ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags20o14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463864.1| Oryza sativa (japonica cultivar-group), mRNA 103 4e-19
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
3dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
4dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
5gb|AY105861.1| Zea mays PCO080437 mRNA sequence 103 4e-19
6dbj|AK102050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
7emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 46 0.088
8dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 46 0.088
9emb|AL954377.12| Mouse DNA sequence from clone RP24-235M10 on ch... 44 0.35
10gb|AY844499.1| Physalaemus cuvieri Rag-1 gene, partial cds 42 1.4
11gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 5.4
12gb|AC104516.2| Drosophila melanogaster clone BACR20O17, complete... 40 5.4
13ref|XM_370507.1| Magnaporthe grisea 70-15 chromosome II predicte... 40 5.4
14gb|BC061756.1| Rattus norvegicus ribophorin I, mRNA (cDNA clone ... 40 5.4
15gb|AC113320.7| Mus musculus chromosome 6, clone RP23-445E16, com... 40 5.4
16emb|BX284651.5| Mouse DNA sequence from clone RP23-308C21 on chr... 40 5.4
17ref|XM_721226.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 5.4
18ref|XM_669571.1| Plasmodium berghei strain ANKA hypothetical pro... 40 5.4
19gb|AC137119.7| Mus musculus chromosome 6, clone RP23-252K4, comp... 40 5.4
20ref|NM_013067.1| Rattus norvegicus ribophorin I (Rpn1), mRNA 40 5.4
21emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 5.4
22emb|CR388386.12| Zebrafish DNA sequence from clone DKEY-253N6 in... 40 5.4
23dbj|AB218617.1| Rattus norvegicus genomic DNA, chromosome 4, clo... 40 5.4
24gb|AC021192.7| Homo sapiens BAC clone RP11-767N15 from 4, comple... 40 5.4
25dbj|AB100593.1| Rattus norvegicus Rpn1 mRNA for ribophorin1, com... 40 5.4
26emb|BX649585.4| Zebrafish DNA sequence from clone CH211-123B7 in... 40 5.4
27emb|X05300.1|RNRIBI Rat mRNA for ribophorin I 40 5.4
28gb|AE003510.5| Drosophila melanogaster chromosome X, section 62 ... 40 5.4
29emb|AL831710.8| Mouse DNA sequence from clone RP23-29K19 on chro... 40 5.4 
>ref|XM_463864.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2013

 Score =  103 bits (52), Expect = 4e-19
 Identities = 138/167 (82%), Gaps = 6/167 (3%)
 Strand = Plus / Plus

                                                                        
Query: 232  gcatgcactgaacaattggataatttggatataaaaagcgagaccgaggaaggtgtcagt 291
            ||||||| |||| | ||||||||||||||||| ||||||||  | ||||||||||||  |
Sbjct: 1124 gcatgcattgaagagttggataatttggatatcaaaagcgactctgaggaaggtgtcgat 1183

                                                                        
Query: 292  gtcagtgcatcttttgtagatgatgagagcagtgagcaaagttgggccctgaggtccttg 351
                   ||||| ||| |||||||| |||||||||||| ||||||||  |||||||||| 
Sbjct: 1184 t------catctcttgcagatgatgggagcagtgagcagagttgggcgttgaggtcctta 1237

                                                           
Query: 352  tccgaatcaactgtagcatgtgttactagtgactatgccatgcaaaa 398
            || ||||| |||||||||||  | || ||||||||||||||||||||
Sbjct: 1238 tctgaatctactgtagcatgcataaccagtgactatgccatgcaaaa 1284



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 52  tctgaaaatggtttggattccgtggatggcccttc 86
           ||||||||||||||| || | ||||||||||||||
Sbjct: 959 tctgaaaatggtttgaatccagtggatggcccttc 993
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score =  103 bits (52), Expect = 4e-19
 Identities = 138/167 (82%), Gaps = 6/167 (3%)
 Strand = Plus / Plus

                                                                          
Query: 232    gcatgcactgaacaattggataatttggatataaaaagcgagaccgaggaaggtgtcagt 291
              ||||||| |||| | ||||||||||||||||| ||||||||  | ||||||||||||  |
Sbjct: 787477 gcatgcattgaagagttggataatttggatatcaaaagcgactctgaggaaggtgtcgat 787536

