ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags20p03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ000228.1|HVJ000228 Hordeum vulgare mRNA for expressed sequ... 238 4e-60
2gb|AF542191.1| Triticum aestivum ribosomal protein S8-like mRNA,... 174 5e-41
3gb|BT016470.1| Zea mays clone Contig303 mRNA sequence 147 1e-32
4gb|U64436.1|ZMU64436 Zea mays ribosomal protein S8 mRNA, complet... 147 1e-32
5gb|AY103570.1| Zea mays PCO088401 mRNA sequence 139 3e-30
6dbj|AK068316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 6e-28
7ref|XM_465742.1| Oryza sativa (japonica cultivar-group), mRNA 125 4e-26
8ref|XM_506804.1| PREDICTED Oryza sativa (japonica cultivar-group... 125 4e-26
9dbj|AK102757.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 4e-26
10dbj|AK102402.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 4e-26
11dbj|D38010.1|RICRPS8 Oryza sativa (japonica cultivar-group) mRNA... 125 4e-26
12gb|AY105565.1| Zea mays PCO103958 mRNA sequence 115 4e-23
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 109 2e-21
14gb|BT016841.1| Zea mays clone Contig674 mRNA sequence 107 9e-21
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 107 9e-21
16dbj|AP004837.3| Oryza sativa (japonica cultivar-group) genomic D... 107 9e-21
17dbj|AP004864.3| Oryza sativa (japonica cultivar-group) genomic D... 107 9e-21
18gb|AF071889.1|AF071889 Prunus armeniaca 40S ribosomal protein S8... 92 5e-16
19gb|AY530951.1| Zea mays putative growth-regulating factor 1 (Z21... 82 5e-13
20gb|BT013911.1| Lycopersicon esculentum clone 132908R, mRNA sequence 78 8e-12
21ref|NM_125314.2| Arabidopsis thaliana structural constituent of ... 66 3e-08
22gb|BT013849.1| Lycopersicon esculentum clone 132809F, mRNA sequence 66 3e-08
23gb|BT004603.1| Arabidopsis thaliana At5g59240 gene, complete cds 66 3e-08
24gb|M95064.1|MZEORFE Zea mays putative ribosomal protein S8 mRNA,... 62 5e-07
25gb|DQ226772.1| Boechera divaricarpa isolate SLW-D-F05 mRNA sequence 56 3e-05
26gb|DQ200362.1| Solanum tuberosum clone 054E02 unknown mRNA 54 1e-04
27ref|NM_122036.2| Arabidopsis thaliana structural constituent of ... 48 0.007
28gb|BT013650.1| Lycopersicon esculentum clone 132457R, mRNA sequence 48 0.007
29gb|AY091172.1| Arabidopsis thaliana unknown protein (At5g20290) ... 48 0.007
30gb|AY050937.1| Arabidopsis thaliana unknown protein (At5g20290) ... 48 0.007
31gb|AY061909.1| Arabidopsis thaliana AT5g20290/F5O24_180 mRNA, co... 48 0.007
32gb|AY052338.1| Arabidopsis thaliana AT5g20290/F5O24_180 mRNA, co... 48 0.007
33emb|BX829978.1|CNS0A1LR Arabidopsis thaliana Full-length cDNA Co... 48 0.007
34emb|BX829884.1|CNS0A1CS Arabidopsis thaliana Full-length cDNA Co... 48 0.007
35emb|BX829620.1|CNS0A1JH Arabidopsis thaliana Full-length cDNA Co... 48 0.007
36emb|BX831734.1|CNS0A135 Arabidopsis thaliana Full-length cDNA Co... 48 0.007
37gb|AY086963.1| Arabidopsis thaliana clone 29997 mRNA, complete s... 48 0.007
38dbj|AB016890.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.11
39emb|AJ538848.1|NTA538848 Nicotiana tabacum cDNA-AFLP-fragment BT... 40 1.8
40emb|AJ538847.1|NTA538847 Nicotiana tabacum cDNA-AFLP-fragment BT... 40 1.8
41gb|DQ268855.1| Solanum tuberosum clone 172G07 putative 40S ribos... 40 1.8
42emb|BX901891.12| Zebrafish DNA sequence from clone CH211-175N2 i... 38 7.0
43emb|AL353771.8| Human DNA sequence from clone RP4-677H15 on chro... 38 7.0
44emb|BX005003.10| Zebrafish DNA sequence from clone DKEY-241F8 in... 38 7.0
45emb|CR354426.9| Zebrafish DNA sequence from clone DKEY-48G21 in ... 38 7.0
46gb|L01400.1|POTHMGRI Potato hydroxymethylglutaryl coenzyme A red... 38 7.0 
>emb|AJ000228.1|HVJ000228 Hordeum vulgare mRNA for expressed sequence tag
          Length = 444

