ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags21c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK121774.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
2dbj|AK111962.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
3dbj|AK111498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
4gb|AY109216.1| Zea mays PCO122680 mRNA sequence 192 9e-46
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 100 1e-17
7emb|AL831801.4|CNS08CAE Oryza sativa chromosome 12, . BAC OSJNBb... 100 1e-17
8ref|NM_001035649.1| Arabidopsis thaliana DNA binding AT3G19184 m... 44 0.54
9dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 44 0.54
10gb|AC166289.4| Mus musculus chromosome 7, clone RP24-132A16, com... 42 2.1
11gb|AC101762.7| Mus musculus chromosome 7, clone RP24-315G8, comp... 42 2.1
12gb|AC011978.6| Homo sapiens chromosome 8, clone RP11-16E18, comp... 42 2.1
13gb|AC023442.17| Homo sapiens chromosome 11, clone RP11-375D13, c... 42 2.1
14gb|AC084878.12| Homo sapiens 12q BAC RP11-101K23 (Roswell Park C... 42 2.1
15gb|AC154296.2| Mus musculus BAC clone RP23-424C4 from chromosome... 42 2.1
16emb|BX276088.8| Zebrafish DNA sequence from clone CH211-163F17 i... 42 2.1
17emb|CR956363.11| Pig DNA sequence from clone CH242-60A21 on chro... 42 2.1
18gb|AC155259.1| Mus musculus BAC clone RP24-70C15 from 9, complet... 42 2.1
19gb|AC122326.4| Mus musculus BAC clone RP23-337J18 from chromosom... 40 8.4
20gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 40 8.4
21gb|AC154644.2| Mus musculus BAC clone RP23-278G20 from chromosom... 40 8.4
22gb|AF518566.1| Glycine max methionine synthase mRNA, complete cds 40 8.4
23gb|AC162909.2| Mus musculus BAC clone RP24-308O19 from chromosom... 40 8.4
24emb|AL356748.20| Human DNA sequence from clone RP4-686J16 on chr... 40 8.4
25emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K... 40 8.4
26emb|BX649288.14| Zebrafish DNA sequence from clone CH211-205B11 ... 40 8.4
27dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 40 8.4
28ref|XM_926505.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 8.4
29gb|AC092813.2| Homo sapiens chromosome 1 clone RP11-550H2, compl... 40 8.4
30gb|AC008380.9| Homo sapiens chromosome 5 clone CTC-215P6, comple... 40 8.4
31gb|AC008503.6| Homo sapiens chromosome 5 clone CTC-442P24, compl... 40 8.4
32gb|AC005815.1| Homo sapiens chromosome 22 clone 239d10 map 22q11... 40 8.4
33dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
34gb|AC024560.26| Homo sapiens 3 BAC RP11-496H1 (Roswell Park Canc... 40 8.4
35gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Can... 40 8.4
36gb|AC025030.14|AC025030 Homo sapiens 12 BAC RP11-46I1 (Roswell P... 40 8.4
37gb|AC069513.28| Homo sapiens 3 BAC RP11-171N2 (Roswell Park Canc... 40 8.4
38dbj|AP005325.5| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
39emb|AL954130.8| Zebrafish DNA sequence from clone CH211-214D1 in... 40 8.4
40gb|AC145249.3| Macropus eugenii clone ME_KBa-103M1, complete seq... 40 8.4
41gb|AC153834.2| Mus musculus 6 BAC RP23-367J4 (Roswell Park Cance... 40 8.4
42emb|CT025694.11| Mouse DNA sequence from clone RP24-66N5 on chro... 40 8.4
43emb|CT571242.10| Mouse DNA sequence from clone RP24-82P13 on chr... 40 8.4
44gb|AC102422.10| Mus musculus chromosome 18, clone RP24-572G3, co... 40 8.4
45dbj|D50435.1|DROPSP34K Drosophila melanogaster Sxl gene, embryon... 40 8.4
46gb|AC162939.6| Mus musculus BAC clone RP23-97G12 from chromosome... 40 8.4
47gb|AC155326.8| Mus musculus 6 BAC RP24-72P18 (Roswell Park Cance... 40 8.4 
>dbj|AK121774.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092M18, full
            insert sequence
          Length = 2001

 Score =  230 bits (116), Expect = 4e-57
 Identities = 284/340 (83%)
 Strand = Plus / Plus

                                                                        
Query: 82   aaggttgctaaagagaatagaaaggaaactgtttcagaaggtactgctcaggaggaatgt 141
            |||||||| |||||||| || ||||||  | |||||||||||| | | ||||||||||| 
Sbjct: 800  aaggttgccaaagagaaaaggaaggaatttatttcagaaggtagttcccaggaggaatgc 859

