ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags21c24 |
|---|---|
| Clone Library Name | barley_pub |
>LSPI_CARPA (P80691) Latex serine proteinase inhibitor| Length = 184 Score = 38.5 bits (88), Expect = 0.013 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%) Frame = -2 Query: 279 GGPPLTV*GAGS-----VLSAKDQFDNG-PVIFSEVVQISDNEPSESCRCTRRFQLLLDV 118 GG LTV G G+ + +D FDNG P+IFS + + DN ES +F + ++ Sbjct: 30 GGGGLTVYGPGNKKKCPLSVVQDPFDNGEPIIFSAIKNVKDNIVFESVDLNVKFNITINC 89 Query: 117 F*TTSW 100 TT+W Sbjct: 90 NETTAW 95
>VSGP_EBOSM (P60173) Pre-small/secreted glycoprotein precursor (pre-sGP)| [Contains: Small/secreted glycoprotein (sGP); Delta-peptide] Length = 372 Score = 30.8 bits (68), Expect = 2.8 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +2 Query: 92 HFPQLVVQKTSSNNWKRRVHLQLSLGSLSEIWTTSLNITGPLSNWSFADNTLPAP 256 H PQ + Q + ++H QLS + IWT NI + W+F +N +P Sbjct: 248 HTPQFLFQLNDTI----QLHQQLSNTTGKLIWTLDANINADIGEWAFWENKKISP 298
>VSGP_EBOSB (P60172) Pre-small/secreted glycoprotein precursor (pre-sGP)| [Contains: Small/secreted glycoprotein (sGP); Delta-peptide] Length = 372 Score = 30.8 bits (68), Expect = 2.8 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +2 Query: 92 HFPQLVVQKTSSNNWKRRVHLQLSLGSLSEIWTTSLNITGPLSNWSFADNTLPAP 256 H PQ + Q + ++H QLS + IWT NI + W+F +N +P Sbjct: 248 HTPQFLFQLNDTI----QLHQQLSNTTGKLIWTLDANINADIGEWAFWENKKISP 298
>POLG_CSFVA (P19712) Genome polyprotein [Contains: N-terminal protease (EC| 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1 (gp33); Envelope glycoprotein E2 (gp55); p7; Nonstructural protein 2 Length = 3898 Score = 30.8 bits (68), Expect = 2.8 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = +2 Query: 362 IDVAVLDQFLVDSTKELKSLFPSWADMTVFTTFFSTYHL*TLYNCKSVYLGGE 520 +DVA L L+ L +F WAD+ TY L LY K V +G E Sbjct: 1271 LDVAGL---LLQCVPTLLMVFTMWADILTLILILPTYELTKLYYLKEVKIGAE 1320
>CAD13_MOUSE (Q9WTR5) Cadherin-13 precursor (Truncated-cadherin) (T-cadherin)| (T-cad) (Heart-cadherin) (H-cadherin) Length = 714 Score = 30.4 bits (67), Expect = 3.6 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -2 Query: 387 NWSSTATSILSGSEEFASNQKDQFSLLCPVSRQIYDGGPPLTV*GAGSVL-SAKDQFDNG 211 N + T++L F N S+ + I G PP T G G++L + +D DN Sbjct: 530 NGTVDTTAVLDRESPFVHN-----SVYTALFLAIDSGNPPAT--GTGTLLITLEDINDNA 582 Query: 210 PVIFSEVVQISDN 172 PVI+ V ++ D+ Sbjct: 583 PVIYPTVAEVCDD 595
>VGP_EBOSM (Q66798) Structural glycoprotein precursor (Virion spike| glycoprotein) [Contains: GP1; GP2] Length = 676 Score = 30.4 bits (67), Expect = 3.6 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = +2 Query: 92 HFPQLVVQKTSSNNWKRRVHLQLSLGSLSEIWTTSLNITGPLSNWSFADNTLPAPQTVSG 271 H PQ + Q + ++H QLS + IWT NI + W+F +N + + G Sbjct: 248 HTPQFLFQLNDTI----QLHQQLSNTTGKLIWTLDANINADIGEWAFWENKKNLSEQLRG 303 Query: 272 GPPSY 286 S+ Sbjct: 304 EELSF 308
