ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags20n10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472718.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 918 Score = 218 bits (110), Expect = 6e-54 Identities = 183/209 (87%) Strand = Plus / Plus Query: 2 cacacatcagngaaagtatccaatcctgctggaggtccaagcaacatcacgttcagngag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 622 cacacatcagtgaaagtatccaatcctgctggaggtccaagcaacatcacgttcagtgag 681 Query: 62 gatcctgtnacgaanacagcaaagaaaattcacaaccagaagttccaagagctgacaggc 121 || ||||| || || |||||||||| || |||||||||||||||||| |||||||| Sbjct: 682 gagcctgtagtcaagacgtcaaagaaaatccataaccagaagttccaagagttgacaggc 741 Query: 122 aataacatctttaacgaggatgctcctcctggctcanctgacaagtctctgagctcagca 181 || |||||||| || ||||| ||| | |||| ||| |||| || ||||||||||||||| Sbjct: 742 aacaacatcttcaaagaggacgctacccctgcatcagctgagaaatctctgagctcagca 801 Query: 182 aagcttaaggagatgagcggcaatgacat 210 ||||| |||||||||||||||| |||||| Sbjct: 802 aagctgaaggagatgagcggcagtgacat 830
>tpg|BK001566.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) HN1-like protein isoform 1 mRNA, complete cds Length = 1262 Score = 218 bits (110), Expect = 6e-54 Identities = 183/209 (87%) Strand = Plus / Plus Query: 2 cacacatcagngaaagtatccaatcctgctggaggtccaagcaacatcacgttcagngag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 719 cacacatcagtgaaagtatccaatcctgctggaggtccaagcaacatcacgttcagtgag 778 Query: 62 gatcctgtnacgaanacagcaaagaaaattcacaaccagaagttccaagagctgacaggc 121 || ||||| || || |||||||||| || |||||||||||||||||| |||||||| Sbjct: 779 gagcctgtagtcaagacgtcaaagaaaatccataaccagaagttccaagagttgacaggc 838 Query: 122 aataacatctttaacgaggatgctcctcctggctcanctgacaagtctctgagctcagca 181 || |||||||| || ||||| ||| | |||| ||| |||| || ||||||||||||||| Sbjct: 839 aacaacatcttcaaagaggacgctacccctgcatcagctgagaaatctctgagctcagca 898 Query: 182 aagcttaaggagatgagcggcaatgacat 210 ||||| |||||||||||||||| |||||| Sbjct: 899 aagctgaaggagatgagcggcagtgacat 927
>dbj|AK103788.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I18, full insert sequence Length = 1373 Score = 218 bits (110), Expect = 6e-54 Identities = 183/209 (87%) Strand = Plus / Plus Query: 2 cacacatcagngaaagtatccaatcctgctggaggtccaagcaacatcacgttcagngag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 719 cacacatcagtgaaagtatccaatcctgctggaggtccaagcaacatcacgttcagtgag 778 Query: 62 gatcctgtnacgaanacagcaaagaaaattcacaaccagaagttccaagagctgacaggc 121 || ||||| || || |||||||||| || |||||||||||||||||| |||||||| Sbjct: 779 gagcctgtagtcaagacgtcaaagaaaatccataaccagaagttccaagagttgacaggc 838 Query: 122 aataacatctttaacgaggatgctcctcctggctcanctgacaagtctctgagctcagca 181 || |||||||| || ||||| ||| | |||| ||| |||| || ||||||||||||||| Sbjct: 839 aacaacatcttcaaagaggacgctacccctgcatcagctgagaaatctctgagctcagca 898 Query: 182 aagcttaaggagatgagcggcaatgacat 210 ||||| |||||||||||||||| |||||| Sbjct: 899 aagctgaaggagatgagcggcagtgacat 927
