ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags21b22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK068068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 505 e-140
2gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome... 174 2e-40
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 174 2e-40
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
5gb|BT018395.1| Zea mays clone EL01N0320F03.d mRNA sequence 149 1e-32
6ref|XM_482407.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.008
7gb|AY644647.1| Oryza sativa (indica cultivar-group) putative ATP... 50 0.008
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
9dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
10dbj|AK070406.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
11gb|AC002386.2| Homo sapiens BAC clone CTA-343H22 from 7, complet... 46 0.13
12dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 46 0.13
13gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chr... 44 0.50
14ref|XM_389916.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 44 0.50
15ref|XM_567279.1| Cryptococcus neoformans var. neoformans JEC21 R... 44 0.50
16gb|AC109145.11| Mus musculus chromosome 1, clone RP23-109O14, co... 42 2.0
17gb|AC139206.5| Mus musculus chromosome 1, clone RP23-82P18, comp... 42 2.0
18gb|AC099055.2| Homo sapiens chromosome 3 clone RP11-527L9, compl... 42 2.0
19gb|AC105924.4| Homo sapiens BAC clone RP11-706F1 from 4, complet... 42 2.0
20gb|AF112114.1|AF112114 Mus musculus CD21 gene intron 1, complete... 42 2.0
21emb|AL928741.2| Mouse DNA sequence from clone RP23-264P3 on chro... 42 2.0
22ref|XM_652645.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 7.8
23gb|AY588245.1| Homo sapiens MCM4 minichromosome maintenance defi... 40 7.8
24ref|XM_384308.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 7.8
25emb|AL928709.36| Zebrafish DNA sequence from clone CH211-127L5 i... 40 7.8
26gb|AC122729.23| Medicago truncatula clone mth1-62g18, complete s... 40 7.8
27emb|Z84488.1|HS93H18 Human DNA sequence from clone RP1-93H18 on ... 40 7.8
28emb|AL365508.19| Human DNA sequence from clone RP11-301B7 on chr... 40 7.8
29emb|AL672010.8| Mouse DNA sequence from clone RP23-223C15 on chr... 40 7.8
30gb|AC021236.10| Homo sapiens chromosome 8, clone RP11-113H14, co... 40 7.8
31gb|U63630.4|HSU63630 Homo sapiens MCM4 (MCM4) and DNA-PKcs (PRKD... 40 7.8
32gb|AC110296.3| Homo sapiens BAC clone RP11-120A1 from 4, complet... 40 7.8
33gb|AC068492.2| Homo sapiens BAC clone RP11-809C23 from 2, comple... 40 7.8
34ref|XM_344187.2| PREDICTED: Rattus norvegicus similar to probabl... 40 7.8
35dbj|AK111212.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
36gb|AC140938.1| Gallus gallus BAC clone TAM32-30F4 from chromosom... 40 7.8
37dbj|AP006390.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 7.8
38dbj|AP004483.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 7.8 
>dbj|AK068068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129E17, full
           insert sequence
          Length = 2230

 Score =  505 bits (255), Expect = e-140
 Identities = 432/491 (87%)
 Strand = Plus / Plus

                                                                       
Query: 83  tttgatgagcttgggctggacgagcagctcaagagggccctgaggaagaagggcttgacc 142
           ||||| ||||||||  |||||||||| || ||||||||  |||||||||||||||||  |
Sbjct: 321 tttgacgagcttggcttggacgagcaactgaagagggctttgaggaagaagggcttggac 380

                                                                       
Query: 143 aagaccaccccgatccagcgggaggccatcccgctcatcctggaagggaaggatgttgtc 202
           ||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 aaggccaccccgatccagagagaggccatcccgctcatcctggaagggaaggatgtggtc 440

                                                                       
Query: 203 gctaaggccaagactggttccggaaagacctttgcctaccttctcccgctgctgcaagag 262
           ||||||||||||||||| ||||||||||||||||| |||||||||||  ||||||| |||
Sbjct: 441 gctaaggccaagactggctccggaaagacctttgcttaccttctccctatgctgcatgag 500

                                                                       
Query: 263 ctgttgaagttgtgcaaagaagggcgtattcggaaatctgcatcaaatgccttaatactg 322
           || ||||||||||    |||||||||||| || ||||||||  ||||||  || || || 
Sbjct: 501 ctattgaagttgtctgcagaagggcgtatccgaaaatctgctccaaatgttttcatcctt 560

