ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags21b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC111126.16| Mus musculus chromosome 5, clone RP23-336F4, com... 44 0.45
2gb|AC100550.7| Mus musculus chromosome 9, clone RP23-152P11, com... 44 0.45
3emb|AL354896.16| Human DNA sequence from clone RP11-512M17 on ch... 44 0.45
4gb|AC079616.4| Homo sapiens BAC clone RP11-605L5 from 4, complet... 44 0.45
5gb|AC158558.6| Mus musculus chromosome 5, clone RP23-34P11, comp... 44 0.45
6dbj|AP001830.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 44 0.45
7emb|AL358892.13| Mouse DNA sequence from clone RP21-417G6 on chr... 44 0.45
8gb|AC150774.2| Xenopus tropicalis clone CH216-82E5, complete seq... 42 1.8
9gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, com... 42 1.8
10emb|CT025576.8| Mouse DNA sequence from clone RP23-286F8 on chro... 42 1.8
11emb|BX571706.24| Zebrafish DNA sequence from clone DKEYP-123H11 ... 42 1.8
12gb|AC116142.8| Mus musculus chromosome 5, clone RP23-140B23, com... 42 1.8
13gb|AC154836.2| Mus musculus BAC clone RP24-574D17 from chromosom... 42 1.8
14emb|AL590824.6| Human DNA sequence from clone RP11-486E2 on chro... 42 1.8
15emb|AL139379.14| Human DNA sequence from clone RP11-358P11 on ch... 42 1.8
16gb|AC092945.6| Homo sapiens 12 BAC RP11-290O5 (Roswell Park Canc... 42 1.8
17gb|AC079969.5| Homo sapiens chromosome 15, clone RP11-636P14, co... 42 1.8
18gb|AC008533.9| Homo sapiens chromosome 5 clone CTC-483L24, compl... 42 1.8
19gb|AC105415.2| Homo sapiens BAC clone RP11-265O12 from 4, comple... 42 1.8
20gb|AC160983.2| Mus musculus BAC clone RP23-335A9 from chromosome... 42 1.8
21gb|AC011744.8| Homo sapiens BAC clone RP11-324I10 from 4, comple... 42 1.8
22gb|AC058803.5| Homo sapiens chromosome 15, clone RP11-717I24, co... 42 1.8
23tpg|BK000654.1| TPA: TPA_exp: Homo sapiens otopetrin 1 (OTOP1) g... 42 1.8
24gb|AC156942.2| Pan troglodytes BAC clone CH251-541P6 from chromo... 42 1.8
25dbj|BS000127.1| Pan troglodytes chromosome 22 clone:PTB-099K02, ... 42 1.8
26dbj|AB159601.1| Bombyx mori gene for putative transposase yabusa... 42 1.8
27ref|XM_419290.1| PREDICTED: Gallus gallus similar to echinoderm ... 40 7.0
28ref|XM_706203.1| Candida albicans SC5314 phospholipase B4 (CaO19... 40 7.0
29gb|AC147020.2| Mus musculus BAC clone RP23-267A11 from chromosom... 40 7.0
30gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.0
31gb|AC004954.1| Homo sapiens PAC clone RP5-1064B22 from 7, comple... 40 7.0
32gb|AC124680.10| Mus musculus chromosome 14, clone RP23-383A19, c... 40 7.0
33emb|CT005231.3| Pan troglodytes chromosome X clone PTB-024D11 ma... 40 7.0
34emb|AJ567758.2|YLI567758 Yarrowia lipolytica srp72 gene 40 7.0
35gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosom... 40 7.0
36gb|AC084054.12| Mus Musculus Strain C57BL6/J chromosome 5 BAC, R... 40 7.0
37ref|XM_726119.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 7.0
38ref|XM_668741.1| Plasmodium berghei strain ANKA hypothetical pro... 40 7.0