                                                                        
Query: 142  aagtattattcaacgcccggaggatgcaaatttggggaatcttgcagatacctacattgc 201
            |||||||||||||| || |||||||||||||||||  || |||| | |||||| ||  | 
Sbjct: 860  aagtattattcaacacctggaggatgcaaatttggtaaagcttgtaaatacctccaccgt 919

                                                                        
Query: 202  gaagggaaagaaaggaaaacagaagttgcaaaggttgagctgaattttctaggtcttcca 261
            || || |||||| |||||||||| | || ||||||||| ||||| ||||| |||||||||
Sbjct: 920  gatggaaaagaagggaaaacagacgctgaaaaggttgacctgaactttctcggtcttcca 979

                                                                        
Query: 262  cttcgtccaggaggaaaagagtgtccgtactatatgcgcactgggagctgcaaatttgcc 321
            ||||||||||| | ||| |||||||| ||||| ||||| |||||||||||||| |  |||
Sbjct: 980  cttcgtccaggggaaaaggagtgtccctactacatgcgtactgggagctgcaagtacgcc 1039

                                                                        
Query: 322  accaactgcagatttcaccatccggatcctactaatgtggtttcacgagatccattgttg 381
            || |||||||  ||||||||||| |||||| ||||||| | |||   |||||||  ||||
Sbjct: 1040 actaactgcaagtttcaccatcctgatccttctaatgttgcttctaaagatccacagttg 1099

                                                    
Query: 382  gagcatgagaatggtgatattccacaacaaaatgttcaag 421
            |||||||||||||| |||  |||||| ||| |||||||||
Sbjct: 1100 gagcatgagaatggggatgctccacagcaagatgttcaag 1139



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 91/112 (81%)
 Strand = Plus / Plus

                                                                        
Query: 470  tgaatgagcaccgtgttccttctttagctccagcaccctcatacagtgcgggaatgatcc 529
            |||||||||| | |||||| | | |||||||| | || || |||||||| || ||| | |
Sbjct: 1188 tgaatgagcatcatgttccgtttatagctccatctccatcgtacagtgcagggatgcttc 1247

                                                                
Query: 530  cacctcggggaatgtatccatcttcagaatggagtgggtaccatcaggttcc 581
            | ||||  |||||||||||| || | ||||||| |||||| |||||||||||
Sbjct: 1248 ctcctcaaggaatgtatccacctcctgaatggaatgggtatcatcaggttcc 1299
to top
>dbj|AK111962.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B06, full
            insert sequence
          Length = 1896

 Score =  230 bits (116), Expect = 4e-57
 Identities = 284/340 (83%)
 Strand = Plus / Plus

                                                                        
Query: 82   aaggttgctaaagagaatagaaaggaaactgtttcagaaggtactgctcaggaggaatgt 141
            |||||||| |||||||| || ||||||  | |||||||||||| | | ||||||||||| 
Sbjct: 727  aaggttgccaaagagaaaaggaaggaatttatttcagaaggtagttcccaggaggaatgc 786

                                                                        
Query: 142  aagtattattcaacgcccggaggatgcaaatttggggaatcttgcagatacctacattgc 201
            |||||||||||||| || |||||||||||||||||  || |||| | |||||| ||  | 
Sbjct: 787  aagtattattcaacacctggaggatgcaaatttggtaaagcttgtaaatacctccaccgt 846

                                                                        
Query: 202  gaagggaaagaaaggaaaacagaagttgcaaaggttgagctgaattttctaggtcttcca 261
            || || |||||| |||||||||| | || ||||||||| ||||| ||||| |||||||||
Sbjct: 847  gatggaaaagaagggaaaacagacgctgaaaaggttgacctgaactttctcggtcttcca 906

                                                                        
Query: 262  cttcgtccaggaggaaaagagtgtccgtactatatgcgcactgggagctgcaaatttgcc 321
            ||||||||||| | ||| |||||||| ||||| ||||| |||||||||||||| |  |||
Sbjct: 907  cttcgtccaggggaaaaggagtgtccctactacatgcgtactgggagctgcaagtacgcc 966

                                                                        
Query: 322  accaactgcagatttcaccatccggatcctactaatgtggtttcacgagatccattgttg 381
            || |||||||  ||||||||||| |||||| ||||||| | |||   |||||||  ||||
Sbjct: 967  actaactgcaagtttcaccatcctgatccttctaatgttgcttctaaagatccacagttg 1026

                                                    
Query: 382  gagcatgagaatggtgatattccacaacaaaatgttcaag 421
            |||||||||||||| |||  |||||| ||| |||||||||
Sbjct: 1027 gagcatgagaatggggatgctccacagcaagatgttcaag 1066