>dbj|AK101129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025P19, full insert sequence Length = 1262 Score = 218 bits (110), Expect = 6e-54 Identities = 183/209 (87%) Strand = Plus / Plus Query: 2 cacacatcagngaaagtatccaatcctgctggaggtccaagcaacatcacgttcagngag 61 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 719 cacacatcagtgaaagtatccaatcctgctggaggtccaagcaacatcacgttcagtgag 778 Query: 62 gatcctgtnacgaanacagcaaagaaaattcacaaccagaagttccaagagctgacaggc 121 || ||||| || || |||||||||| || |||||||||||||||||| |||||||| Sbjct: 779 gagcctgtagtcaagacgtcaaagaaaatccataaccagaagttccaagagttgacaggc 838 Query: 122 aataacatctttaacgaggatgctcctcctggctcanctgacaagtctctgagctcagca 181 || |||||||| || ||||| ||| | |||| ||| |||| || ||||||||||||||| Sbjct: 839 aacaacatcttcaaagaggacgctacccctgcatcagctgagaaatctctgagctcagca 898 Query: 182 aagcttaaggagatgagcggcaatgacat 210 ||||| |||||||||||||||| |||||| Sbjct: 899 aagctgaaggagatgagcggcagtgacat 927
>gb|AY596573.1| Saccharum officinarum clone SCCCLR1C01D11, complete sequence Length = 1372 Score = 184 bits (93), Expect = 8e-44 Identities = 191/223 (85%), Gaps = 3/223 (1%) Strand = Plus / Plus Query: 2 cacacatcagngaaagtatccaatcctgctggaggtccaagcaacatcacgttcagngag 61 |||||||||| |||||||| |||||||| |||||||||||||||||| ||||||| || Sbjct: 760 cacacatcagttaaagtatctaatcctgccggaggtccaagcaacatctcgttcagtgaa 819 Query: 62 gatcctgtnacgaanacagcaaagaaaattcacaaccagaagttccaagagctgacaggc 121 || ||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 820 gagcctgtagtgaaaacagcaaagaaaatccacaaccagaagttccaggagctgacaggt 879 Query: 122 aataacatctttaacgaggatgctcctcctggctcanctgacaagtctctgagctcagca 181 || |||||||| || ||||| | || |||| |||| |||| |||||||||||||| || Sbjct: 880 aacaacatcttcaaggaggacg-tc--cctgcctcagctgagaagtctctgagctctgcg 936 Query: 182 aagcttaaggagatgagcggcaatgacatattctccgatggaa 224 ||||| |||||||||||||||| |||||| || ||||||||| Sbjct: 937 aagctgaaggagatgagcggcagtgacatctttgccgatggaa 979
>emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006M15, complete sequence Length = 143109 Score = 176 bits (89), Expect = 2e-41 Identities = 160/185 (86%) Strand = Plus / Minus Query: 26 cctgctggaggtccaagcaacatcacgttcagngaggatcctgtnacgaanacagcaaag 85 |||||||||||||||||||||||||||||||| ||||| ||||| || || ||||| Sbjct: 107649 cctgctggaggtccaagcaacatcacgttcagtgaggagcctgtagtcaagacgtcaaag 107590 Query: 86 aaaattcacaaccagaagttccaagagctgacaggcaataacatctttaacgaggatgct 145 ||||| || |||||||||||||||||| |||||||||| |||||||| || ||||| ||| Sbjct: 107589 aaaatccataaccagaagttccaagagttgacaggcaacaacatcttcaaagaggacgct 107530 Query: 146 cctcctggctcanctgacaagtctctgagctcagcaaagcttaaggagatgagcggcaat 205 | |||| ||| |||| || |||||||||||||||||||| |||||||||||||||| | Sbjct: 107529 acccctgcatcagctgagaaatctctgagctcagcaaagctgaaggagatgagcggcagt 107470 Query: 206 gacat 210 ||||| Sbjct: 107469 gacat 107465 Score = 42.1 bits (21), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 cacacatcagngaaagtatccaat 25 |||||||||| ||||||||||||| Sbjct: 108288 cacacatcagtgaaagtatccaat 108265
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 176 bits (89), Expect = 2e-41 Identities = 160/185 (86%) Strand = Plus / Minus Query: 26 cctgctggaggtccaagcaacatcacgttcagngaggatcctgtnacgaanacagcaaag 85 |||||||||||||||||||||||||||||||| ||||| ||||| || || ||||| Sbjct: 22770453 cctgctggaggtccaagcaacatcacgttcagtgaggagcctgtagtcaagacgtcaaag 22770394 Query: 86 aaaattcacaaccagaagttccaagagctgacaggcaataacatctttaacgaggatgct 145 ||||| || |||||||||||||||||| |||||||||| |||||||| || ||||| ||| Sbjct: 