39ref|XM_668842.1| Plasmodium berghei strain ANKA hypothetical pro... 40 7.0
40gb|AF026212.1| Caenorhabditis elegans cosmid F52G3, complete seq... 40 7.0
41gb|AC152347.14| Medicago truncatula clone mth2-28c12, complete s... 40 7.0
42gb|AC135230.8| Medicago truncatula clone mth2-23e14, complete se... 40 7.0
43gb|AC137829.23| Medicago truncatula clone mth2-34j5, complete se... 40 7.0
44emb|AL390199.10| Human DNA sequence from clone RP11-552F24 on ch... 40 7.0
45emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chr... 40 7.0
46emb|AL451044.7| Human DNA sequence from clone RP11-293K19 on chr... 40 7.0
47emb|AL353710.7| Human DNA sequence from clone RP11-470P4 on chro... 40 7.0
48gb|AC084251.13| Homo sapiens chromosome 8, clone RP11-152C15, co... 40 7.0
49gb|AC092933.21| Homo sapiens 3 BAC RP11-200I19 (Roswell Park Can... 40 7.0
50emb|BX927396.13| Zebrafish DNA sequence from clone DKEY-216H18 i... 40 7.0
51emb|CR354557.9| Zebrafish DNA sequence from clone DKEY-34I7 in l... 40 7.0
52emb|Z28068.1|SCYKL068W S.cerevisiae chromosome XI reading frame ... 40 7.0
53emb|Z15035.1|SCNUP100 S.cerevisiae gene for nuclear pore complex... 40 7.0
54emb|X75780.1|SCXI207K S.cerevisiae chromosome XI (20.7 kb) DNA f... 40 7.0
55gb|AC090574.6| Homo sapiens chromosome 8, clone RP11-449M6, comp... 40 7.0
56gb|AC164650.3| Mus musculus BAC clone RP23-47A4 from chromosome ... 40 7.0
57gb|AC151665.26| Medicago truncatula clone mth2-7k4, complete seq... 40 7.0
58gb|AC174354.6| Medicago truncatula clone mth2-8m12, complete seq... 40 7.0
59gb|AC123981.18| Pan troglodytes clone rp43-130h22, complete sequ... 40 7.0
60gb|AC114941.2| Homo sapiens chromosome 5 clone CTD-2287M17, comp... 40 7.0
61gb|AC109474.2| Homo sapiens chromosome 5 clone RP11-414I19, comp... 40 7.0
62gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 7.0
63emb|CR406695.1| Gallus gallus finished cDNA, clone ChEST290o17 40 7.0
64ref|NM_078341.1| Caenorhabditis elegans F52G3.3 (F52G3.3) mRNA, ... 40 7.0
65dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
66gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, comp... 40 7.0
67gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
68emb|BX957237.11| Zebrafish DNA sequence from clone DKEY-22I11 in... 40 7.0
69emb|BX465206.15| Zebrafish DNA sequence from clone DKEYP-25A3 in... 40 7.0
70emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in ... 40 7.0
71dbj|AP000999.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.0
72gb|AE015924.1| Porphyromonas gingivalis W83, complete genome 40 7.0
73gb|AC174764.1| Gasterosteus aculeatus clone VMRC28-119C14, compl... 40 7.0
74gb|AC131683.4| Mus musculus BAC clone RP23-359C21 from 16, compl... 40 7.0
75gb|AC124759.4| Mus musculus BAC clone RP23-132N7 from 1, complet... 40 7.0
76gb|AC113982.8| Mus musculus chromosome 1, clone RP24-78E16, comp... 40 7.0 
>gb|AC111126.16| Mus musculus chromosome 5, clone RP23-336F4, complete sequence
          Length = 236880