                                                                       
Query: 323 gtgccaactcgcgagttatgccagcaggtgtataatgaggcatcatctctccttgagttg 382
           |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| || 
Sbjct: 561 gtgccaactcgcgagttatgccagcaggttcataatgaggcatcatctctccttgaattc 620

                                                                       
Query: 383 tgtacatccaagttgaagattgttcaagtgaccgcgagcatgtcagataaggatattaaa 442
           ||||||||||| |||||| |||| |||||||  |||||||||||||| || |||||||||
Sbjct: 621 tgtacatccaaattgaaggttgtgcaagtgaatgcgagcatgtcagacaaagatattaaa 680

                                                                       
Query: 443 cttgcattgtctgggccccctaatattctggtgacaaccccagcttgtgttgcagcatgc 502
            ||||||||||||| ||||||||||| || || ||||| || |||||||||||| |||||
Sbjct: 681 gttgcattgtctggcccccctaatatacttgttacaactcctgcttgtgttgcatcatgc 740

                                                                       
Query: 503 atatcaaagggcattgtccagggatcatctattaaagagtcactttcaatgatgattctt 562
           ||||||||||||||| |||  ||||||||||| ||||| ||||| |||||||||||||| 
Sbjct: 741 atatcaaagggcattatccgtggatcatctatcaaagaatcactatcaatgatgattcta 800

                      
Query: 563 gatgaggctga 573
           || ||||||||
Sbjct: 801 gacgaggctga 811
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>gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0005H20, complete sequence
          Length = 135560

 Score =  174 bits (88), Expect = 2e-40
 Identities = 148/168 (88%)
 Strand = Plus / Minus

                                                                         
Query: 184   ggaagggaaggatgttgtcgctaaggccaagactggttccggaaagacctttgcctacct 243
             ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 12590 ggaagggaaggatgtggtcgctaaggccaagactggctccggaaagacctttgcttacct 12531

                                                                         
Query: 244   tctcccgctgctgcaagagctgttgaagttgtgcaaagaagggcgtattcggaaatctgc 303
             ||||||  ||||||| ||||| ||||||||||    |||||||||||| || ||||||||
Sbjct: 12530 tctccctatgctgcatgagctattgaagttgtctgcagaagggcgtatccgaaaatctgc 12471

                                                             
Query: 304   atcaaatgccttaatactggtgccaactcgcgagttatgccagcaggt 351
               ||||||  || || || |||||||||||||||||||||||||||||
Sbjct: 12470 tccaaatgttttcatccttgtgccaactcgcgagttatgccagcaggt 12423



 Score =  131 bits (66), Expect = 3e-27
 Identities = 105/118 (88%)
 Strand = Plus / Minus

                                                                         
Query: 444   ttgcattgtctgggccccctaatattctggtgacaaccccagcttgtgttgcagcatgca 503
             ||||||||||||| ||||||||||| || || ||||| || |||||||||||| ||||||
Sbjct: 11956 ttgcattgtctggcccccctaatatacttgttacaactcctgcttgtgttgcatcatgca 11897

                                                                       
Query: 504   tatcaaagggcattgtccagggatcatctattaaagagtcactttcaatgatgattct 561
             |||||||||||||| |||  ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 11896 tatcaaagggcattatccgtggatcatctatcaaagaatcactatcaatgatgattct 11839



 Score =  109 bits (55), Expect = 1e-20
 Identities = 91/103 (88%)
 Strand = Plus / Minus

                                                                         
Query: 83    tttgatgagcttgggctggacgagcagctcaagagggccctgaggaagaagggcttgacc 142
             ||||| ||||||||  |||||||||| || ||||||||  |||||||||||||||||  |
Sbjct: 13160 tttgacgagcttggcttggacgagcaactgaagagggctttgaggaagaagggcttggac 13101

                                                        
Query: 143   aagaccaccccgatccagcgggaggccatcccgctcatcctgg 185
             ||| |||||||||||||| | ||||||||||||||||||||||
Sbjct: 13100 aaggccaccccgatccagagagaggccatcccgctcatcctgg 13058



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                         
Query: 354   ataatgaggcatcatctctccttgagttgtgtacatccaagttgaagattgttcaagtga 413
             ||||||||||||||||||||||||| || ||||||||||| |||||| |||| |||||||
Sbjct: 12147 ataatgaggcatcatctctccttgaattctgtacatccaaattgaaggttgtgcaagtga 12088

