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH) Length = 675 Score = 27.7 bits (60), Expect = 9.1 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -3 Query: 145 EVTSVQYXEPSISHYLHEHGPSSLSCCSKA*CWQADGQAHTXASSS 8 E+ VQ PS+ +H HG S S S + ++G ++ +SS+ Sbjct: 566 EIWDVQDIPPSMQAQMHSHGTQSSSSSSSSSSSSSNGSSNGNSSSN 611 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,082,160 Number of Sequences: 219361 Number of extensions: 208087 Number of successful extensions: 388 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 386 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 388 length of database: 80,573,946 effective HSP length: 24 effective length of database: 75,309,282 effective search space used: 1807422768 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