 Score =  238 bits (120), Expect = 4e-60
 Identities = 140/147 (95%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcatggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctt 60
           ||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct: 119 aaggcatggaggaagaagcgaaagtatgagcttggccgccagcctgccaacactaagctt 178

                                                                       
Query: 61  tcgagcaacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggct 120
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tcgagcaacaagacagtgaggagggtccgtgttcgtggaggtaatgtgaaatggagggct 238

                                      
Query: 121 ctncgtactggacactggtaacttctc 147
           || ||| ||||||||||||||||||||
Sbjct: 239 ctccgt-ctggacactggtaacttctc 264
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>gb|AF542191.1| Triticum aestivum ribosomal protein S8-like mRNA, complete sequence
          Length = 806

 Score =  174 bits (88), Expect = 5e-41
 Identities = 132/147 (89%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcatggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctt 60
           ||||| ||||||||||||| || ||||||||| ||||| ||||| |||||||||||||||
Sbjct: 135 aaggcttggaggaagaagcgaaagtatgagctcggccgccagccagccaacactaagctt 194

                                                                       
Query: 61  tcgagcaacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggct 120
           || ||||||| ||||| |||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 195 tcaagcaacaagacagtgaggagggtccgtgttcgcggaggtaacgtgaagtggagggct 254

                                      
Query: 121 ctncgtactggacactggtaacttctc 147
           || ||| || |||||||||||||||||
Sbjct: 255 ctccgt-cttgacactggtaacttctc 280
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>gb|BT016470.1| Zea mays clone Contig303 mRNA sequence
          Length = 936

 Score =  147 bits (74), Expect = 1e-32
 Identities = 109/122 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcatggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctt 60
           ||||| ||||||||||||| || |||||||||||| || ||||| |||||||| ||| | 
Sbjct: 114 aaggcctggaggaagaagcgaaagtatgagcttggtcgccagccagccaacaccaagttg 173

                                                                       
Query: 61  tcgagcaacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggct 120
           || ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tcaagcaataagacagtgaggagggtccgtgttcgtggaggtaatgtgaaatggagggct 233

             
Query: 121 ct 122
           ||
Sbjct: 234 ct 235
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>gb|U64436.1|ZMU64436 Zea mays ribosomal protein S8 mRNA, complete cds
          Length = 843

 Score =  147 bits (74), Expect = 1e-32
 Identities = 109/122 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcatggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctt 60
           ||||| ||||||||||||| || |||||||||||| || ||||| |||||||| ||| | 
Sbjct: 92  aaggcctggaggaagaagcgaaagtatgagcttggtcgccagccagccaacaccaagttg 151

                                                                       
Query: 61  tcgagcaacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggct 120
           || ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tcaagcaataagacagtgaggagggtccgtgttcgtggaggtaatgtgaaatggagggct 211

             
Query: 121 ct 122
           ||
Sbjct: 212 ct 213
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>gb|AY103570.1| Zea mays PCO088401 mRNA sequence
          Length = 1107