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 91/112 (81%)
 Strand = Plus / Plus

                                                                        
Query: 470  tgaatgagcaccgtgttccttctttagctccagcaccctcatacagtgcgggaatgatcc 529
            |||||||||| | |||||| | | |||||||| | || || |||||||| || ||| | |
Sbjct: 1114 tgaatgagcatcatgttccgtttatagctccatctccatcgtacagtgcagggatgcttc 1173

                                                                
Query: 530  cacctcggggaatgtatccatcttcagaatggagtgggtaccatcaggttcc 581
            | ||||  |||||||||||| || | ||||||| |||||| |||||||||||
Sbjct: 1174 ctcctcaaggaatgtatccacctcctgaatggaatgggtatcatcaggttcc 1225
to top
>dbj|AK111498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H23, full
            insert sequence
          Length = 1919

 Score =  230 bits (116), Expect = 4e-57
 Identities = 284/340 (83%)
 Strand = Plus / Plus

                                                                        
Query: 82   aaggttgctaaagagaatagaaaggaaactgtttcagaaggtactgctcaggaggaatgt 141
            |||||||| |||||||| || ||||||  | |||||||||||| | | ||||||||||| 
Sbjct: 743  aaggttgccaaagagaaaaggaaggaatttatttcagaaggtagttcccaggaggaatgc 802

                                                                        
Query: 142  aagtattattcaacgcccggaggatgcaaatttggggaatcttgcagatacctacattgc 201
            |||||||||||||| || |||||||||||||||||  || |||| | |||||| ||  | 
Sbjct: 803  aagtattattcaacacctggaggatgcaaatttggtaaagcttgtaaatacctccaccgt 862

                                                                        
Query: 202  gaagggaaagaaaggaaaacagaagttgcaaaggttgagctgaattttctaggtcttcca 261
            || || |||||| |||||||||| | || ||||||||| ||||| ||||| |||||||||
Sbjct: 863  gatggaaaagaagggaaaacagacgctgaaaaggttgacctgaactttctcggtcttcca 922

                                                                        
Query: 262  cttcgtccaggaggaaaagagtgtccgtactatatgcgcactgggagctgcaaatttgcc 321
            ||||||||||| | ||| |||||||| ||||| ||||| |||||||||||||| |  |||
Sbjct: 923  cttcgtccaggggaaaaggagtgtccctactacatgcgtactgggagctgcaagtacgcc 982

                                                                        
Query: 322  accaactgcagatttcaccatccggatcctactaatgtggtttcacgagatccattgttg 381
            || |||||||  ||||||||||| |||||| ||||||| | |||   |||||||  ||||
Sbjct: 983  actaactgcaagtttcaccatcctgatccttctaatgttgcttctaaagatccacagttg 1042

                                                    
Query: 382  gagcatgagaatggtgatattccacaacaaaatgttcaag 421
            |||||||||||||| |||  |||||| ||| |||||||||
Sbjct: 1043 gagcatgagaatggggatgctccacagcaagatgttcaag 1082



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 91/112 (81%)
 Strand = Plus / Plus

                                                                        
Query: 470  tgaatgagcaccgtgttccttctttagctccagcaccctcatacagtgcgggaatgatcc 529
            |||||||||| | |||||| | | |||||||| | || || |||||||| || ||| | |
Sbjct: 1131 tgaatgagcatcatgttccgtttatagctccatctccatcgtacagtgcagggatgcttc 1190

                                                                
Query: 530  cacctcggggaatgtatccatcttcagaatggagtgggtaccatcaggttcc 581
            | ||||  |||||||||||| || | ||||||| |||||| |||||||||||
Sbjct: 1191 ctcctcaaggaatgtatccacctcctgaatggaatgggtatcatcaggttcc 1242
to top
>gb|AY109216.1| Zea mays PCO122680 mRNA sequence
          Length = 1155

 Score =  192 bits (97), Expect = 9e-46
 Identities = 283/345 (82%)
 Strand = Plus / Plus

                                                                       
Query: 89  ctaaagagaatagaaaggaaactgtttcagaaggtactgctcaggaggaatgtaagtatt 148
           ||||||| || |||||||||||  || ||||||| |   ||||||||||||| |||||||
Sbjct: 24  ctaaagataaaagaaaggaaacctttgcagaaggcaacactcaggaggaatgcaagtatt 83

                                                                       
Query: 149 attcaacgcccggaggatgcaaatttggggaatcttgcagatacctacattgcgaaggga 208
           ||||||| || |||||||||||||| ||  || |||||| |||||| ||  | || || |
Sbjct: 84  attcaacacctggaggatgcaaattcggtaaaacttgcaaatacctccaccgtgagggaa 143

