>YM23_YEAST (P40215) Hypothetical 62.8 kDa protein in RPS16A-TIF34 intergenic|
           region
          Length = 560

 Score =  113 bits (282), Expect = 4e-25
 Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 11/135 (8%)
 Frame = +3

Query: 93  FNNRPTFTGLVVVLAASSGGGLVAYA---DSQPDQ--------PQGFKKKKVVVLGTGWA 239
           F     FT   ++ +A +G   V+Y+   ++ P          P G K+K +V+LG+GW 
Sbjct: 64  FKRTGKFTLKALLYSALAGTAYVSYSLYREANPSTQVPQSDTFPNGSKRKTLVILGSGWG 123

Query: 240 GTTFLRNLDSKLYDVQVISPRNYFAFTPLLPSVTCGTVEPRSVVEPIRRILEKKGGDFKF 419
             + L+NLD+ LY+V V+SPRNYF FTPLLPS   GT+E +S+VEP+R I  +  G+  +
Sbjct: 124 SVSLLKNLDTTLYNVVVVSPRNYFLFTPLLPSTPVGTIELKSIVEPVRTIARRSHGEVHY 183

Query: 420 WEAECFKIDPANKKI 464
           +EAE + +DP NK I
Sbjct: 184 YEAEAYDVDPENKTI 198

>NDI1_YEAST (P32340) Rotenone-insensitive NADH-ubiquinone oxidoreductase,|
           mitochondrial precursor (EC 1.6.5.3) (Internal NADH
           dehydrogenase)
          Length = 513

 Score = 99.0 bits (245), Expect = 7e-21
 Identities = 45/103 (43%), Positives = 68/103 (66%)
 Frame = +3

Query: 141 SSGGGLVAYADSQPDQPQGFKKKKVVVLGTGWAGTTFLRNLDSKLYDVQVISPRNYFAFT 320
           +SG G  ++   +   PQ   K  V++LG+GW   +FL+++D+K Y+V +ISPR+YF FT
Sbjct: 32  NSGAGPTSFKTMKVIDPQHSDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFT 91

Query: 321 PLLPSVTCGTVEPRSVVEPIRRILEKKGGDFKFWEAECFKIDP 449
           PLLPS   GTV+ +S++EPI     KK G+  ++EAE   I+P
Sbjct: 92  PLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATSINP 134

>COPB_ENTHR (P05425) Probable copper exporting ATPase B (EC 3.6.3.4)|
          Length = 745

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -1

Query: 148 PLLAARTTTRPVKVGRLLKARDALSHANAVHLIFL-PTGTL 29
           PL+ AR+T+   K G LLK R+A+  AN + +I L  TGTL
Sbjct: 405 PLVVARSTSIAAKNGLLLKNRNAMEQANDLDVIMLDKTGTL 445

>NAOX_MYCPN (P75389) Probable NADH oxidase (EC 1.6.99.3) (NOXase)|
          Length = 479

 Score = 33.5 bits (75), Expect = 0.36
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 207 KKVVVLGTGWAGTTFLRNLDSKLYDVQV 290
           KKV+V+G   AGT+F+R L SK  D QV
Sbjct: 2   KKVIVIGVNHAGTSFIRTLLSKSKDFQV 29

>NADD_AQUAE (O66452) Probable nicotinate-nucleotide adenylyltransferase (EC|
           2.7.7.18) (Deamido-NAD(+) pyrophosphorylase)
           (Deamido-NAD(+) diphosphorylase) (Nicotinate
           mononucleotide adenylyltransferase) (NaMN
           adenylyltransferase)
          Length = 168

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 118 PVKVGRLLKARDALSHANAVHLIFLPT 38
           PV VG ++ ARD   H NA  +IF+PT
Sbjct: 11  PVHVGHIILARDVCEHFNAKEVIFVPT 37

>ADEN_ADEF1 (Q9IIH4) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 204

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -1

Query: 220 TTTFFFLNPWGWSG*E--SAYATRPPPLLAARTTTRPVKVGRLLKARDAL 77
           T+TFF  +P+GWS  E    Y  +   +L +   T+P +  +L+K+++A+
Sbjct: 64  TSTFFMFDPFGWSDMELYRKYEFQYHRILKSTALTKPSRCIKLVKSKEAV 113

>NAOX_MYCGE (Q49408) Probable NADH oxidase (EC 1.6.99.3) (NOXase)|
          Length = 478

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 207 KKVVVLGTGWAGTTFLRNLDSKLYDVQV 290
           KKV+V+G   AGT+F+R L SK  D +V
Sbjct: 2   KKVIVIGINHAGTSFIRTLLSKSKDFKV 29

>RHO3_SCHPO (O13928) Protein rho3|
          Length = 205

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +3

Query: 195 GFKKK----KVVVLGTGWAGTTFLRNLDSKLYDVQVISP 299
           G KKK    K+V+LG G AG T L N+ +K Y  QV  P
Sbjct: 6   GSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEP 44

>GPMI_VIBCH (Q9KV22) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 510

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 323 GCECKVVPR*NDLDIIQFAIKIPQECGASPASSKNHYFLLFKSLGLVRLRIRICDEASST 144
           G   K  P  + + + Q+A  IP +C   PAS +N Y       G  +LRI   ++ +  
Sbjct: 279 GFSRKAFPALDFVMLTQYAADIPLQCAFGPASLENTYGEWLSKAGKTQLRISETEKYAHV 338