 Score =  139 bits (70), Expect = 3e-30
 Identities = 108/122 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcatggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctt 60
           ||||| ||||||||||||| || |||||||||||| || ||||| |||||||| ||| | 
Sbjct: 145 aaggcctggaggaagaagcgaaagtatgagcttggtcgccagccagccaacaccaagttg 204

                                                                       
Query: 61  tcgagcaacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggct 120
           || ||||| | ||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 tcaagcaataagacagtgaggagggtccgtgttcggggaggtaatgtgaaatggagggct 264

             
Query: 121 ct 122
           ||
Sbjct: 265 ct 266
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>dbj|AK068316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151C04, full
           insert sequence
          Length = 1022

 Score =  131 bits (66), Expect = 6e-28
 Identities = 119/137 (86%), Gaps = 1/137 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   tggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgagc 66
           ||||||||||||| || |||||||||||| || ||||| || ||||| ||| | ||||||
Sbjct: 159 tggaggaagaagcgaaagtatgagcttggtcgccagccggcaaacaccaagttgtcgagc 218

                                                                       
Query: 67  aacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggctctncgt 126
           |||| ||||| |||||||||||||||||||||||| ||| |||| ||||||||||| || 
Sbjct: 219 aacaagacagtgaggagggtccgtgttcgtggaggaaatctgaagtggagggctcttcg- 277

                            
Query: 127 actggacactggtaact 143
            ||||| ||||||||||
Sbjct: 278 cctggatactggtaact 294
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>ref|XM_465742.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 932

 Score =  125 bits (63), Expect = 4e-26
 Identities = 104/119 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcatggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctt 60
           ||||||||| | ||||||| || ||||||||| ||  | |||||||||||||| ||||| 
Sbjct: 140 aaggcatggcgcaagaagcgaaagtatgagctcggaaggcagcctgccaacaccaagctg 199

                                                                      
Query: 61  tcgagcaacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggc 119
           || ||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 200 tcaagcaacaagacagtgaggagggtgcgtgtccgtggaggtaatgtgaaatggagggc 258
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>ref|XM_506804.1| PREDICTED Oryza sativa (japonica cultivar-group), P0483C08.42 mRNA
          Length = 942

 Score =  125 bits (63), Expect = 4e-26
 Identities = 104/119 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcatggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctt 60
           ||||||||| | ||||||| || ||||||||| ||  | |||||||||||||| ||||| 
Sbjct: 142 aaggcatggcgcaagaagcgaaagtatgagctcggaaggcagcctgccaacaccaagctg 201

                                                                      
Query: 61  tcgagcaacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggc 119
           || ||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 202 tcaagcaacaagacagtgaggagggtgcgtgtccgtggaggtaatgtgaaatggagggc 260
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>dbj|AK102757.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107B18, full
           insert sequence
          Length = 932

 Score =  125 bits (63), Expect = 4e-26
 Identities = 104/119 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcatggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctt 60
           ||||||||| | ||||||| || ||||||||| ||  | |||||||||||||| ||||| 
Sbjct: 140 aaggcatggcgcaagaagcgaaagtatgagctcggaaggcagcctgccaacaccaagctg 199

                                                                      
Query: 61  tcgagcaacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggc 119
           || ||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 200 tcaagcaacaagacagtgaggagggtgcgtgtccgtggaggtaatgtgaaatggagggc 258
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>dbj|AK102402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092J19, full
           insert sequence
          Length = 940

 Score =  125 bits (63), Expect = 4e-26
 Identities = 104/119 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcatggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctt 60
           ||||||||| | ||||||| || ||||||||| ||  | |||||||||||||| ||||| 
Sbjct: 140 aaggcatggcgcaagaagcgaaagtatgagctcggaaggcagcctgccaacaccaagctg 199