                                                                       
Query: 209 aagaaaggaaaacagaagttgcaaaggttgagctgaattttctaggtcttccacttcgtc 268
           | | | |||||||||| |||| ||| | |||||| || ||||||||||||||||| || |
Sbjct: 144 atggagggaaaacagaggttgaaaaagctgagctaaactttctaggtcttccactgcgac 203

                                                                       
Query: 269 caggaggaaaagagtgtccgtactatatgcgcactgggagctgcaaatttgccaccaact 328
           |||| | ||| ||||| || |||||||||||||||||||||||||||||||| || ||||
Sbjct: 204 caggtgaaaaggagtgcccatactatatgcgcactgggagctgcaaatttgcgactaact 263

                                                                       
Query: 329 gcagatttcaccatccggatcctactaatgtggtttcacgagatccattgttggagcatg 388
           |||  |||||||| || |||||||||||||    ||||  ||| |||  |||||| ||||
Sbjct: 264 gcaagtttcaccacccagatcctactaatgcatcttcaaaagaaccagggttggaacatg 323

                                                        
Query: 389 agaatggtgatattccacaacaaaatgttcaagcatcctctcagc 433
           ||||||| ||| | ||||  |||||||| |||| |||||||||||
Sbjct: 324 agaatggcgatgtaccactgcaaaatgtccaaggatcctctcagc 368



 Score =  101 bits (51), Expect = 3e-18
 Identities = 126/151 (83%)
 Strand = Plus / Plus

                                                                       
Query: 455 ctgaccaaagggcattgaatgagcaccgtgttccttctttagctccagcaccctcataca 514
           ||||||| || ||||||||||| || | |||||||| | | ||||||||||| |||||||
Sbjct: 387 ctgaccagagagcattgaatgaacagcatgttccttttcttgctccagcaccgtcataca 446

                                                                       
Query: 515 gtgcgggaatgatcccacctcggggaatgtatccatcttcagaatggagtgggtaccatc 574
           |||  || ||| | |||||||  ||||||||||||||||| || ||||||||||| ||||
Sbjct: 447 gtggagggatggttccacctcaaggaatgtatccatcttctgattggagtgggtatcatc 506

                                          
Query: 575 aggttccattaggtccatattacactcccgg 605
           |||| || ||   |||||||||| |||||||
Sbjct: 507 aggtacctttgaatccatattaccctcccgg 537
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 119/142 (83%)
 Strand = Plus / Minus

                                                                            
Query: 280      gagtgtccgtactatatgcgcactgggagctgcaaatttgccaccaactgcagatttcac 339
                |||||||| ||||| ||||| |||||||||||||| |  ||||| |||||||  ||||||
Sbjct: 10437116 gagtgtccctactacatgcgtactgggagctgcaagtacgccactaactgcaagtttcac 10437057

                                                                            
Query: 340      catccggatcctactaatgtggtttcacgagatccattgttggagcatgagaatggtgat 399
                ||||| |||||| ||||||| | |||   |||||||  |||||||||||||||||| |||
Sbjct: 10437056 catcctgatccttctaatgttgcttctaaagatccacagttggagcatgagaatggggat 10436997

                                      
Query: 400      attccacaacaaaatgttcaag 421
                  |||||| ||| |||||||||
Sbjct: 10436996 gctccacagcaagatgttcaag 10436975



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 109/129 (84%)
 Strand = Plus / Minus

                                                                            
Query: 143      agtattattcaacgcccggaggatgcaaatttggggaatcttgcagatacctacattgcg 202
                ||||||||||||| || |||||||||||||||||  || |||| | |||||| ||  | |
Sbjct: 10438059 agtattattcaacacctggaggatgcaaatttggtaaagcttgtaaatacctccaccgtg 10438000

                                                                            
Query: 203      aagggaaagaaaggaaaacagaagttgcaaaggttgagctgaattttctaggtcttccac 262
                | || |||||| |||||||||| | || ||||||||| ||||| ||||| ||||||||||
Sbjct: 10437999 atggaaaagaagggaaaacagacgctgaaaaggttgacctgaactttctcggtcttccac 10437940

                         
Query: 263      ttcgtccag 271
                |||||||||
Sbjct: 10437939 ttcgtccag 10437931



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 88/109 (80%)
 Strand = Plus / Minus

                                                                            
Query: 470      tgaatgagcaccgtgttccttctttagctccagcaccctcatacagtgcgggaatgatcc 529
                |||||||||| | |||||| | | |||||||| | || || |||||||| || ||| | |
Sbjct: 10436926 tgaatgagcatcatgttccgtttatagctccatctccatcgtacagtgcagggatgcttc 10436867