                                                                          
Query: 292    gtcagtgcatcttttgtagatgatgagagcagtgagcaaagttgggccctgaggtccttg 351
                     ||||| ||| |||||||| |||||||||||| ||||||||  |||||||||| 
Sbjct: 787537 t------catctcttgcagatgatgggagcagtgagcagagttgggcgttgaggtcctta 787590

                                                             
Query: 352    tccgaatcaactgtagcatgtgttactagtgactatgccatgcaaaa 398
              || ||||| |||||||||||  | || ||||||||||||||||||||
Sbjct: 787591 tctgaatctactgtagcatgcataaccagtgactatgccatgcaaaa 787637



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 52     tctgaaaatggtttggattccgtggatggcccttc 86
              ||||||||||||||| || | ||||||||||||||
Sbjct: 787312 tctgaaaatggtttgaatccagtggatggcccttc 787346
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>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0036E06
          Length = 137926

 Score =  103 bits (52), Expect = 4e-19
 Identities = 138/167 (82%), Gaps = 6/167 (3%)
 Strand = Plus / Plus

                                                                         
Query: 232   gcatgcactgaacaattggataatttggatataaaaagcgagaccgaggaaggtgtcagt 291
             ||||||| |||| | ||||||||||||||||| ||||||||  | ||||||||||||  |
Sbjct: 65608 gcatgcattgaagagttggataatttggatatcaaaagcgactctgaggaaggtgtcgat 65667

                                                                         
Query: 292   gtcagtgcatcttttgtagatgatgagagcagtgagcaaagttgggccctgaggtccttg 351
                    ||||| ||| |||||||| |||||||||||| ||||||||  |||||||||| 
Sbjct: 65668 t------catctcttgcagatgatgggagcagtgagcagagttgggcgttgaggtcctta 65721

                                                            
Query: 352   tccgaatcaactgtagcatgtgttactagtgactatgccatgcaaaa 398
             || ||||| |||||||||||  | || ||||||||||||||||||||
Sbjct: 65722 tctgaatctactgtagcatgcataaccagtgactatgccatgcaaaa 65768



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 52    tctgaaaatggtttggattccgtggatggcccttc 86
             ||||||||||||||| || | ||||||||||||||
Sbjct: 65443 tctgaaaatggtttgaatccagtggatggcccttc 65477
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>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1399_H05
          Length = 147670

 Score =  103 bits (52), Expect = 4e-19
 Identities = 138/167 (82%), Gaps = 6/167 (3%)
 Strand = Plus / Plus

                                                                          
Query: 232    gcatgcactgaacaattggataatttggatataaaaagcgagaccgaggaaggtgtcagt 291
              ||||||| |||| | ||||||||||||||||| ||||||||  | ||||||||||||  |
Sbjct: 144372 gcatgcattgaagagttggataatttggatatcaaaagcgactctgaggaaggtgtcgat 144431

                                                                          
Query: 292    gtcagtgcatcttttgtagatgatgagagcagtgagcaaagttgggccctgaggtccttg 351
                     ||||| ||| |||||||| |||||||||||| ||||||||  |||||||||| 
Sbjct: 144432 t------catctcttgcagatgatgggagcagtgagcagagttgggcgttgaggtcctta 144485

                                                             
Query: 352    tccgaatcaactgtagcatgtgttactagtgactatgccatgcaaaa 398
              || ||||| |||||||||||  | || ||||||||||||||||||||
Sbjct: 144486 tctgaatctactgtagcatgcataaccagtgactatgccatgcaaaa 144532



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 52     tctgaaaatggtttggattccgtggatggcccttc 86
              ||||||||||||||| || | ||||||||||||||
Sbjct: 144207 tctgaaaatggtttgaatccagtggatggcccttc 144241
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>gb|AY105861.1| Zea mays PCO080437 mRNA sequence
          Length = 568

 Score =  103 bits (52), Expect = 4e-19
 Identities = 79/88 (89%)
 Strand = Plus / Plus