                                                                      
Query: 61  tcgagcaacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggc 119
           || ||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 200 tcaagcaacaagacagtgaggagggtgcgtgtccgtggaggtaatgtgaaatggagggc 258
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>dbj|D38010.1|RICRPS8 Oryza sativa (japonica cultivar-group) mRNA for ribosomal protein
           S8, complete cds
          Length = 849

 Score =  125 bits (63), Expect = 4e-26
 Identities = 104/119 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcatggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctt 60
           ||||||||| | ||||||| || ||||||||| ||  | |||||||||||||| ||||| 
Sbjct: 110 aaggcatggcgcaagaagcgaaagtatgagctcggaaggcagcctgccaacaccaagctg 169

                                                                      
Query: 61  tcgagcaacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggc 119
           || ||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 170 tcaagcaacaagacagtgaggagggtgcgtgtccgtggaggtaatgtgaaatggagggc 228
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>gb|AY105565.1| Zea mays PCO103958 mRNA sequence
          Length = 1091

 Score =  115 bits (58), Expect = 4e-23
 Identities = 96/110 (87%)
 Strand = Plus / Plus

                                                                       
Query: 13  aagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgagcaacang 72
           ||||||| || |||||||||||||||||||||||| ||||| || || || ||||| | |
Sbjct: 187 aagaagcgaaagtatgagcttggccgtcagcctgctaacaccaaactgtctagcaataag 246

                                                             
Query: 73  acagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggctct 122
           |||| ||||||||||||||| |||||||| || ||||| |||||||||||
Sbjct: 247 acagtgaggagggtccgtgtccgtggaggcaacgtgaagtggagggctct 296
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  109 bits (55), Expect = 2e-21
 Identities = 104/120 (86%), Gaps = 1/120 (0%)
 Strand = Plus / Minus

                                                                            
Query: 24       gtatgagcttggccgtcagcctgccaacactaagctttcgagcaacangacagngaggag 83
                |||||||||||| || ||||| || ||||| ||| | |||||||||| ||||| ||||||
Sbjct: 16660797 gtatgagcttggtcgccagccggcaaacaccaagttgtcgagcaacaagacagtgaggag 16660738

                                                                            
Query: 84       ggtccgtgttcgtggaggtaatgtgaaatggagggctctncgtactggacactggtaact 143
                |||||||||||||||||| ||| |||| ||||||||||| ||  ||||| ||||||||||
Sbjct: 16660737 ggtccgtgttcgtggaggaaatctgaagtggagggctcttcg-cctggatactggtaact 16660679
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>gb|BT016841.1| Zea mays clone Contig674 mRNA sequence
          Length = 989

 Score =  107 bits (54), Expect = 9e-21
 Identities = 95/110 (86%)
 Strand = Plus / Plus

                                                                       
Query: 13  aagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgagcaacang 72
           ||||||| || ||||||||||||||| |||||||| ||||| || || || ||||| | |
Sbjct: 168 aagaagcgaaagtatgagcttggccgccagcctgctaacaccaaactgtctagcaataag 227

                                                             
Query: 73  acagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggctct 122
           |||| ||||||||||||||| |||||||| || ||||| |||||||||||
Sbjct: 228 acagtgaggagggtccgtgtacgtggaggcaacgtgaagtggagggctct 277
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  107 bits (54), Expect = 9e-21
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                            
Query: 40       cagcctgccaacactaagctttcgagcaacangacagngaggagggtccgtgttcgtgga 99
                |||||||||||||| ||||| || ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 17136269 cagcctgccaacaccaagctgtcaagcaacaagacagtgaggagggtgcgtgtccgtgga 17136328

                                    
Query: 100      ggtaatgtgaaatggagggc 119
                ||||||||||||||||||||
Sbjct: 17136329 ggtaatgtgaaatggagggc 17136348
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>dbj|AP004837.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0483C08
          Length = 143855