22770393 aaaatccataaccagaagttccaagagttgacaggcaacaacatcttcaaagaggacgct 22770334 Query: 146 cctcctggctcanctgacaagtctctgagctcagcaaagcttaaggagatgagcggcaat 205 | |||| ||| |||| || |||||||||||||||||||| |||||||||||||||| | Sbjct: 22770333 acccctgcatcagctgagaaatctctgagctcagcaaagctgaaggagatgagcggcagt 22770274 Query: 206 gacat 210 ||||| Sbjct: 22770273 gacat 22770269 Score = 42.1 bits (21), Expect = 0.76 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 cacacatcagngaaagtatccaat 25 |||||||||| ||||||||||||| Sbjct: 22771092 cacacatcagtgaaagtatccaat 22771069
>gb|AY107167.1| Zea mays PCO149856 mRNA sequence Length = 1497 Score = 168 bits (85), Expect = 5e-39 Identities = 189/223 (84%), Gaps = 3/223 (1%) Strand = Plus / Plus Query: 2 cacacatcagngaaagtatccaatcctgctggaggtccaagcaacatcacgttcagngag 61 |||||||||| |||||||| |||||||| |||||||||||||||||| | ||||| || Sbjct: 743 cacacatcagttaaagtatctaatcctgccggaggtccaagcaacatctctttcagcgaa 802 Query: 62 gatcctgtnacgaanacagcaaagaaaattcacaaccagaagttccaagagctgacaggc 121 || ||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 803 gagcctgtagtgaagacagcaaagaaaatccacaaccagaagttccaggagctgacaggt 862 Query: 122 aataacatctttaacgaggatgctcctcctggctcanctgacaagtctctgagctcagca 181 || |||||||| || ||||| | || |||| ||| | || |||||||||||||| || Sbjct: 863 aacaacatcttcaaggaggacg-tc--cctgcctcggccgagaagtctctgagctctgcg 919 Query: 182 aagcttaaggagatgagcggcaatgacatattctccgatggaa 224 ||||| |||||||||||||||| |||||| ||| ||||||||| Sbjct: 920 aagctgaaggagatgagcggcagtgacatcttcgccgatggaa 962
>ref|XM_466380.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1150 Score = 77.8 bits (39), Expect = 1e-11 Identities = 160/202 (79%) Strand = Plus / Plus Query: 2 cacacatcagngaaagtatccaatcctgctggaggtccaagcaacatcacgttcagngag 61 ||||| |||| ||||||||||||||||| |||||||| ||||| |||| ||| | ||| Sbjct: 693 cacacttcagttaaagtatccaatcctgccggaggtccgagcaatatcatgtttggggag 752 Query: 62 gatcctgtnacgaanacagcaaagaaaattcacaaccagaagttccaagagctgacaggc 121 || || | || || || |||||||| || |||||||||||||| ||| |||| ||| Sbjct: 753 gagccggcggtcaagaccgccaagaaaatccataaccagaagttccatgagttgacgggc 812 Query: 122 aataacatctttaacgaggatgctcctcctggctcanctgacaagtctctgagctcagca 181 || |||||||| || || || ||||| || ||||| | || ||||| |||||| | || Sbjct: 813 aacaacatcttcaaggaagaagctcccccaggctcggccgagaagtccctgagcacggcg 872 Query: 182 aagcttaaggagatgagcggca 203 ||||| ||||||||||| |||| Sbjct: 873 aagctcaaggagatgagtggca 894
>dbj|AK059246.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G05, full insert sequence Length = 1150 Score = 77.8 bits (39), Expect = 1e-11 Identities = 160/202 (79%) Strand = Plus / Plus Query: 2 cacacatcagngaaagtatccaatcctgctggaggtccaagcaacatcacgttcagngag 61 ||||| |||| ||||||||||||||||| |||||||| ||||| |||| ||| | ||| Sbjct: 693 cacacttcagttaaagtatccaatcctgccggaggtccgagcaatatcatgtttggggag 752 Query: 62 gatcctgtnacgaanacagcaaagaaaattcacaaccagaagttccaagagctgacaggc 121 || || | || || || |||||||| || |||||||||||||| ||| |||| ||| Sbjct: 753 gagccggcggtcaagaccgccaagaaaatccataaccagaagttccatgagttgacgggc 812 Query: 122 aataacatctttaacgaggatgctcctcctggctcanctgacaagtctctgagctcagca 181 || |||||||| || || || ||||| || ||||| | || ||||| |||||| | || Sbjct: 813 aacaacatcttcaaggaagaagctcccccaggctcggccgagaagtccctgagcacggcg 872 Query: 182 aagcttaaggagatgagcggca 203 ||||| ||||||||||| |||| Sbjct: 873 aagctcaaggagatgagtggca 894