                                                                       
Query: 314 atgagagcagtgagcaaagttgggccctgaggtccttgtccgaatcaactgtagcatgtg 373
           |||||||||| || || |||||||||||||||||||| || ||||||||| |||||||||
Sbjct: 94  atgagagcagcgaacagagttgggccctgaggtccttatctgaatcaactatagcatgtg 153

                                       
Query: 374 ttactagtgactatgccatgcaaaacgt 401
           |||||||||| || || |||||||||||
Sbjct: 154 ttactagtgattacgcgatgcaaaacgt 181
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>dbj|AK102050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082B02, full
            insert sequence
          Length = 2009

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 137/167 (82%), Gaps = 6/167 (3%)
 Strand = Plus / Plus

                                                                        
Query: 232  gcatgcactgaacaattggataatttggatataaaaagcgagaccgaggaaggtgtcagt 291
            ||||||| |||| | ||||||||||||||||| ||||||||  | ||||||||||||  |
Sbjct: 1120 gcatgcattgaagagttggataatttggatatcaaaagcgactctgaggaaggtgtcgat 1179

                                                                        
Query: 292  gtcagtgcatcttttgtagatgatgagagcagtgagcaaagttgggccctgaggtccttg 351
                   ||||| ||| |||||||| |||||||||||| ||||||||  |||||||||| 
Sbjct: 1180 t------catctcttgcagatgatgggagcagtgagcagagttgggcgttgaggtcctta 1233

                                                           
Query: 352  tccgaatcaactgtagcatgtgttactagtgactatgccatgcaaaa 398
            || ||||| |||||||||||  | || |||| |||||||||||||||
Sbjct: 1234 tctgaatctactgtagcatgcataaccagtggctatgccatgcaaaa 1280



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 52  tctgaaaatggtttggattccgtggatggcccttc 86
           ||||||||||||||| || | ||||||||||||||
Sbjct: 955 tctgaaaatggtttgaatccagtggatggcccttc 989
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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 279     ggaaggtgtcagtgtcagtgcatcttt 305
               ||||| |||||||||||||||||||||
Sbjct: 3667002 ggaagctgtcagtgtcagtgcatcttt 3667028
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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 279     ggaaggtgtcagtgtcagtgcatcttt 305
               ||||| |||||||||||||||||||||
Sbjct: 3758298 ggaagctgtcagtgtcagtgcatcttt 3758324
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>emb|AL954377.12| Mouse DNA sequence from clone RP24-235M10 on chromosome 4, complete
             sequence
          Length = 59149

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 10    acaagttctgttgctccaacag 31
             ||||||||||||||||||||||
Sbjct: 16118 acaagttctgttgctccaacag 16139
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>gb|AY844499.1| Physalaemus cuvieri Rag-1 gene, partial cds
          Length = 428

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 129 atctcaggaagaggatgaacc 149
           |||||||||||||||||||||
Sbjct: 46  atctcaggaagaggatgaacc 66
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 149     ccaaatttgctggagatcaa 168
               ||||||||||||||||||||
Sbjct: 2961818 ccaaatttgctggagatcaa 2961799
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>gb|AC104516.2| Drosophila melanogaster clone BACR20O17, complete sequence
          Length = 174404

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   caggaagaggatgaacccaa 152
             ||||||||||||||||||||
Sbjct: 75408 caggaagaggatgaacccaa 75427
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>ref|XM_370507.1| Magnaporthe grisea 70-15 chromosome II predicted protein
           (MG07004.4) partial mRNA
          Length = 357

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  gttgctccaacagtcgatga 38
           ||||||||||||||||||||
Sbjct: 316 gttgctccaacagtcgatga 297
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>gb|BC061756.1| Rattus norvegicus ribophorin I, mRNA (cDNA clone MGC:72518
            IMAGE:5600029), complete cds
          Length = 2238

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  actattgagggtagagatgt 224
            ||||||||||||||||||||
Sbjct: 1543 actattgagggtagagatgt 1524
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>gb|AC113320.7| Mus musculus chromosome 6, clone RP23-445E16, complete sequence
          Length = 267708

