ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags21b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X81828.1|ZMCP71C1G Z.mays CYP71C1 gene for cytochrome P-450 48 0.030
2emb|X81827.1|ZMCYP71C1 Z.mays CYP71C1 mRNA for cytochrome P-450 48 0.030
3gb|AY105992.1| Zea mays PCO117584 mRNA sequence 44 0.48
4gb|AC087416.18| Mus musculus strain C57BL/6J chromosome 2 clone ... 44 0.48
5emb|AL805918.5| Mouse DNA sequence from clone RP23-191L7 on chro... 44 0.48
6gb|AC140294.3| Mus musculus BAC clone RP23-359G16 from chromosom... 42 1.9
7gb|AC129322.3| Mus musculus BAC clone RP23-220F4 from chromosome... 42 1.9
8gb|AC117498.6| Homo sapiens 12 BAC RP11-579D7 (Roswell Park Canc... 42 1.9
9gb|AC073610.17| Homo sapiens 12 BAC RP11-302B13 (Roswell Park Ca... 42 1.9
10gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 7.4
11ref|XM_479695.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.4
12ref|XM_599815.2| PREDICTED: Bos taurus similar to zinc finger pr... 40 7.4
13gb|AY673603.1| Homo sapiens matrix metalloproteinase 20 (enamely... 40 7.4
14gb|BC037473.1| Mus musculus Ellis van Creveld syndrome 2 homolog... 40 7.4
15ref|XM_953936.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.4
16ref|XM_331392.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.4
17ref|NM_145920.2| Mus musculus Ellis van Creveld syndrome 2 homol... 40 7.4
18emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 7.4
19gb|BC064473.1| Mus musculus Ellis van Creveld syndrome 2 homolog... 40 7.4
20gb|AF461121.1| Escherichia coli serotype O55:H7 O-antigen gene c... 40 7.4
21dbj|AK134298.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 7.4
22dbj|AK165051.1| Mus musculus 2 days pregnant adult female oviduc... 40 7.4
23dbj|AK044977.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 40 7.4
24dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
25gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, ... 40 7.4
26gb|AE004673.1| Pseudomonas aeruginosa PAO1, section 234 of 529 o... 40 7.4
27gb|AE004443.1| Pseudomonas aeruginosa PAO1, section 4 of 529 of ... 40 7.4
28gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 7.4
29emb|AL824704.27| Mouse DNA sequence from clone RP23-286H14 on ch... 40 7.4
30dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
31dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
32gb|AC110565.7| Mus musculus chromosome 5, clone RP23-297N19, com... 40 7.4
33dbj|AP001274.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.4
34dbj|AP002427.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.4
35dbj|AP000851.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.4
36gb|AF004210.1|AF004210 Zea mays cytochrome P-450 (CYP71C1) mRNA,... 40 7.4
37dbj|AB083066.1| Mus musculus LBN mRNA for limbin, complete cds 40 7.4
38emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on ch... 40 7.4
39gb|CP000036.1| Shigella boydii Sb227, complete genome 40 7.4
40gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 7.4 
>emb|X81828.1|ZMCP71C1G Z.mays CYP71C1 gene for cytochrome P-450
          Length = 4352

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 149  ggcggcttcaacgtgggggactacttcccggagctg 184
            ||||| |||||||||| ||||||||||||| |||||
Sbjct: 2853 ggcgggttcaacgtggaggactacttcccgaagctg 2888
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>emb|X81827.1|ZMCYP71C1 Z.mays CYP71C1 mRNA for cytochrome P-450
          Length = 1890

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 149 ggcggcttcaacgtgggggactacttcccggagctg 184
           ||||| |||||||||| ||||||||||||| |||||
Sbjct: 799 ggcgggttcaacgtggaggactacttcccgaagctg 834
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>gb|AY105992.1| Zea mays PCO117584 mRNA sequence
          Length = 2038

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 155  ttcaacgtgggggactacttcccggagctg 184
            |||||||||| ||||||||||||| |||||
Sbjct: 986  ttcaacgtggaggactacttcccgaagctg 1015
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>gb|AC087416.18| Mus musculus strain C57BL/6J chromosome 2 clone rp23-224l16, complete
              sequence
          Length = 183349

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 27     gcgagctgctcagtgccttctc 48
              ||||||||||||||||||||||
Sbjct: 137687 gcgagctgctcagtgccttctc 137708
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>emb|AL805918.5| Mouse DNA sequence from clone RP23-191L7 on chromosome 2, complete
              sequence
          Length = 213625

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 27     gcgagctgctcagtgccttctc 48
              ||||||||||||||||||||||
Sbjct: 177364 gcgagctgctcagtgccttctc 177385
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>gb|AC140294.3| Mus musculus BAC clone RP23-359G16 from chromosome 19, complete
             sequence
          Length = 190551

