>VPS35_MOUSE (Q9EQH3) Vacuolar protein sorting 35 (Vesicle protein sorting 35)|
            (Maternal-embryonic 3)
          Length = 796

 Score =  121 bits (303), Expect = 1e-27
 Identities = 71/158 (44%), Positives = 99/158 (62%), Gaps = 5/158 (3%)
 Frame = +1

Query: 1    ALVPEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLTHKTTGYSAKLLKKPDQCRAVY 180
            +L  +EI+DSKAQ+ A+ LIIGT +RM  F  EN + L  +    ++KLLKKPDQ RAV 
Sbjct: 612  SLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVS 671

Query: 181  ACSHLFWT---DDQDG--IMDGERVLLCLKRALRIANAAQQMANVSKGSSGSVILFIEIL 345
             C+HLFW+    D++G  +  G+RV+ CLK+AL+IAN            S  V LFIEIL
Sbjct: 672  TCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEIL 724

Query: 346  NKYLYFFEKGIPQITNTVIQDLIELIRTEKQNDSSASD 459
            N+Y+YF+EK    +T  V+  LI+ IR +  N  S+ +
Sbjct: 725  NRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEE 762

>VPS35_HUMAN (Q96QK1) Vacuolar protein sorting 35 (Vesicle protein sorting 35)|
            (hVPS35) (Maternal-embryonic 3)
          Length = 796

 Score =  121 bits (303), Expect = 1e-27
 Identities = 71/158 (44%), Positives = 99/158 (62%), Gaps = 5/158 (3%)
 Frame = +1

Query: 1    ALVPEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLTHKTTGYSAKLLKKPDQCRAVY 180
            +L  +EI+DSKAQ+ A+ LIIGT +RM  F  EN + L  +    ++KLLKKPDQ RAV 
Sbjct: 612  SLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVS 671

Query: 181  ACSHLFWT---DDQDG--IMDGERVLLCLKRALRIANAAQQMANVSKGSSGSVILFIEIL 345
             C+HLFW+    D++G  +  G+RV+ CLK+AL+IAN            S  V LFIEIL
Sbjct: 672  TCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEIL 724

Query: 346  NKYLYFFEKGIPQITNTVIQDLIELIRTEKQNDSSASD 459
            N+Y+YF+EK    +T  V+  LI+ IR +  N  S+ +
Sbjct: 725  NRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEE 762

>VPS35_SCHPO (O74552) Vacuolar protein sorting-associated protein vps35|
          Length = 785

 Score = 99.8 bits (247), Expect = 3e-21
 Identities = 61/165 (36%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
 Frame = +1

Query: 1    ALVPEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLTHKTTGYSAKLLKKPDQCRAVY 180
            ++  E + DS+ Q   L +IIG LQ+   F V++ DTL  K T Y++KLLKKPDQC  +Y
Sbjct: 584  SIYEESVLDSELQYQQLLMIIGKLQKTRNFSVDDYDTLITKCTLYASKLLKKPDQCCGIY 643

Query: 181  ACSHLFWT----DDQDGIMDGERVLLCLKRALRIANAAQQMANVSKGSSGSVILFIEILN 348
              SHL+W     +D     D +RVL CL+++L+IA+A             S+ LFI IL 
Sbjct: 644  LASHLWWQVASGEDSRPFQDPKRVLECLQKSLKIADACMDQLT-------SLKLFINILE 696

Query: 349  KYLYFFEKGIPQITNTVIQDLIELIRTEKQN-------DSSASDP 462
            +Y Y++++    I    I  LI+L     ++       D  ASDP
Sbjct: 697  RYFYYYDQHCESIIAKHISGLIDLTEQNMRSILISSPADLIASDP 741

>VPS35_YEAST (P34110) Vacuolar protein sorting-associated protein VPS35|
          Length = 944

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 19/167 (11%)
 Frame = +1

Query: 13   EEIADSKAQITALHLIIGTLQRM-NIFGVENRDTLTHKTTGYSAKLLKKPDQCRAVYACS 189
            E ++DSK Q+ AL  I  +LQ+  +++     D+L  + T + +KLLKK DQCRAVY CS
Sbjct: 682  ESLSDSKTQLQALIYIAQSLQKTRSLYKEAYYDSLIVRCTLHGSKLLKKQDQCRAVYLCS 741

Query: 190  HLFWT------DDQDGI-----MDGERVLLCLKRALRIANAAQQMANVSKGSSGSVILFI 336
            HL+W        +++GI      DG+RVL CL+R+LR+A++          +  S  L +
Sbjct: 742  HLWWATEISNIGEEEGITDNFYRDGKRVLECLQRSLRVADSIMD-------NEQSCELMV 794