                                       
Query: 414   ccgcgagcatgtcagataaggatatt 439
               |||||||||||||| || ||||||
Sbjct: 12087 atgcgagcatgtcagacaaagatatt 12062
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  174 bits (88), Expect = 2e-40
 Identities = 148/168 (88%)
 Strand = Plus / Plus

                                                                            
Query: 184      ggaagggaaggatgttgtcgctaaggccaagactggttccggaaagacctttgcctacct 243
                ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 29474711 ggaagggaaggatgtggtcgctaaggccaagactggctccggaaagacctttgcttacct 29474770

                                                                            
Query: 244      tctcccgctgctgcaagagctgttgaagttgtgcaaagaagggcgtattcggaaatctgc 303
                ||||||  ||||||| ||||| ||||||||||    |||||||||||| || ||||||||
Sbjct: 29474771 tctccctatgctgcatgagctattgaagttgtctgcagaagggcgtatccgaaaatctgc 29474830

                                                                
Query: 304      atcaaatgccttaatactggtgccaactcgcgagttatgccagcaggt 351
                  ||||||  || || || |||||||||||||||||||||||||||||
Sbjct: 29474831 tccaaatgttttcatccttgtgccaactcgcgagttatgccagcaggt 29474878



 Score =  131 bits (66), Expect = 3e-27
 Identities = 105/118 (88%)
 Strand = Plus / Plus

                                                                            
Query: 444      ttgcattgtctgggccccctaatattctggtgacaaccccagcttgtgttgcagcatgca 503
                ||||||||||||| ||||||||||| || || ||||| || |||||||||||| ||||||
Sbjct: 29475345 ttgcattgtctggcccccctaatatacttgttacaactcctgcttgtgttgcatcatgca 29475404

                                                                          
Query: 504      tatcaaagggcattgtccagggatcatctattaaagagtcactttcaatgatgattct 561
                |||||||||||||| |||  ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 29475405 tatcaaagggcattatccgtggatcatctatcaaagaatcactatcaatgatgattct 29475462



 Score =  109 bits (55), Expect = 1e-20
 Identities = 91/103 (88%)
 Strand = Plus / Plus

                                                                            
Query: 83       tttgatgagcttgggctggacgagcagctcaagagggccctgaggaagaagggcttgacc 142
                ||||| ||||||||  |||||||||| || ||||||||  |||||||||||||||||  |
Sbjct: 29474141 tttgacgagcttggcttggacgagcaactgaagagggctttgaggaagaagggcttggac 29474200

                                                           
Query: 143      aagaccaccccgatccagcgggaggccatcccgctcatcctgg 185
                ||| |||||||||||||| | ||||||||||||||||||||||
Sbjct: 29474201 aaggccaccccgatccagagagaggccatcccgctcatcctgg 29474243



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                            
Query: 354      ataatgaggcatcatctctccttgagttgtgtacatccaagttgaagattgttcaagtga 413
                ||||||||||||||||||||||||| || ||||||||||| |||||| |||| |||||||
Sbjct: 29475154 ataatgaggcatcatctctccttgaattctgtacatccaaattgaaggttgtgcaagtga 29475213

                                          
Query: 414      ccgcgagcatgtcagataaggatatt 439
                  |||||||||||||| || ||||||
Sbjct: 29475214 atgcgagcatgtcagacaaagatatt 29475239
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  174 bits (88), Expect = 2e-40
 Identities = 148/168 (88%)
 Strand = Plus / Plus

                                                                            
Query: 184      ggaagggaaggatgttgtcgctaaggccaagactggttccggaaagacctttgcctacct 243
                ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 29566133 ggaagggaaggatgtggtcgctaaggccaagactggctccggaaagacctttgcttacct 29566192

                                                                            
Query: 244      tctcccgctgctgcaagagctgttgaagttgtgcaaagaagggcgtattcggaaatctgc 303
                ||||||  ||||||| ||||| ||||||||||    |||||||||||| || ||||||||
Sbjct: 29566193 tctccctatgctgcatgagctattgaagttgtctgcagaagggcgtatccgaaaatctgc 29566252

                                                                
Query: 304      atcaaatgccttaatactggtgccaactcgcgagttatgccagcaggt 351
                  ||||||  || || || |||||||||||||||||||||||||||||
Sbjct: 29566253 tccaaatgttttcatccttgtgccaactcgcgagttatgccagcaggt 29566300