                                                                 
Query: 530      cacctcggggaatgtatccatcttcagaatggagtgggtaccatcaggt 578
                | ||||  |||||||||||| || | ||||||| |||||| ||||||||
Sbjct: 10436866 ctcctcaaggaatgtatccacctcctgaatggaatgggtatcatcaggt 10436818



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                           
Query: 82       aaggttgctaaagagaatagaaaggaaactgtttcagaaggtactgctcaggaggaatg 140
                |||||||| |||||||| || ||||||  | |||||||||||| | | |||||||||||
Sbjct: 10439887 aaggttgccaaagagaaaaggaaggaatttatttcagaaggtagttcccaggaggaatg 10439829
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 119/142 (83%)
 Strand = Plus / Minus

                                                                            
Query: 280      gagtgtccgtactatatgcgcactgggagctgcaaatttgccaccaactgcagatttcac 339
                |||||||| ||||| ||||| |||||||||||||| |  ||||| |||||||  ||||||
Sbjct: 10436998 gagtgtccctactacatgcgtactgggagctgcaagtacgccactaactgcaagtttcac 10436939

                                                                            
Query: 340      catccggatcctactaatgtggtttcacgagatccattgttggagcatgagaatggtgat 399
                ||||| |||||| ||||||| | |||   |||||||  |||||||||||||||||| |||
Sbjct: 10436938 catcctgatccttctaatgttgcttctaaagatccacagttggagcatgagaatggggat 10436879

                                      
Query: 400      attccacaacaaaatgttcaag 421
                  |||||| ||| |||||||||
Sbjct: 10436878 gctccacagcaagatgttcaag 10436857



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 109/129 (84%)
 Strand = Plus / Minus

                                                                            
Query: 143      agtattattcaacgcccggaggatgcaaatttggggaatcttgcagatacctacattgcg 202
                ||||||||||||| || |||||||||||||||||  || |||| | |||||| ||  | |
Sbjct: 10437941 agtattattcaacacctggaggatgcaaatttggtaaagcttgtaaatacctccaccgtg 10437882

                                                                            
Query: 203      aagggaaagaaaggaaaacagaagttgcaaaggttgagctgaattttctaggtcttccac 262
                | || |||||| |||||||||| | || ||||||||| ||||| ||||| ||||||||||
Sbjct: 10437881 atggaaaagaagggaaaacagacgctgaaaaggttgacctgaactttctcggtcttccac 10437822

                         
Query: 263      ttcgtccag 271
                |||||||||
Sbjct: 10437821 ttcgtccag 10437813



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 88/109 (80%)
 Strand = Plus / Minus

                                                                            
Query: 470      tgaatgagcaccgtgttccttctttagctccagcaccctcatacagtgcgggaatgatcc 529
                |||||||||| | |||||| | | |||||||| | || || |||||||| || ||| | |
Sbjct: 10436808 tgaatgagcatcatgttccgtttatagctccatctccatcgtacagtgcagggatgcttc 10436749

                                                                 
Query: 530      cacctcggggaatgtatccatcttcagaatggagtgggtaccatcaggt 578
                | ||||  |||||||||||| || | ||||||| |||||| ||||||||
Sbjct: 10436748 ctcctcaaggaatgtatccacctcctgaatggaatgggtatcatcaggt 10436700



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                           
Query: 82       aaggttgctaaagagaatagaaaggaaactgtttcagaaggtactgctcaggaggaatg 140
                |||||||| |||||||| || ||||||  | |||||||||||| | | |||||||||||
Sbjct: 10439769 aaggttgccaaagagaaaaggaaggaatttatttcagaaggtagttcccaggaggaatg 10439711
to top
>emb|AL831801.4|CNS08CAE Oryza sativa chromosome 12, . BAC OSJNBb0094I20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 130454

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 119/142 (83%)
 Strand = Plus / Minus

                                                                         
Query: 280   gagtgtccgtactatatgcgcactgggagctgcaaatttgccaccaactgcagatttcac 339
             |||||||| ||||| ||||| |||||||||||||| |  ||||| |||||||  ||||||
Sbjct: 89617 gagtgtccctactacatgcgtactgggagctgcaagtacgccactaactgcaagtttcac 89558

                                                                         
Query: 340   catccggatcctactaatgtggtttcacgagatccattgttggagcatgagaatggtgat 399
             ||||| |||||| ||||||| | |||   |||||||  |||||||||||||||||| |||
Sbjct: 89557 catcctgatccttctaatgttgcttctaaagatccacagttggagcatgagaatggggat 89498

                                   
Query: 400   attccacaacaaaatgttcaag 421
               |||||| ||| |||||||||
Sbjct: 89497 gctccacagcaagatgttcaag 89476