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 218   ggcagggccaggagagtgaac 238
             |||||||||||||||||||||
Sbjct: 45003 ggcagggccaggagagtgaac 44983
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>gb|AC129322.3| Mus musculus BAC clone RP23-220F4 from chromosome 19, complete
            sequence
          Length = 182093

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 218  ggcagggccaggagagtgaac 238
            |||||||||||||||||||||
Sbjct: 1721 ggcagggccaggagagtgaac 1741
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>gb|AC117498.6| Homo sapiens 12 BAC RP11-579D7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 144383

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 115  cagggagctggtggagaccaa 135
            |||||||||||||||||||||
Sbjct: 2508 cagggagctggtggagaccaa 2528
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>gb|AC073610.17| Homo sapiens 12 BAC RP11-302B13 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 104593

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 115  cagggagctggtggagaccaa 135
            |||||||||||||||||||||
Sbjct: 5258 cagggagctggtggagaccaa 5238
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    cccggagctgctgaagctgg 194
              ||||||||||||||||||||
Sbjct: 840878 cccggagctgctgaagctgg 840897
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>ref|XM_479695.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1587

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 394  catgtttggagctggcacggacacatcatacatagt 429
            |||||||| ||| |||||||||||||| ||| ||||
Sbjct: 981  catgtttgaagcaggcacggacacatcgtacttagt 1016
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>ref|XM_599815.2| PREDICTED: Bos taurus similar to zinc finger protein 329 (LOC521551),
            mRNA
          Length = 3798

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 73   gtgcggcaagtccttcaggcagaa 96
            |||||||||||||||| |||||||
Sbjct: 2679 gtgcggcaagtccttccggcagaa 2702
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>gb|AY673603.1| Homo sapiens matrix metalloproteinase 20 (enamelysin) (MMP20) gene,
             complete cds
          Length = 52428

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   cctcatccatgaacatgaga 284
             ||||||||||||||||||||
Sbjct: 42105 cctcatccatgaacatgaga 42086
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>gb|BC037473.1| Mus musculus Ellis van Creveld syndrome 2 homolog (human), mRNA (cDNA
            clone MGC:47318 IMAGE:4237472), complete cds
          Length = 4107

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 262  aagcctcatccatgaacatgagag 285
            ||||||||||||| ||||||||||
Sbjct: 1644 aagcctcatccataaacatgagag 1667
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>ref|XM_953936.1| Neurospora crassa OR74A hypothetical protein (NCU09001.1) partial
           mRNA
          Length = 1719

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 tggcggcttcaacgtggggg 167
           ||||||||||||||||||||
Sbjct: 201 tggcggcttcaacgtggggg 220
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>ref|XM_331392.1| Neurospora crassa OR74A hypothetical protein (NCU09001.1) partial
           mRNA
          Length = 1719

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 tggcggcttcaacgtggggg 167
           ||||||||||||||||||||
Sbjct: 201 tggcggcttcaacgtggggg 220
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>ref|NM_145920.2| Mus musculus Ellis van Creveld syndrome 2 homolog (human) (Evc2),
            mRNA
          Length = 4107

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 262  aagcctcatccatgaacatgagag 285
            ||||||||||||| ||||||||||
Sbjct: 1644 aagcctcatccataaacatgagag 1667
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>emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 2/10
          Length = 313050

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    tgaagctggacatcatcagg 205
              ||||||||||||||||||||
Sbjct: 201451 tgaagctggacatcatcagg 201470
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>gb|BC064473.1| Mus musculus Ellis van Creveld syndrome 2 homolog (human), mRNA (cDNA
            clone MGC:70212 IMAGE:3156380), complete cds
          Length = 4117

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 262  aagcctcatccatgaacatgagag 285
            ||||||||||||| ||||||||||
Sbjct: 1654 aagcctcatccataaacatgagag 1677
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>gb|AF461121.1| Escherichia coli serotype O55:H7 O-antigen gene cluster, complete
             sequence
          Length = 27730

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   tcccggagctgctgaagctg 193
             ||||||||||||||||||||
Sbjct: 24768 tcccggagctgctgaagctg 24749
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>dbj|AK134298.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030401H11 product:Ellis van
            Creveld syndrome 2 homolog (human), full insert sequence
          Length = 1767

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 262  aagcctcatccatgaacatgagag 285
            ||||||||||||| ||||||||||
Sbjct: 1646 aagcctcatccataaacatgagag 1669
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>dbj|AK165051.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
            full-length enriched library, clone:E230015K17
            product:Ellis van Creveld syndrome 2 homolog (human),
            full insert sequence
          Length = 1672