>VGP_EBOSB (Q66814) Structural glycoprotein precursor (Virion spike| glycoprotein) [Contains: GP1; GP2] Length = 676 Score = 30.4 bits (67), Expect = 3.6 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = +2 Query: 92 HFPQLVVQKTSSNNWKRRVHLQLSLGSLSEIWTTSLNITGPLSNWSFADNTLPAPQTVSG 271 H PQ + Q + ++H QLS + IWT NI + W+F +N + + G Sbjct: 248 HTPQFLFQLNDTI----QLHQQLSNTTGKLIWTLDANINADIGEWAFWENKKNLSEQLRG 303 Query: 272 GPPSY 286 S+ Sbjct: 304 EELSF 308
>SSN2_YEAST (P38931) Suppressor of RNA polymerase B SSN2 (SCA1 protein)| Length = 1420 Score = 30.4 bits (67), Expect = 3.6 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -2 Query: 561 RIHPAPKT*HDYLISPPKYTDLQL 490 R+H AP + YLI+PPK+T+L L Sbjct: 196 RMHLAPASKQGYLITPPKHTELLL 219
>POLG_CSFVB (P21530) Genome polyprotein [Contains: N-terminal protease (EC| 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1 (gp33); Envelope glycoprotein E2 (gp55); p7; Nonstructural protein 2 Length = 3898 Score = 30.4 bits (67), Expect = 3.6 Identities = 18/53 (33%), Positives = 24/53 (45%) Frame = +2 Query: 362 IDVAVLDQFLVDSTKELKSLFPSWADMTVFTTFFSTYHL*TLYNCKSVYLGGE 520 +D+A L L+ L +F WAD+ TY L LY K V +G E Sbjct: 1271 LDIAGL---LLQCVPTLLMVFTMWADILTLILILPTYELTKLYYLKEVKIGAE 1320
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 30.4 bits (67), Expect = 3.6 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 32/73 (43%) Frame = +2 Query: 302 GQSNENWSFWLEANSSE-------------------------PLRIDVAV-------LDQ 385 G SN+ W+EAN SE PLR+DVAV L + Sbjct: 1455 GSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETPLRVDVAVLKARAKLLQK 1514 Query: 386 FLVDSTKELKSLF 424 +L D KEL++L+ Sbjct: 1515 YLCDEQKELQALY 1527
>YBIP_ECOLI (P75785) UPF0141 inner membrane protein ybiP| Length = 527 Score = 30.0 bits (66), Expect = 4.7 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = +3 Query: 219 RIGPLLITHFQLLKLLAVDHHHISVDLLD 305 + GP+ IT+FQL K VD++H+ D+ D Sbjct: 499 KAGPIYITNFQLQK---VDYNHLGTDIFD 524
>GP162_HUMAN (Q16538) Probable G-protein coupled receptor 162 (Gene-rich cluster| gene A protein) Length = 588 Score = 30.0 bits (66), Expect = 4.7 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 8/86 (9%) Frame = +2 Query: 56 PAQTEEVRKHHQHFPQLVVQKTSSNNWKRRVH-LQLSLGSL-----SEIWTTSLNITGPL 217 PAQ + + H FP L RVH LQ+ L + I++T L Sbjct: 382 PAQVKLLPGRHMLFPPL-----------ERVHYLQVPLSRRLSHDETNIFSTPREPGSFL 430 Query: 218 SNWSFADN--TLPAPQTVSGGPPSYI 289 WS +D+ LPA GGPP Y+ Sbjct: 431 HKWSSSDDIRVLPAQSRALGGPPEYL 456
>HSP70_XENLA (P02827) Heat shock 70 kDa protein (HSP70)| Length = 647 Score = 30.0 bits (66), Expect = 4.7 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%) Frame = -2 Query: 468 VEKNVVKTVISAQLGKRLFSSFVLSTRNWSSTATSILSGSEEFASNQKDQFSLLCPVSRQ 289 VE VK IS + KR S +W + L+ EE+A QKD + P+ + Sbjct: 554 VEDENVKGKISDE-DKRTISEKCTQVISWLEN--NQLAEKEEYAFQQKDLEKVCQPIITK 610 Query: 288 IYDGGPPLTV----*GAGSVLSAKDQFDNGPVI 202 +Y GG P V G+ A+ ++GP I Sbjct: 611 LYQGGVPGGVPGGMPGSSCGAQARQGGNSGPTI 643
>PSB2_SYNP7 (P04997) Photosystem Q(B) protein (32 kDa thylakoid membrane| protein) (Photosystem II protein D1) Length = 360 Score = 29.6 bits (65), Expect = 6.1 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +2 Query: 62 QTEEVRKHHQHFPQLVVQKTSSNNWKRRVHLQLSLGSLSEIWTTSLNIT 208 +T + H +F +L+ Q S NN R +H L+ + IW TSL I+ Sbjct: 244 ETYNIVAAHGYFGRLIFQYASFNN-SRSLHFFLAAWPVVGIWFTSLGIS 291