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 109/129 (84%)
 Strand = Plus / Minus

                                                                         
Query: 143   agtattattcaacgcccggaggatgcaaatttggggaatcttgcagatacctacattgcg 202
             ||||||||||||| || |||||||||||||||||  || |||| | |||||| ||  | |
Sbjct: 90560 agtattattcaacacctggaggatgcaaatttggtaaagcttgtaaatacctccaccgtg 90501

                                                                         
Query: 203   aagggaaagaaaggaaaacagaagttgcaaaggttgagctgaattttctaggtcttccac 262
             | || |||||| |||||||||| | || ||||||||| ||||| ||||| ||||||||||
Sbjct: 90500 atggaaaagaagggaaaacagacgctgaaaaggttgacctgaactttctcggtcttccac 90441

                      
Query: 263   ttcgtccag 271
             |||||||||
Sbjct: 90440 ttcgtccag 90432



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 88/109 (80%)
 Strand = Plus / Minus

                                                                         
Query: 470   tgaatgagcaccgtgttccttctttagctccagcaccctcatacagtgcgggaatgatcc 529
             |||||||||| | |||||| | | |||||||| | || || |||||||| || ||| | |
Sbjct: 89427 tgaatgagcatcatgttccgtttatagctccatctccatcgtacagtgcagggatgcttc 89368

                                                              
Query: 530   cacctcggggaatgtatccatcttcagaatggagtgggtaccatcaggt 578
             | ||||  |||||||||||| || | ||||||| |||||| ||||||||
Sbjct: 89367 ctcctcaaggaatgtatccacctcctgaatggaatgggtatcatcaggt 89319



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 82    aaggttgctaaagagaatagaaaggaaactgtttcagaaggtactgctcaggaggaatg 140
             |||||||| |||||||| || ||||||  | |||||||||||| | | |||||||||||
Sbjct: 92388 aaggttgccaaagagaaaaggaaggaatttatttcagaaggtagttcccaggaggaatg 92330
to top
>ref|NM_001035649.1| Arabidopsis thaliana DNA binding AT3G19184 mRNA, complete cds
          Length = 855

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 103 aaggaaactgtttcagaaggta 124
           ||||||||||||||||||||||
Sbjct: 766 aaggaaactgtttcagaaggta 787
to top
>dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVI11
          Length = 81875

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 103   aaggaaactgtttcagaaggta 124
             ||||||||||||||||||||||
Sbjct: 33977 aaggaaactgtttcagaaggta 33998
to top
>gb|AC166289.4| Mus musculus chromosome 7, clone RP24-132A16, complete sequence
          Length = 172931

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 206   ggaaagaaaggaaaacagaag 226
             |||||||||||||||||||||
Sbjct: 75939 ggaaagaaaggaaaacagaag 75919
to top
>gb|AC101762.7| Mus musculus chromosome 7, clone RP24-315G8, complete sequence
          Length = 185445

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 206   ggaaagaaaggaaaacagaag 226
             |||||||||||||||||||||
Sbjct: 81159 ggaaagaaaggaaaacagaag 81139
to top
>gb|AC011978.6| Homo sapiens chromosome 8, clone RP11-16E18, complete sequence
          Length = 159715

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 90     taaagagaatagaaaggaaac 110
              |||||||||||||||||||||
Sbjct: 130570 taaagagaatagaaaggaaac 130550
to top
>gb|AC023442.17| Homo sapiens chromosome 11, clone RP11-375D13, complete sequence
          Length = 177644

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 203   aagggaaagaaaggaaaacag 223
             |||||||||||||||||||||
Sbjct: 56123 aagggaaagaaaggaaaacag 56103
to top
>gb|AC084878.12| Homo sapiens 12q BAC RP11-101K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 135060

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    agagaatagaaaggaaactgt 113
             |||||||||||||||||||||
Sbjct: 68326 agagaatagaaaggaaactgt 68346
to top
>gb|AC154296.2| Mus musculus BAC clone RP23-424C4 from chromosome 9, complete sequence
          Length = 194303

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 202    gaagggaaagaaaggaaaaca 222
              |||||||||||||||||||||
Sbjct: 180206 gaagggaaagaaaggaaaaca 180226
to top
>emb|BX276088.8| Zebrafish DNA sequence from clone CH211-163F17 in linkage group 14,
             complete sequence
          Length = 91406

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 396   tgatattccacaacaaaatgttcaa 420
             ||||||||||||| |||||||||||
Sbjct: 35825 tgatattccacaaaaaaatgttcaa 35801
to top
>emb|CR956363.11| Pig DNA sequence from clone CH242-60A21 on chromosome 17, complete
              sequence
          Length = 208621