Query: 143 T 141
           T
Sbjct: 339 T 339

>GLF1_KLEPN (Q48485) Probable UDP-galactopyranose mutase (EC 5.4.99.9)|
          Length = 384

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 201 KKKKVVVLGTGWAGTTFLRNLDSKLYDVQVISPRNY 308
           K KK++++G G++G    R L  K + V +I  R++
Sbjct: 2   KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 37

>FABZ_BURPS (Q63T23) (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase|
           (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase)
          Length = 155

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 93  FNNRPTFTGLVVVLAASSGGGLVAYADSQPDQPQ 194
           F  RP   G++++ A +    L+ +A++QP  P+
Sbjct: 55  FPKRPVMPGVLIIEALAQAAALLTFAEAQPKDPE 88

>FABZ_BURP1 (Q3JR40) (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase|
           (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase)
          Length = 155

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 93  FNNRPTFTGLVVVLAASSGGGLVAYADSQPDQPQ 194
           F  RP   G++++ A +    L+ +A++QP  P+
Sbjct: 55  FPKRPVMPGVLIIEALAQAAALLTFAEAQPKDPE 88

>FABZ_BURMA (Q62JD5) (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase|
           (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase)
          Length = 155

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 93  FNNRPTFTGLVVVLAASSGGGLVAYADSQPDQPQ 194
           F  RP   G++++ A +    L+ +A++QP  P+
Sbjct: 55  FPKRPVMPGVLIIEALAQAAALLTFAEAQPKDPE 88

>YHCL_BACSU (P54596) Hypothetical symporter yhcL|
          Length = 463

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 102 RPTFTGLVVVLAASSGGGLVAYADSQPDQPQGFKK 206
           RPT T  VV+ AA  G   +     QP+Q + FKK
Sbjct: 183 RPTSTIAVVIFAAFLGVAFLGVKHKQPEQAETFKK 217

>GBLP_MEDSA (O24076) Guanine nucleotide-binding protein beta subunit-like|
           protein
          Length = 325

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = -1

Query: 154 PPPLLAARTTTRPVKVGRLL--KARDALS-HANAVHLIFL-PTGTLCSSSGAXGI 2
           P P + + +  R VKV  L   K R+ L+ H+  V+ + + P G+LC+S G  G+
Sbjct: 162 PQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGV 216

>ADA28_HUMAN (Q9UKQ2) ADAM 28 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 28) (Metalloproteinase-like,
           disintegrin-like, and cysteine-rich protein-L) (MDC-L)
           (eMDC II) (ADAM23)
          Length = 775

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 336 VTCGTVEPRSVVEPIRRILE-KKGGDFKFW-EAECFKIDPANKKIHCRLKC 482
           +TC T +P    + I  +    K GD K    AEC  I+ A K  +C  KC
Sbjct: 583 LTCKTFDPEDTSQEIGMVANGTKCGDNKVCINAECVDIEKAYKSTNCSSKC 633

>ADA28_MACFA (Q9XSL6) ADAM 28 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 28) (eMDC II)
          Length = 776

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 336 VTCGTVEPRSVVEPIRRILE--KKGGDFKFWEAECFKIDPANKKIHCRLKC 482
           +TC T +P    E I  +    K G +     AEC  I+ A K  +C  KC
Sbjct: 584 LTCKTFDPEDTSEEIGMVANGTKCGHNKVCINAECVDIEKAYKSTNCSSKC 634

>DADA3_RHILO (Q981X2) D-amino acid dehydrogenase 3 small subunit (EC 1.4.99.1)|
          Length = 412

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 210 KVVVLGTGWAGTTFLRNLDSKLYDVQVISPRNYFA 314
           K+VV+G G AG +    L  + YDV V+  R Y A
Sbjct: 3   KIVVIGAGIAGVSTAYALLEQGYDVTVVERRRYAA 37

>DCAM2_ARATH (Q9S7T9) S-adenosylmethionine decarboxylase proenzyme 2 (EC|
           4.1.1.50) (AdoMetDC 2) (SamDC 2) [Contains:
           S-adenosylmethionine decarboxylase 2 alpha chain;
           S-adenosylmethionine decarboxylase 2 beta chain]
          Length = 362

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 26/92 (28%), Positives = 40/92 (43%)
 Frame = +3

Query: 141 SSGGGLVAYADSQPDQPQGFKKKKVVVLGTGWAGTTFLRNLDSKLYDVQVISPRNYFAFT 320
           + G GL A A SQ D+          +L    A  T + +L +   D  V+S  + F F 
Sbjct: 28  TQGKGLRALAKSQIDE----------ILQP--AECTIVSSLSNDQLDSYVLSESSLFIFP 75

Query: 321 PLLPSVTCGTVEPRSVVEPIRRILEKKGGDFK 416
             +   TCGT +    +EP+ R+  +   D K
Sbjct: 76  YKIVIKTCGTTKLLLSIEPLLRLAGELSLDVK 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,129,486
Number of Sequences: 219361
Number of extensions: 1625641
Number of successful extensions: 5730
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5730
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)