 Score =  107 bits (54), Expect = 9e-21
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                          
Query: 40     cagcctgccaacactaagctttcgagcaacangacagngaggagggtccgtgttcgtgga 99
              |||||||||||||| ||||| || ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 117642 cagcctgccaacaccaagctgtcaagcaacaagacagtgaggagggtgcgtgtccgtgga 117701

                                  
Query: 100    ggtaatgtgaaatggagggc 119
              ||||||||||||||||||||
Sbjct: 117702 ggtaatgtgaaatggagggc 117721
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>dbj|AP004864.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0048K16
          Length = 159891

 Score =  107 bits (54), Expect = 9e-21
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                        
Query: 40   cagcctgccaacactaagctttcgagcaacangacagngaggagggtccgtgttcgtgga 99
            |||||||||||||| ||||| || ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 7036 cagcctgccaacaccaagctgtcaagcaacaagacagtgaggagggtgcgtgtccgtgga 7095

                                
Query: 100  ggtaatgtgaaatggagggc 119
            ||||||||||||||||||||
Sbjct: 7096 ggtaatgtgaaatggagggc 7115
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>gb|AF071889.1|AF071889 Prunus armeniaca 40S ribosomal protein S8 (RPS8) mRNA, complete cds
          Length = 1049

 Score = 91.7 bits (46), Expect = 5e-16
 Identities = 102/122 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcatggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctt 60
           ||||||||||||||||||  || ||||||||| || ||||||||||| || |||||||||
Sbjct: 133 aaggcatggaggaagaagagaaagtatgagctcggtcgtcagcctgcaaatactaagctt 192

                                                                       
Query: 61  tcgagcaacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggct 120
           || ||||||| ||| |  ||| |  ||||||| || ||||| |||||||| ||||| |||
Sbjct: 193 tcaagcaacaagactgttaggcgaatccgtgtgcggggaggcaatgtgaagtggagagct 252

             
Query: 121 ct 122
           ||
Sbjct: 253 ct 254
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>gb|AY530951.1| Zea mays putative growth-regulating factor 1 (Z214A02.12), putative 40S
              ribosomal protein S8 (Z214A02.25), and putative casein
              kinase I (Z214A02.27) genes, complete cds
          Length = 158797

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                          
Query: 24     gtatgagcttggccgtcagcctgccaacactaagctttcgagcaacangacagngaggag 83
              ||||||||||||||| |||||||| ||||| || || || ||||| | ||||| ||||||
Sbjct: 137278 gtatgagcttggccgccagcctgctaacaccaaactgtctagcaataagacagtgaggag 137337

                                                     
Query: 84     ggtccgtgttcgtggaggtaatgtgaaatggagggctct 122
              ||||||||| |||||||| ||   ||| |||||||||||
Sbjct: 137338 ggtccgtgtccgtggaggcaacacgaagtggagggctct 137376
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>gb|BT013911.1| Lycopersicon esculentum clone 132908R, mRNA sequence
          Length = 833

 Score = 77.8 bits (39), Expect = 8e-12
 Identities = 95/115 (82%)
 Strand = Plus / Plus

                                                                       
Query: 5   catggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcga 64
           ||||||||||||||| || ||| |||||||||||||||||||| || |||||| | || |
Sbjct: 117 catggaggaagaagcgaaagtacgagcttggccgtcagcctgctaatactaagatctcta 176

                                                                  
Query: 65  gcaacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggc 119
           | |||| |||||  ||  |  | ||||||||||| || ||||| |||||||||||
Sbjct: 177 gtaacaagacagtcagacgcattcgtgttcgtggtggcaatgttaaatggagggc 231
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>ref|NM_125314.2| Arabidopsis thaliana structural constituent of ribosome AT5G59240
           mRNA, complete cds
          Length = 851

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                       
Query: 7   tggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgagc 66
           ||||||||||||| || ||||||||||||  | || || || ||||||||||| || || 
Sbjct: 124 tggaggaagaagcgaaagtatgagcttggaagacaaccagctaacactaagctgtcaagt 183