 Score =  131 bits (66), Expect = 3e-27
 Identities = 105/118 (88%)
 Strand = Plus / Plus

                                                                            
Query: 444      ttgcattgtctgggccccctaatattctggtgacaaccccagcttgtgttgcagcatgca 503
                ||||||||||||| ||||||||||| || || ||||| || |||||||||||| ||||||
Sbjct: 29566767 ttgcattgtctggcccccctaatatacttgttacaactcctgcttgtgttgcatcatgca 29566826

                                                                          
Query: 504      tatcaaagggcattgtccagggatcatctattaaagagtcactttcaatgatgattct 561
                |||||||||||||| |||  ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 29566827 tatcaaagggcattatccgtggatcatctatcaaagaatcactatcaatgatgattct 29566884



 Score =  109 bits (55), Expect = 1e-20
 Identities = 91/103 (88%)
 Strand = Plus / Plus

                                                                            
Query: 83       tttgatgagcttgggctggacgagcagctcaagagggccctgaggaagaagggcttgacc 142
                ||||| ||||||||  |||||||||| || ||||||||  |||||||||||||||||  |
Sbjct: 29565563 tttgacgagcttggcttggacgagcaactgaagagggctttgaggaagaagggcttggac 29565622

                                                           
Query: 143      aagaccaccccgatccagcgggaggccatcccgctcatcctgg 185
                ||| |||||||||||||| | ||||||||||||||||||||||
Sbjct: 29565623 aaggccaccccgatccagagagaggccatcccgctcatcctgg 29565665



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                            
Query: 354      ataatgaggcatcatctctccttgagttgtgtacatccaagttgaagattgttcaagtga 413
                ||||||||||||||||||||||||| || ||||||||||| |||||| |||| |||||||
Sbjct: 29566576 ataatgaggcatcatctctccttgaattctgtacatccaaattgaaggttgtgcaagtga 29566635

                                          
Query: 414      ccgcgagcatgtcagataaggatatt 439
                  |||||||||||||| || ||||||
Sbjct: 29566636 atgcgagcatgtcagacaaagatatt 29566661
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>gb|BT018395.1| Zea mays clone EL01N0320F03.d mRNA sequence
          Length = 1758

 Score =  149 bits (75), Expect = 1e-32
 Identities = 144/167 (86%)
 Strand = Plus / Plus

                                                                       
Query: 407 caagtgaccgcgagcatgtcagataaggatattaaacttgcattgtctgggccccctaat 466
           ||||| |||||||||||||| ||||||||||||    ||||||||||||| |||||||| 
Sbjct: 12  caagttaccgcgagcatgtcggataaggatattcttgttgcattgtctggcccccctaac 71

                                                                       
Query: 467 attctggtgacaaccccagcttgtgttgcagcatgcatatcaaagggcattgtccaggga 526
           ||||| ||  |||| ||||||||||||||| |||||||||||||||| ||| | |  |||
Sbjct: 72  attctcgtatcaactccagcttgtgttgcaacatgcatatcaaagggaattattcgtgga 131

                                                          
Query: 527 tcatctattaaagagtcactttcaatgatgattcttgatgaggctga 573
            |  |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cctgcagttaaagagtcactttcaatgatgattcttgatgaggctga 178
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>ref|XM_482407.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2915

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 147 ccaccccgatccagcgggaggccatcccgctcatcct 183
           ||||||| ||||||||| ||||||| |||||||||||
Sbjct: 378 ccacccccatccagcggaaggccatgccgctcatcct 414
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>gb|AY644647.1| Oryza sativa (indica cultivar-group) putative ATP-dependent RNA
           helicase (RNAH) mRNA, complete cds
          Length = 2799

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 147 ccaccccgatccagcgggaggccatcccgctcatcct 183
           ||||||| ||||||||| ||||||| |||||||||||
Sbjct: 239 ccacccccatccagcggaaggccatgccgctcatcct 275
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 147      ccaccccgatccagcgggaggccatcccgctcatcct 183
                ||||||| ||||||||| ||||||| |||||||||||
Sbjct: 19900126 ccacccccatccagcggaaggccatgccgctcatcct 19900090
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>dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0433E10
          Length = 144643

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 147   ccaccccgatccagcgggaggccatcccgctcatcct 183
             ||||||| ||||||||| ||||||| |||||||||||
Sbjct: 68304 ccacccccatccagcggaaggccatgccgctcatcct 68268
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>dbj|AK070406.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054K02, full
           insert sequence
          Length = 2915