>PSBA_SPIOG (P27201) Photosystem Q(B) protein (32 kDa thylakoid membrane| protein) (Photosystem II protein D1) Length = 352 Score = 29.6 bits (65), Expect = 6.1 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +2 Query: 62 QTEEVRKHHQHFPQLVVQKTSSNNWKRRVHLQLSLGSLSEIWTTSLNIT 208 +T + H +F +L+ Q S NN R +H L+ + IW TSL I+ Sbjct: 243 ETYNIVAAHGYFGRLIFQYASFNN-SRSLHFFLAAWPVIGIWFTSLGIS 290
>PSBA_PROHO (P15191) Photosystem Q(B) protein (32 kDa thylakoid membrane| protein) (Photosystem II protein D1) Length = 353 Score = 29.6 bits (65), Expect = 6.1 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +2 Query: 62 QTEEVRKHHQHFPQLVVQKTSSNNWKRRVHLQLSLGSLSEIWTTSLNIT 208 +T + H +F +L+ Q S NN R +H L+ + IW TSL I+ Sbjct: 244 ETYNIVAAHGYFGRLIFQYASFNN-SRALHFFLAAWPVVGIWFTSLGIS 291
>HSP72_SCHPO (O59855) Probable heat shock protein ssa2| Length = 646 Score = 29.6 bits (65), Expect = 6.1 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%) Frame = -2 Query: 423 KRLFSSFVLSTRNWSSTATSILSGSEEFASNQKDQFSLLCPVSRQIYD-GGPPLTV*GA- 250 K V T W + T+ + +EF + QK+ S+ P+ +IY GG P + GA Sbjct: 564 KETVDKAVKETIEWLDSNTT--AAKDEFEAKQKELESVANPIMAKIYQAGGAPGGMPGAA 621 Query: 249 -----GSVLSAKDQFDNGPVI 202 G+ A DNGP + Sbjct: 622 PGAAPGAAPGAAPGGDNGPEV 642
>YJCF_ECOLI (P32704) Hypothetical protein yjcF| Length = 430 Score = 29.3 bits (64), Expect = 8.0 Identities = 19/69 (27%), Positives = 37/69 (53%) Frame = +2 Query: 68 EEVRKHHQHFPQLVVQKTSSNNWKRRVHLQLSLGSLSEIWTTSLNITGPLSNWSFADNTL 247 E RK H++F + + ++N R+ ++ L E+ S+ + ++N + +NT+ Sbjct: 83 ETDRKIHKYF--IDIASHANNKCDDRITRRVYLNKDKEV---SIKVVYFINNVTVHNNTI 137 Query: 248 PAPQTVSGG 274 PQTV+GG Sbjct: 138 EIPQTVNGG 146
>CAD13_PONPY (Q5R5W6) Cadherin-13 precursor| Length = 713 Score = 29.3 bits (64), Expect = 8.0 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = -2 Query: 387 NWSSTATSILSGSEEFASNQKDQFSLLCPVSRQIYDGGPPLTV*GAGSVL-SAKDQFDNG 211 N + T++L F N S+ + I G PP T G G++L + +D DN Sbjct: 530 NGTVDTTAVLDRESPFVDN-----SVYTALFLAIDSGNPPAT--GTGTLLITLEDVNDNA 582 Query: 210 PVIFSEVVQISDN 172 P I+ V ++ D+ Sbjct: 583 PFIYPTVAEVCDD 595
>CAD13_HUMAN (P55290) Cadherin-13 precursor (Truncated-cadherin) (T-cadherin)| (T-cad) (Heart-cadherin) (H-cadherin) (P105) Length = 713 Score = 29.3 bits (64), Expect = 8.0 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = -2 Query: 387 NWSSTATSILSGSEEFASNQKDQFSLLCPVSRQIYDGGPPLTV*GAGSVL-SAKDQFDNG 211 N + T++L F N S+ + I G PP T G G++L + +D DN Sbjct: 530 NGTVDTTAVLDRESPFVDN-----SVYTALFLAIDSGNPPAT--GTGTLLITLEDVNDNA 582 Query: 210 PVIFSEVVQISDN 172 P I+ V ++ D+ Sbjct: 583 PFIYPTVAEVCDD 595 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,737,878 Number of Sequences: 219361 Number of extensions: 1855429 Number of successful extensions: 4627 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4489 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4624 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