                                                    
Query: 67  aacangacagngaggagggtccgtgttcgtggaggtaatgt 107
           |||| ||| | ||||||| ||||||| ||||| || |||||
Sbjct: 184 aacaagacggtgaggaggatccgtgtgcgtggtgggaatgt 224
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>gb|BT013849.1| Lycopersicon esculentum clone 132809F, mRNA sequence
          Length = 879

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                       
Query: 7   tggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgagc 66
           ||||||||||||| || |||||| |||||||| |||||||| || |||||||| || |  
Sbjct: 120 tggaggaagaagcgaaagtatgaacttggccgccagcctgctaatactaagctctcaaat 179

                                                                
Query: 67  aacangacagngaggagggtccgtgttcgtggaggtaatgtgaaatggagggc 119
           |||| |||||  ||  |  ||||||| ||||| |||||||| || ||||||||
Sbjct: 180 aacaagacagtcagacgaatccgtgtgcgtggtggtaatgtaaagtggagggc 232
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>gb|BT004603.1| Arabidopsis thaliana At5g59240 gene, complete cds
          Length = 633

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                       
Query: 7   tggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgagc 66
           ||||||||||||| || ||||||||||||  | || || || ||||||||||| || || 
Sbjct: 61  tggaggaagaagcgaaagtatgagcttggaagacaaccagctaacactaagctgtcaagt 120

                                                    
Query: 67  aacangacagngaggagggtccgtgttcgtggaggtaatgt 107
           |||| ||| | ||||||| ||||||| ||||| || |||||
Sbjct: 121 aacaagacggtgaggaggatccgtgtgcgtggtgggaatgt 161
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>gb|M95064.1|MZEORFE Zea mays putative ribosomal protein S8 mRNA, partial cds
          Length = 163

 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 1   aaggcatggaggaagaagcnaangtatgagcttggccgtcagcctgccaacac 53
           ||||| ||||||||||||| || |||||||||||| || ||||| ||||||||
Sbjct: 93  aaggcctggaggaagaagcgaaagtatgagcttggtcgccagccagccaacac 145
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>gb|DQ226772.1| Boechera divaricarpa isolate SLW-D-F05 mRNA sequence
          Length = 267

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                       
Query: 6   atggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgag 65
           |||||||||||||| || ||||||| | ||  | |||||||||||||| ||||| || ||
Sbjct: 48  atggaggaagaagcgaaagtatgagatgggaaggcagcctgccaacaccaagctctcaag 107

                    
Query: 66  caacangac 74
           ||||| |||
Sbjct: 108 caacaagac 116
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>gb|DQ200362.1| Solanum tuberosum clone 054E02 unknown mRNA
          Length = 856

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 7   tggaggaagaagcnaangtatgagcttggccgtcagcctgc 47
           ||||||||||||| || |||||| |||||||| ||||||||
Sbjct: 73  tggaggaagaagcgaaagtatgaacttggccgccagcctgc 113
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>ref|NM_122036.2| Arabidopsis thaliana structural constituent of ribosome AT5G20290
           mRNA, complete cds
          Length = 934

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 6   atggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgag 65
           |||||||||||||| || ||||||| | ||  | ||||| |||||||| ||||| || ||
Sbjct: 111 atggaggaagaagcgaaagtatgagatgggaaggcagccagccaacaccaagctctcaag 170

                    
Query: 66  caacangac 74
           ||||| |||
Sbjct: 171 caacaagac 179
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>gb|BT013650.1| Lycopersicon esculentum clone 132457R, mRNA sequence
          Length = 970

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 1   aaggcatggaggaagaagcnaangtatgag 30
           ||||||||||||||||||| || |||||||
Sbjct: 126 aaggcatggaggaagaagcgaaagtatgag 155
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>gb|AY091172.1| Arabidopsis thaliana unknown protein (At5g20290) mRNA, complete cds
          Length = 700