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 147 ccaccccgatccagcgggaggccatcccgctcatcct 183
           ||||||| ||||||||| ||||||| |||||||||||
Sbjct: 378 ccacccccatccagcggaaggccatgccgctcatcct 414
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>gb|AC002386.2| Homo sapiens BAC clone CTA-343H22 from 7, complete sequence
          Length = 131458

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 425   tcagataaggatattaaacttgc 447
             |||||||||||||||||||||||
Sbjct: 37877 tcagataaggatattaaacttgc 37899
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>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009
          Length = 1913118

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 212    aagactggttccggaaagacctt 234
              |||||||||||||||||||||||
Sbjct: 646755 aagactggttccggaaagacctt 646777
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>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete
             sequence
          Length = 1085720

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 206   aaggccaagactggttccggaaagac 231
             ||||||||||||||| ||||||||||
Sbjct: 54788 aaggccaagactggtaccggaaagac 54763
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>ref|XM_389916.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09740.1)
           partial mRNA
          Length = 2235

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 215 actggttccggaaagacctttgcctacctt 244
           |||||||||||||||||||| || ||||||
Sbjct: 589 actggttccggaaagaccttggcttacctt 618
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>ref|XM_567279.1| Cryptococcus neoformans var. neoformans JEC21 RNA helicase
           (CNJ00220) partial mRNA
          Length = 2562

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 206 aaggccaagactggttccggaaagac 231
           ||||||||||||||| ||||||||||
Sbjct: 505 aaggccaagactggtaccggaaagac 530
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>gb|AC109145.11| Mus musculus chromosome 1, clone RP23-109O14, complete sequence
          Length = 186661

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 303    catcaaatgccttaatactgg 323
              |||||||||||||||||||||
Sbjct: 145492 catcaaatgccttaatactgg 145472
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>gb|AC139206.5| Mus musculus chromosome 1, clone RP23-82P18, complete sequence
          Length = 304494

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 303    catcaaatgccttaatactgg 323
              |||||||||||||||||||||
Sbjct: 287406 catcaaatgccttaatactgg 287426
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>gb|AC099055.2| Homo sapiens chromosome 3 clone RP11-527L9, complete sequence
          Length = 155962

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 471   tggtgacaaccccagcttgtgttgc 495
             ||||||||||| |||||||||||||
Sbjct: 89363 tggtgacaacctcagcttgtgttgc 89339
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>gb|AC105924.4| Homo sapiens BAC clone RP11-706F1 from 4, complete sequence
          Length = 160050

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 387   catccaagttgaagattgttc 407
             |||||||||||||||||||||
Sbjct: 96358 catccaagttgaagattgttc 96378
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>gb|AF112114.1|AF112114 Mus musculus CD21 gene intron 1, complete sequence
          Length = 5551

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 303  catcaaatgccttaatactgg 323
            |||||||||||||||||||||
Sbjct: 1245 catcaaatgccttaatactgg 1225
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>emb|AL928741.2| Mouse DNA sequence from clone RP23-264P3 on chromosome 2, complete
             sequence
          Length = 185830

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 492   ttgcagcatgcatatcaaagggcat 516
             |||||||||||||| ||||||||||
Sbjct: 90172 ttgcagcatgcataccaaagggcat 90196
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>ref|XM_652645.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0133.2), mRNA
          Length = 2310

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 agactggttccggaaagacc 232
           ||||||||||||||||||||
Sbjct: 368 agactggttccggaaagacc 387
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>gb|AY588245.1| Homo sapiens MCM4 minichromosome maintenance deficient 4 (S.
            cerevisiae) (MCM4) gene, complete cds
          Length = 19473

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 117  gggccctgaggaagaagggc 136
            ||||||||||||||||||||
Sbjct: 5961 gggccctgaggaagaagggc 5980
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>ref|XM_384308.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04132.1)
           partial mRNA
          Length = 1668

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 agactggttccggaaagacc 232
           ||||||||||||||||||||
Sbjct: 536 agactggttccggaaagacc 555
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>emb|AL928709.36| Zebrafish DNA sequence from clone CH211-127L5 in linkage group 17,
            complete sequence
          Length = 166456

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 525  gatcatctattaaagagtcacttt 548
            ||||||||||||||||| ||||||
Sbjct: 3686 gatcatctattaaagagacacttt 3709
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>gb|AC122729.23| Medicago truncatula clone mth1-62g18, complete sequence
          Length = 82977