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 262  aagcctcatccatgaacatgagag 285
            ||||||||||||| ||||||||||
Sbjct: 1548 aagcctcatccataaacatgagag 1571
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>dbj|AK044977.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
            enriched library, clone:B130017E20 product:hypothetical
            protein, full insert sequence
          Length = 2797

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 262  aagcctcatccatgaacatgagag 285
            ||||||||||||| ||||||||||
Sbjct: 1534 aagcctcatccataaacatgagag 1557
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 394    catgtttggagctggcacggacacatcatacatagt 429
              |||||||| ||| |||||||||||||| ||| ||||
Sbjct: 302974 catgtttgaagcaggcacggacacatcgtacttagt 303009
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>gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, complete sequence
          Length = 62355

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   tcatgtttggagctggcacg 412
             ||||||||||||||||||||
Sbjct: 45921 tcatgtttggagctggcacg 45940
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>gb|AE004673.1| Pseudomonas aeruginosa PAO1, section 234 of 529 of the complete genome
          Length = 24397

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 281   gagagcaagccggcgccggcgttg 304
             ||||||| ||||||||||||||||
Sbjct: 14782 gagagcaggccggcgccggcgttg 14805
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>gb|AE004443.1| Pseudomonas aeruginosa PAO1, section 4 of 529 of the complete genome
          Length = 19372

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 281   gagagcaagccggcgccggcgttg 304
             ||||||| ||||||||||||||||
Sbjct: 11118 gagagcaggccggcgccggcgttg 11095
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    cccggagctgctgaagctgg 194
              ||||||||||||||||||||
Sbjct: 835696 cccggagctgctgaagctgg 835715
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>emb|AL824704.27| Mouse DNA sequence from clone RP23-286H14 on chromosome 4, complete
             sequence
          Length = 205555

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   agggccaggagagtgaacaa 240
             ||||||||||||||||||||
Sbjct: 91400 agggccaggagagtgaacaa 91419
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>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0450B04
          Length = 153268

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 394   catgtttggagctggcacggacacatcatacatagt 429
             |||||||| ||| |||||||||||||| ||| ||||
Sbjct: 12488 catgtttgaagcaggcacggacacatcgtacttagt 12523
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>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1300_E01
          Length = 103022

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 394   catgtttggagctggcacggacacatcatacatagt 429
             |||||||| ||| |||||||||||||| ||| ||||
Sbjct: 69400 catgtttgaagcaggcacggacacatcgtacttagt 69435
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>gb|AC110565.7| Mus musculus chromosome 5, clone RP23-297N19, complete sequence
          Length = 194214

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 262   aagcctcatccatgaacatgagag 285
             ||||||||||||| ||||||||||
Sbjct: 90966 aagcctcatccataaacatgagag 90989
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>dbj|AP001274.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-840J5, complete
             sequence
          Length = 210282

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    tgctcagtgccttctccacc 52
             ||||||||||||||||||||
Sbjct: 23215 tgctcagtgccttctccacc 23234
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>dbj|AP002427.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-90I16, complete
             sequence
          Length = 154159

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    tgctcagtgccttctccacc 52
             ||||||||||||||||||||
Sbjct: 86930 tgctcagtgccttctccacc 86949
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>dbj|AP000851.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-817J15, complete
             sequences
          Length = 172981

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   cctcatccatgaacatgaga 284
             ||||||||||||||||||||
Sbjct: 38322 cctcatccatgaacatgaga 38341
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>gb|AF004210.1|AF004210 Zea mays cytochrome P-450 (CYP71C1) mRNA, partial cds
          Length = 1185

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 149 ggcggcttcaacgtgggggactacttcccggagctg 184
           ||||| ||||||||||  |||||||||||| |||||
Sbjct: 162 ggcgggttcaacgtggaagactacttcccgaagctg 197
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>dbj|AB083066.1| Mus musculus LBN mRNA for limbin, complete cds
          Length = 3663

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 262  aagcctcatccatgaacatgagag 285
            ||||||||||||| ||||||||||
Sbjct: 1593 aagcctcatccataaacatgagag 1616
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>emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on chromosome 15, complete
            sequence
          Length = 240977

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 360  tcacaagggagcaggtcaaa 379
            ||||||||||||||||||||
Sbjct: 9949 tcacaagggagcaggtcaaa 9930
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    cccggagctgctgaagctgg 194
              ||||||||||||||||||||
Sbjct: 796951 cccggagctgctgaagctgg 796970
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    cccggagctgctgaagctgg 194
              ||||||||||||||||||||
Sbjct: 890922 cccggagctgctgaagctgg 890941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,012,136
Number of Sequences: 3902068
Number of extensions: 4012136
Number of successful extensions: 78741
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78606
Number of HSP's gapped (non-prelim): 132
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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