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 6   atggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgag 65
           |||||||||||||| || ||||||| | ||  | ||||| |||||||| ||||| || ||
Sbjct: 60  atggaggaagaagcgaaagtatgagatgggaaggcagccagccaacaccaagctctcaag 119

                    
Query: 66  caacangac 74
           ||||| |||
Sbjct: 120 caacaagac 128
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>gb|AY050937.1| Arabidopsis thaliana unknown protein (At5g20290) mRNA, complete cds
          Length = 940

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 6   atggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgag 65
           |||||||||||||| || ||||||| | ||  | ||||| |||||||| ||||| || ||
Sbjct: 101 atggaggaagaagcgaaagtatgagatgggaaggcagccagccaacaccaagctctcaag 160

                    
Query: 66  caacangac 74
           ||||| |||
Sbjct: 161 caacaagac 169
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>gb|AY061909.1| Arabidopsis thaliana AT5g20290/F5O24_180 mRNA, complete cds
          Length = 669

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 6   atggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgag 65
           |||||||||||||| || ||||||| | ||  | ||||| |||||||| ||||| || ||
Sbjct: 60  atggaggaagaagcgaaagtatgagatgggaaggcagccagccaacaccaagctctcaag 119

                    
Query: 66  caacangac 74
           ||||| |||
Sbjct: 120 caacaagac 128
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>gb|AY052338.1| Arabidopsis thaliana AT5g20290/F5O24_180 mRNA, complete cds
          Length = 895

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 6   atggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgag 65
           |||||||||||||| || ||||||| | ||  | ||||| |||||||| ||||| || ||
Sbjct: 111 atggaggaagaagcgaaagtatgagatgggaaggcagccagccaacaccaagctctcaag 170

                    
Query: 66  caacangac 74
           ||||| |||
Sbjct: 171 caacaagac 179
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>emb|BX829978.1|CNS0A1LR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB51ZB03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 878

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 6   atggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgag 65
           |||||||||||||| || ||||||| | ||  | ||||| |||||||| ||||| || ||
Sbjct: 95  atggaggaagaagcgaaagtatgagatgggaaggcagccagccaacaccaagctctcaag 154

                    
Query: 66  caacangac 74
           ||||| |||
Sbjct: 155 caacaagac 163
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>emb|BX829884.1|CNS0A1CS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB43ZC05 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 881

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 6   atggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgag 65
           |||||||||||||| || ||||||| | ||  | ||||| |||||||| ||||| || ||
Sbjct: 95  atggaggaagaagcgaaagtatgagatgggaaggcagccagccaacaccaagctctcaag 154

                    
Query: 66  caacangac 74
           ||||| |||
Sbjct: 155 caacaagac 163
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>emb|BX829620.1|CNS0A1JH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB25ZC11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 881

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 6   atggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgag 65
           |||||||||||||| || ||||||| | ||  | ||||| |||||||| ||||| || ||
Sbjct: 95  atggaggaagaagcgaaagtatgagatgggaaggcagccagccaacaccaagctctcaag 154

                    
Query: 66  caacangac 74
           ||||| |||
Sbjct: 155 caacaagac 163
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>emb|BX831734.1|CNS0A135 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH26ZH03 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 867

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 6   atggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgag 65
           |||||||||||||| || ||||||| | ||  | ||||| |||||||| ||||| || ||
Sbjct: 81  atggaggaagaagcgaaagtatgagatgggaaggcagccagccaacaccaagctctcaag 140

                    
Query: 66  caacangac 74
           ||||| |||
Sbjct: 141 caacaagac 149
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>gb|AY086963.1| Arabidopsis thaliana clone 29997 mRNA, complete sequence
          Length = 895

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 6   atggaggaagaagcnaangtatgagcttggccgtcagcctgccaacactaagctttcgag 65
           |||||||||||||| || ||||||| | ||  | ||||| |||||||| ||||| || ||
Sbjct: 111 atggaggaagaagcgaaagtatgagatgggaaggcagccagccaacaccaagctctcaag 170