Query: 337  EILNKYLYFF---EKGIPQITNTVIQDLIELIRTE----KQNDSSAS 456
            EILN+ LY+F   ++    I+   I  LIELI+T     K  D+SAS
Sbjct: 795  EILNRCLYYFIHGDESETHISIKYINGLIELIKTNLKSLKLEDNSAS 841

>CARA_GRATL (Q6B940) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 395

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 39  NYCTSPNNW--NPSADEYIWGGK*RHPHS*DNRVLSKTSKEA*SMPGSLCMFTPFLD 203
           N C SPNNW    S   YI+  +  H    D R L+K  ++  SM G  C+ + +L+
Sbjct: 87  NICFSPNNWRQQESFINYIFNNQIPHIFGIDTRALTKHLRKTGSMNG--CISSQYLN 141

>YKEA_SCHPO (Q9UTG5) Hypothetical protein C1805.10 in chromosome I|
          Length = 527

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
 Frame = +1

Query: 94  VENRDTLTHKTTGYSAKLLKKPDQCRAVYACSHLFWTDDQDGIMDGERVLL-----CLKR 258
           +E+ D L   T      L+K+P+ CR +++C+ L   D+++ +     + L     C K 
Sbjct: 95  LESYDCLQVDTATVQKVLIKRPEGCRELHSCNVLMNNDEKNTLSLTPSIFLSVMKPCPKT 154

Query: 259 ALRIANAAQ--QMANVSKGSSGSVILFIEILNK 351
           ++ +   A   +  N+  GS     LF EI  K
Sbjct: 155 SVLVTTVAALWEQFNIFHGS----YLFDEIEKK 183

>45C1_ANCSP (P84028) Neurotoxin ANC45C1|
          Length = 47

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 252 KACFANCKCCSTNG*CIKGKQRIC 323
           K C  NC CC   G C+ G   IC
Sbjct: 8   KPCKVNCDCCGERGECVCGGPCIC 31

>NADC_METTH (O27860) Probable nicotinate-nucleotide pyrophosphorylase|
           [carboxylating] (EC 2.4.2.19) (Quinolinate
           phosphoribosyltransferase [decarboxylating]) (QAPRTase)
          Length = 279

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 178 YACSHLFWTDDQDGIMDGERVLLCLKRALRIANAAQQMANVSKGSSGSVILFIEILNK 351
           ++ S + W DD D +  GERVL     A+ I    + M N+    SG   L   +L +
Sbjct: 55  FSISIIRWKDDGDPLSGGERVLTLEGDAMDILMVERTMLNLMMKMSGIATLTRSMLQR 112

>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor|
          Length = 300

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
 Frame = +1

Query: 250 LKRALRIANAAQQMANVSKGSSGSVILFI-----------EILNKYLYFFEKGIPQITNT 396
           L  A+RI     +++  S+ +S S+I  +           E  +K+L  +++ IP I NT
Sbjct: 29  LASAIRICTKFSRLSLNSRSTSKSLIHCMSNVTADVPPVSETKSKFLKAYKRPIPSIYNT 88

Query: 397 VIQDLI 414
           V+Q+LI
Sbjct: 89  VLQELI 94

>THII_SULSO (Q980G6) Probable thiamine biosynthesis protein thiI|
          Length = 371

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
 Frame = +1

Query: 16  EIADSKAQITALHLIIGTLQRMNIFGVE--NRDTLTHKTTGYSAKLLK-KPDQCRAVYAC 186
           E+ D+ A I AL  + G      +  ++  N + + +K     A+++K K    RA    
Sbjct: 49  EVNDNNANIEALSEVFGISSFSPVIAIKSNNLEDIVNKAKEIFAEIVKGKIFAVRAKRIG 108

Query: 187 SHLFWTDDQDGIMDGERVLLCLKRALRIANAAQQMANVSKG---SSGSVILFIEILNKYL 357
           SH F +      +D ER             A + +   SKG    +  V +FIEI N+  
Sbjct: 109 SHSFTS------LDVER------------RAGEALYPYSKGVDLENPEVEIFIEIRNEMT 150

Query: 358 YFFEKGI 378
           YF+ K I
Sbjct: 151 YFYHKVI 157

>DUSA_PSEAE (Q9I048) tRNA-dihydrouridine synthase A (EC 1.-.-.-)|
          Length = 332

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 380 GIPFSKKYRYLFKISINRMTDPLLPFD 300
           G P S+++R L  + +++  DPL  FD
Sbjct: 297 GFPGSRRFRQLLSVDVHKAADPLRVFD 323


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,477,374
Number of Sequences: 219361
Number of extensions: 1131099
Number of successful extensions: 3151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3143
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)