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 430   taaggatattaaacttgcat 449
             ||||||||||||||||||||
Sbjct: 62883 taaggatattaaacttgcat 62864
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>emb|Z84488.1|HS93H18 Human DNA sequence from clone RP1-93H18 on chromosome 6q21 Contains the
              3' end of a novel gene, the SART2 gene for squamous cell
              carcinoma antigen recognised by T cell, a chromobox homolog
              3 (HP1 gamma homolog, Drosophila) (CBX3) pseudogene, a
              keratin 18 (KRT18) pseudogene, a novel gene, part of a
              novel gene and two CpG islands, complete sequence
          Length = 160378

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 422    atgtcagataaggatattaa 441
              ||||||||||||||||||||
Sbjct: 115925 atgtcagataaggatattaa 115906
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>emb|AL365508.19| Human DNA sequence from clone RP11-301B7 on chromosome 6 Contains part
             of the gene for a novel protein highly similar to
             FLJ30899, complete sequence
          Length = 96315

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 419   agcatgtcagataaggatattaaacttgcatt 450
             ||||| ||||||||||||| | ||||||||||
Sbjct: 71726 agcatttcagataaggatactcaacttgcatt 71757
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>emb|AL672010.8| Mouse DNA sequence from clone RP23-223C15 on chromosome 11 Contains three
              novel genes and a CpG island, complete sequence
          Length = 193223

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    agagggccctgaggaagaag 133
              ||||||||||||||||||||
Sbjct: 185501 agagggccctgaggaagaag 185520
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>gb|AC021236.10| Homo sapiens chromosome 8, clone RP11-113H14, complete sequence
          Length = 162259

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   gggccctgaggaagaagggc 136
             ||||||||||||||||||||
Sbjct: 99383 gggccctgaggaagaagggc 99364
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>gb|U63630.4|HSU63630 Homo sapiens MCM4 (MCM4) and DNA-PKcs (PRKDC) genes, partial cds
          Length = 93443

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  gggccctgaggaagaagggc 136
            ||||||||||||||||||||
Sbjct: 7739 gggccctgaggaagaagggc 7720
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>gb|AC110296.3| Homo sapiens BAC clone RP11-120A1 from 4, complete sequence
          Length = 132626

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   atctctccttgagttgtgta 386
             ||||||||||||||||||||
Sbjct: 51256 atctctccttgagttgtgta 51237
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>gb|AC068492.2| Homo sapiens BAC clone RP11-809C23 from 2, complete sequence
          Length = 172281

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 497    gcatgcatatcaaagggcat 516
              ||||||||||||||||||||
Sbjct: 153532 gcatgcatatcaaagggcat 153551
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>ref|XM_344187.2| PREDICTED: Rattus norvegicus similar to probable ATP-dependent RNA
            helicase - mouse (predicted) (LOC364073), mRNA
          Length = 3768

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 86   gatgagcttgggctggacgagcag 109
            |||||||||||||||||| |||||
Sbjct: 1414 gatgagcttgggctggaccagcag 1437
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>dbj|AK111212.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-A09, full
           insert sequence
          Length = 2284

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 agactggttccggaaagacc 232
           ||||||||||||||||||||
Sbjct: 711 agactggttccggaaagacc 730
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>gb|AC140938.1| Gallus gallus BAC clone TAM32-30F4 from chromosome ul, complete
             sequence
          Length = 122857

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   tgtataatgaggcatcatct 370
             ||||||||||||||||||||
Sbjct: 47876 tgtataatgaggcatcatct 47857
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>dbj|AP006390.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT04O07, TM0264,
             complete sequence
          Length = 52203

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 539   gagtcactttcaatgatgat 558
             ||||||||||||||||||||
Sbjct: 33314 gagtcactttcaatgatgat 33333
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>dbj|AP004483.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT13O04, TM0016,
             complete sequence
          Length = 122116

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   aaagagtcactttcaatgat 555
             ||||||||||||||||||||
Sbjct: 35066 aaagagtcactttcaatgat 35047


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,022,673
Number of Sequences: 3902068
Number of extensions: 4022673
Number of successful extensions: 76166
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76005
Number of HSP's gapped (non-prelim): 156
length of query: 573
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 550
effective length of database: 17,143,297,704
effective search space: 9428813737200
effective search space used: 9428813737200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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