                    
Query: 66  caacangac 74
           ||||| |||
Sbjct: 171 caacaagac 179
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>dbj|AB016890.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC17
          Length = 75803

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                         
Query: 24    gtatgagcttggccgtcagcctgccaacactaagctttcgagcaacangacagngaggag 83
             ||||||||||||  | || || || ||||||||||| || || |||| ||| | ||||||
Sbjct: 42554 gtatgagcttggaagacaaccagctaacactaagctgtcaagtaacaagacggtgaggag 42495

                                     
Query: 84    ggtccgtgttcgtggaggtaatgt 107
             | ||||||| ||||| || |||||
Sbjct: 42494 gatccgtgtgcgtggtgggaatgt 42471
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>emb|AJ538848.1|NTA538848 Nicotiana tabacum cDNA-AFLP-fragment BT2-M12-050
          Length = 202

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 88  cgtgttcgtggaggtaatgtgaaatggagggc 119
           ||||| ||||| || |||||||||||||||||
Sbjct: 13  cgtgtgcgtggtggcaatgtgaaatggagggc 44
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>emb|AJ538847.1|NTA538847 Nicotiana tabacum cDNA-AFLP-fragment BT2-M12-037
          Length = 202

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 88  cgtgttcgtggaggtaatgtgaaatggagggc 119
           ||||| ||||| || |||||||||||||||||
Sbjct: 13  cgtgtgcgtggtggcaatgtgaaatggagggc 44
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>gb|DQ268855.1| Solanum tuberosum clone 172G07 putative 40S ribosomal protein
          S8-like protein mRNA, complete cds
          Length = 932

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                    
Query: 5  catggaggaagaagcnaangtatgag 30
          ||||||||||||||| || |||||||
Sbjct: 69 catggaggaagaagcgaaagtatgag 94
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>emb|BX901891.12| Zebrafish DNA sequence from clone CH211-175N2 in linkage group 1,
             complete sequence
          Length = 148678

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 126   tactggacactggtaactt 144
             |||||||||||||||||||
Sbjct: 19717 tactggacactggtaactt 19735
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>emb|AL353771.8| Human DNA sequence from clone RP4-677H15 on chromosome 1p31.3-32.3
             Contains gene FLJ20331, two novel genes, the SFRS11 gene
             for arginine/serine-rich 11 splicing factor and the 3' end
             of gene DKFZP566D1346, complete sequence
          Length = 131612

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    ggaggtaatgtgaaatgga 115
             |||||||||||||||||||
Sbjct: 64470 ggaggtaatgtgaaatgga 64488
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>emb|BX005003.10| Zebrafish DNA sequence from clone DKEY-241F8 in linkage group 13,
            complete sequence
          Length = 172889

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 95   gtggaggtaatgtgaaatg 113
            |||||||||||||||||||
Sbjct: 7106 gtggaggtaatgtgaaatg 7124
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>emb|CR354426.9| Zebrafish DNA sequence from clone DKEY-48G21 in linkage group 1,
             complete sequence
          Length = 196432

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 126   tactggacactggtaactt 144
             |||||||||||||||||||
Sbjct: 52486 tactggacactggtaactt 52468
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>gb|L01400.1|POTHMGRI Potato hydroxymethylglutaryl coenzyme A reductase (hmgr) mRNA,
            complete cds
          Length = 2379

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 127  actggacactggtaacttc 145
            |||||||||||||||||||
Sbjct: 2278 actggacactggtaacttc 2260


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 784,122
Number of Sequences: 3902068
Number of extensions: 784122
Number of successful extensions: 47470
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47375
Number of HSP's gapped (non-prelim): 93
length of query: 147
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 126
effective length of database: 17,151,101,840
effective search space: 2161038831840
effective search space used: 2161038831840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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