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 205    gggaaagaaaggaaaacagaagttgcaaa 233
              |||||||| |||||| |||||||||||||
Sbjct: 162713 gggaaagacaggaaagcagaagttgcaaa 162685
to top
>gb|AC155259.1| Mus musculus BAC clone RP24-70C15 from 9, complete sequence
          Length = 222729

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 202    gaagggaaagaaaggaaaaca 222
              |||||||||||||||||||||
Sbjct: 197197 gaagggaaagaaaggaaaaca 197177
to top
>gb|AC122326.4| Mus musculus BAC clone RP23-337J18 from chromosome 10, complete sequence
          Length = 236165

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    agaaaggaaaacagaagttg 229
              ||||||||||||||||||||
Sbjct: 229430 agaaaggaaaacagaagttg 229449
to top
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 198     ttgcgaagggaaagaaaggaaaac 221
               |||||| |||||||||||||||||
Sbjct: 1352385 ttgcgatgggaaagaaaggaaaac 1352408
to top
>gb|AC154644.2| Mus musculus BAC clone RP23-278G20 from chromosome 14, complete sequence
          Length = 175685

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    agaaaggaaaacagaagttg 229
              ||||||||||||||||||||
Sbjct: 114423 agaaaggaaaacagaagttg 114404
to top
>gb|AF518566.1| Glycine max methionine synthase mRNA, complete cds
          Length = 2695

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 246  ttttctaggtcttccacttcgtcc 269
            ||||| ||||||||||||||||||
Sbjct: 1861 ttttcaaggtcttccacttcgtcc 1838
to top
>gb|AC162909.2| Mus musculus BAC clone RP24-308O19 from chromosome 17, complete
             sequence
          Length = 145512

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   gaaagaaaggaaaacagaag 226
             ||||||||||||||||||||
Sbjct: 14908 gaaagaaaggaaaacagaag 14889
to top
>emb|AL356748.20| Human DNA sequence from clone RP4-686J16 on chromosome 1 Contains the
             5' end of the IGSF3 gene for immunoglobulin superfamily
             member 3, a novel gene, a glyceraldehyde-3-phosphate
             dehydrogenase (GAPD) pseudogene and a CpG island, complete
             sequence
          Length = 97559

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 202   gaagggaaagaaaggaaaacagaa 225
             ||||||||||||||||||| ||||
Sbjct: 56588 gaagggaaagaaaggaaaaaagaa 56611
to top
>emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K2 on chromosome 6q25.1-25.3
             Contains part of the gene for BRG1-binding protein
             ELD/OSA1 (p250R KIAA1235) (FLJ00253 FLJ22292), a novel
             gene and two CpG islands, complete sequence
          Length = 187507

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 212   aaaggaaaacagaagttgcaaagg 235
             |||| |||||||||||||||||||
Sbjct: 59495 aaagcaaaacagaagttgcaaagg 59518
to top
>emb|BX649288.14| Zebrafish DNA sequence from clone CH211-205B11 in linkage group 3,
             complete sequence
          Length = 145373

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 570   ccatcaggttccattaggtc 589
             ||||||||||||||||||||
Sbjct: 97853 ccatcaggttccattaggtc 97872
to top
>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111
          Length = 2356219

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    taaagagaatagaaaggaaa 109
             ||||||||||||||||||||
Sbjct: 21866 taaagagaatagaaaggaaa 21885
to top
>ref|XM_926505.1| PREDICTED: Homo sapiens hypothetical protein LOC643131 (LOC643131),
           mRNA
          Length = 1391

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 297 gcgcactgggagctgcaaat 316
           ||||||||||||||||||||
Sbjct: 170 gcgcactgggagctgcaaat 189
to top
>gb|AC092813.2| Homo sapiens chromosome 1 clone RP11-550H2, complete sequence
          Length = 182529

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   gtgatattccacaacaaaat 414
             ||||||||||||||||||||
Sbjct: 28066 gtgatattccacaacaaaat 28047
to top
>gb|AC008380.9| Homo sapiens chromosome 5 clone CTC-215P6, complete sequence
          Length = 153903

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 203    aagggaaagaaaggaaaacagaag 226
              |||||||| |||||||||||||||
Sbjct: 135231 aagggaaataaaggaaaacagaag 135208
to top
>gb|AC008503.6| Homo sapiens chromosome 5 clone CTC-442P24, complete sequence
          Length = 153906

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 203   aagggaaagaaaggaaaacagaag 226
             |||||||| |||||||||||||||
Sbjct: 18673 aagggaaataaaggaaaacagaag 18696
to top
>gb|AC005815.1| Homo sapiens chromosome 22 clone 239d10 map 22q11, complete sequence
          Length = 183085