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 92    ttccagagaaaacaaggtcaaata 115
             |||| |||||||||||||||||||
Sbjct: 49836 ttcctgagaaaacaaggtcaaata 49813
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>emb|BX284651.5| Mouse DNA sequence from clone RP23-308C21 on chromosome X, complete
             sequence
          Length = 109915

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    gttccagagaaaacaaggtc 110
             ||||||||||||||||||||
Sbjct: 79739 gttccagagaaaacaaggtc 79758
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>ref|XM_721226.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00071)
            partial mRNA
          Length = 8211

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 245  aattggataatttggatataaaaa 268
            |||||||||||||||| |||||||
Sbjct: 7507 aattggataatttggacataaaaa 7484
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>ref|XM_669571.1| Plasmodium berghei strain ANKA hypothetical protein (PB000049.00.0)
            partial mRNA
          Length = 2382

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 245  aattggataatttggatataaaaa 268
            |||||||||||||||| |||||||
Sbjct: 1909 aattggataatttggacataaaaa 1886
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>gb|AC137119.7| Mus musculus chromosome 6, clone RP23-252K4, complete sequence
          Length = 226354

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 92     ttccagagaaaacaaggtcaaata 115
              |||| |||||||||||||||||||
Sbjct: 152907 ttcctgagaaaacaaggtcaaata 152884
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>ref|NM_013067.1| Rattus norvegicus ribophorin I (Rpn1), mRNA
          Length = 2214

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  actattgagggtagagatgt 224
            ||||||||||||||||||||
Sbjct: 1544 actattgagggtagagatgt 1525
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 149     ccaaatttgctggagatcaa 168
               ||||||||||||||||||||
Sbjct: 3049078 ccaaatttgctggagatcaa 3049059
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>emb|CR388386.12| Zebrafish DNA sequence from clone DKEY-253N6 in linkage group 22,
             complete sequence
          Length = 143089

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    agaaaacaaggtcaaatact 117
             ||||||||||||||||||||
Sbjct: 59626 agaaaacaaggtcaaatact 59645
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>dbj|AB218617.1| Rattus norvegicus genomic DNA, chromosome 4, clone: CH230-65K18,
             complete sequence
          Length = 193613

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   actattgagggtagagatgt 224
             ||||||||||||||||||||
Sbjct: 66167 actattgagggtagagatgt 66148
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>gb|AC021192.7| Homo sapiens BAC clone RP11-767N15 from 4, complete sequence
          Length = 202563

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    ccagagaaaacaaggtcaaa 113
             ||||||||||||||||||||
Sbjct: 65427 ccagagaaaacaaggtcaaa 65408
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>dbj|AB100593.1| Rattus norvegicus Rpn1 mRNA for ribophorin1, complete cds, strain:
            F344/Crj
          Length = 1821

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  actattgagggtagagatgt 224
            ||||||||||||||||||||
Sbjct: 1539 actattgagggtagagatgt 1520
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>emb|BX649585.4| Zebrafish DNA sequence from clone CH211-123B7 in linkage group 22,
             complete sequence
          Length = 153749

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    agaaaacaaggtcaaatact 117
             ||||||||||||||||||||
Sbjct: 87213 agaaaacaaggtcaaatact 87194
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>emb|X05300.1|RNRIBI Rat mRNA for ribophorin I
          Length = 2214

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  actattgagggtagagatgt 224
            ||||||||||||||||||||
Sbjct: 1544 actattgagggtagagatgt 1525
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>gb|AE003510.5| Drosophila melanogaster chromosome X, section 62 of 74 of the complete
              sequence
          Length = 297236

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    caggaagaggatgaacccaa 152
              ||||||||||||||||||||
Sbjct: 250083 caggaagaggatgaacccaa 250102
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>emb|AL831710.8| Mouse DNA sequence from clone RP23-29K19 on chromosome 4, complete
              sequence
          Length = 191635

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 235    tgcactgaacaattggataatttg 258
              ||||||||||||||||||| ||||
Sbjct: 129025 tgcactgaacaattggatattttg 129002


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,748,707
Number of Sequences: 3902068
Number of extensions: 3748707
Number of successful extensions: 72427
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72280
Number of HSP's gapped (non-prelim): 147
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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