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 1e-08 Identities = 99/121 (81%) Strand = Plus / Minus Query: 83 aagaaaattcacaaccagaagttccaagagctgacaggcaataacatctttaacgaggat 142 |||||||| || |||||||||||||| ||| |||| ||||| |||||||| || || || Sbjct: 22063668 aagaaaatccataaccagaagttccatgagttgacgggcaacaacatcttcaaggaagaa 22063609 Query: 143 gctcctcctggctcanctgacaagtctctgagctcagcaaagcttaaggagatgagcggc 202 ||||| || ||||| | || ||||| |||||| | || ||||| ||||||||||| ||| Sbjct: 22063608 gctcccccaggctcggccgagaagtccctgagcacggcgaagctcaaggagatgagtggc 22063549 Query: 203 a 203 | Sbjct: 22063548 a 22063548
>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0703B01 Length = 137445 Score = 67.9 bits (34), Expect = 1e-08 Identities = 99/121 (81%) Strand = Plus / Minus Query: 83 aagaaaattcacaaccagaagttccaagagctgacaggcaataacatctttaacgaggat 142 |||||||| || |||||||||||||| ||| |||| ||||| |||||||| || || || Sbjct: 37567 aagaaaatccataaccagaagttccatgagttgacgggcaacaacatcttcaaggaagaa 37508 Query: 143 gctcctcctggctcanctgacaagtctctgagctcagcaaagcttaaggagatgagcggc 202 ||||| || ||||| | || ||||| |||||| | || ||||| ||||||||||| ||| Sbjct: 37507 gctcccccaggctcggccgagaagtccctgagcacggcgaagctcaaggagatgagtggc 37448 Query: 203 a 203 | Sbjct: 37447 a 37447
>emb|AL671926.11| Mouse DNA sequence from clone RP23-356J7 on chromosome X, complete sequence Length = 153310 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 cctgctggaggtccaagcaac 46 ||||||||||||||||||||| Sbjct: 36932 cctgctggaggtccaagcaac 36912
>gb|AF246928.2| Homo sapiens chromosome 21 clone SCb-318B17 map p11-q21.1, complete sequence Length = 171914 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 agcaaagaaaattcacaaccagaa 102 |||||||||||| ||||||||||| Sbjct: 115868 agcaaagaaaatacacaaccagaa 115845
>dbj|BS000018.1| Pan troglodytes chromosome 22 clone:PTB-080A13, map 22, complete sequences Length = 173559 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 agcaaagaaaattcacaaccagaa 102 |||||||||||| ||||||||||| Sbjct: 23207 agcaaagaaaatacacaaccagaa 23184
>emb|AL163209.2|HS21C009 Homo sapiens chromosome 21 segment HS21C009 Length = 340000 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 agcaaagaaaattcacaaccagaa 102 |||||||||||| ||||||||||| Sbjct: 70176 agcaaagaaaatacacaaccagaa 70153
>emb|AJ006998.1|HS75G13 Homo sapiens chromosome 21 PAC RPCIP704G1375Q2, complete sequence Length = 123521 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 agcaaagaaaattcacaaccagaa 102 |||||||||||| ||||||||||| Sbjct: 13777 agcaaagaaaatacacaaccagaa 13754 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,783,184 Number of Sequences: 3902068 Number of extensions: 1783184 Number of successful extensions: 33246 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33195 Number of HSP's gapped (non-prelim): 44 length of query: 235 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 213 effective length of database: 17,147,199,772 effective search space: 3652353551436 effective search space used: 3652353551436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