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 202    gaagggaaagaaaggaaaacagaa 225
              ||||||||||||||||||| ||||
Sbjct: 147312 gaagggaaagaaaggaaaaaagaa 147335
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 50       tctatttgaagaagtttaac 69
                ||||||||||||||||||||
Sbjct: 12846774 tctatttgaagaagtttaac 12846755



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 50       tctatttgaagaagtttaac 69
                ||||||||||||||||||||
Sbjct: 12833210 tctatttgaagaagtttaac 12833191
to top
>gb|AC024560.26| Homo sapiens 3 BAC RP11-496H1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164595

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    gcgcactgggagctgcaaat 316
              ||||||||||||||||||||
Sbjct: 140382 gcgcactgggagctgcaaat 140401
to top
>gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157198

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   gcgcactgggagctgcaaat 316
             ||||||||||||||||||||
Sbjct: 47676 gcgcactgggagctgcaaat 47657
to top
>gb|AC025030.14|AC025030 Homo sapiens 12 BAC RP11-46I1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170921

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 203   aagggaaagaaaggaaaacagaag 226
             |||||||| |||||||||||||||
Sbjct: 84024 aagggaaataaaggaaaacagaag 84047
to top
>gb|AC069513.28| Homo sapiens 3 BAC RP11-171N2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 174097

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    gcgcactgggagctgcaaat 316
              ||||||||||||||||||||
Sbjct: 171382 gcgcactgggagctgcaaat 171363
to top
>dbj|AP005325.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0710F09
          Length = 198867

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     tctatttgaagaagtttaac 69
              ||||||||||||||||||||
Sbjct: 104898 tctatttgaagaagtttaac 104879



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    tctatttgaagaagtttaac 69
             ||||||||||||||||||||
Sbjct: 91334 tctatttgaagaagtttaac 91315
to top
>emb|AL954130.8| Zebrafish DNA sequence from clone CH211-214D1 in linkage group 16,
            complete sequence
          Length = 235236

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 407  aacaaaatgttcaagcatcc 426
            ||||||||||||||||||||
Sbjct: 2705 aacaaaatgttcaagcatcc 2686
to top
>gb|AC145249.3| Macropus eugenii clone ME_KBa-103M1, complete sequence
          Length = 151329

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 198   ttgcgaagggaaagaaaggaaaac 221
             |||||| |||||||||||||||||
Sbjct: 76695 ttgcgatgggaaagaaaggaaaac 76718
to top
>gb|AC153834.2| Mus musculus 6 BAC RP23-367J4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 152354

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 209   aagaaaggaaaacagaagttgcaa 232
             ||||||||||||||| ||||||||
Sbjct: 48100 aagaaaggaaaacagtagttgcaa 48123
to top
>emb|CT025694.11| Mouse DNA sequence from clone RP24-66N5 on chromosome 14, complete
              sequence
          Length = 203022

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    agaaaggaaaacagaagttg 229
              ||||||||||||||||||||
Sbjct: 130216 agaaaggaaaacagaagttg 130197
to top
>emb|CT571242.10| Mouse DNA sequence from clone RP24-82P13 on chromosome 17, complete
             sequence
          Length = 236078

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   gaaagaaaggaaaacagaag 226
             ||||||||||||||||||||
Sbjct: 40340 gaaagaaaggaaaacagaag 40359
to top
>gb|AC102422.10| Mus musculus chromosome 18, clone RP24-572G3, complete sequence
          Length = 173218

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   aaagaaaggaaaacagaagt 227
             ||||||||||||||||||||
Sbjct: 66808 aaagaaaggaaaacagaagt 66789
to top
>dbj|D50435.1|DROPSP34K Drosophila melanogaster Sxl gene, embryonic exon
          Length = 3454

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 207  gaaagaaaggaaaacagaag 226
            ||||||||||||||||||||
Sbjct: 1726 gaaagaaaggaaaacagaag 1707
to top
>gb|AC162939.6| Mus musculus BAC clone RP23-97G12 from chromosome 10, complete sequence
          Length = 247228

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    agaaaggaaaacagaagttg 229
              ||||||||||||||||||||
Sbjct: 147658 agaaaggaaaacagaagttg 147639
to top
>gb|AC155326.8| Mus musculus 6 BAC RP24-72P18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 184159

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 209    aagaaaggaaaacagaagttgcaa 232
              ||||||||||||||| ||||||||
Sbjct: 178803 aagaaaggaaaacagtagttgcaa 178826


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,035,045
Number of Sequences: 3902068
Number of extensions: 6035045
Number of successful extensions: 126511
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126289
Number of HSP's gapped (non-prelim): 216
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top