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 213    tttttaagctctatcttgtaat 234
              ||||||||||||||||||||||
Sbjct: 189761 tttttaagctctatcttgtaat 189740
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>gb|AC100550.7| Mus musculus chromosome 9, clone RP23-152P11, complete sequence
          Length = 188119

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 86    ttaatttgcatttgattatttt 107
             ||||||||||||||||||||||
Sbjct: 34007 ttaatttgcatttgattatttt 33986
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>emb|AL354896.16| Human DNA sequence from clone RP11-512M17 on chromosome 13, complete
              sequence
          Length = 209743

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 332    aacaagaattcactttcatgatactg 357
              |||||||| |||||||||||||||||
Sbjct: 163810 aacaagaactcactttcatgatactg 163835
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>gb|AC079616.4| Homo sapiens BAC clone RP11-605L5 from 4, complete sequence
          Length = 165913

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 284   tctttttagcaaatcaaggtctcattagat 313
             |||||||||||||||||| |||||| ||||
Sbjct: 24068 tctttttagcaaatcaagatctcataagat 24097
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>gb|AC158558.6| Mus musculus chromosome 5, clone RP23-34P11, complete sequence
          Length = 171035

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 213   tttttaagctctatcttgtaat 234
             ||||||||||||||||||||||
Sbjct: 50254 tttttaagctctatcttgtaat 50233
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>dbj|AP001830.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-315O6, complete
              sequence
          Length = 214483

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 87     taatttgcatttgattattttt 108
              ||||||||||||||||||||||
Sbjct: 198005 taatttgcatttgattattttt 198026
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>emb|AL358892.13| Mouse DNA sequence from clone RP21-417G6 on chromosome 5, complete
              sequence
          Length = 179132

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 213    tttttaagctctatcttgtaat 234
              ||||||||||||||||||||||
Sbjct: 119571 tttttaagctctatcttgtaat 119592
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>gb|AC150774.2| Xenopus tropicalis clone CH216-82E5, complete sequence
          Length = 87104

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 48   attcattttcttgcatatttatttg 72
            |||||||||||||||||||| ||||
Sbjct: 4729 attcattttcttgcatatttttttg 4705
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>gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, complete sequence
          Length = 210968

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 353    tactgttatccttgtgatatg 373
              |||||||||||||||||||||
Sbjct: 136280 tactgttatccttgtgatatg 136300
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>emb|CT025576.8| Mouse DNA sequence from clone RP23-286F8 on chromosome 16, complete
             sequence
          Length = 164971

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 97    ttgattattttttaatcctgg 117
             |||||||||||||||||||||
Sbjct: 35116 ttgattattttttaatcctgg 35136
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>emb|BX571706.24| Zebrafish DNA sequence from clone DKEYP-123H11 in linkage group 11,
             complete sequence
          Length = 196333

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 85    gttaatttgcatttgattatt 105
             |||||||||||||||||||||
Sbjct: 51236 gttaatttgcatttgattatt 51216
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>gb|AC116142.8| Mus musculus chromosome 5, clone RP23-140B23, complete sequence
          Length = 187461

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 353    tactgttatccttgtgatatg 373
              |||||||||||||||||||||
Sbjct: 177083 tactgttatccttgtgatatg 177063
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>gb|AC154836.2| Mus musculus BAC clone RP24-574D17 from chromosome 16, complete sequence
          Length = 150449

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 97     ttgattattttttaatcctgg 117
              |||||||||||||||||||||
Sbjct: 105511 ttgattattttttaatcctgg 105531
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>emb|AL590824.6| Human DNA sequence from clone RP11-486E2 on chromosome 6 Contains a
            citrate synthase (CS) pseudogene, complete sequence
          Length = 54925

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 100  attattttttaatcctggaaa 120
            |||||||||||||||||||||
Sbjct: 7923 attattttttaatcctggaaa 7943
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>emb|AL139379.14| Human DNA sequence from clone RP11-358P11 on chromosome 13 Contains a CpG
              island, complete sequence
          Length = 166237

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 159    ccaagttaatgcatcaccaggaagt 183
              |||||||||||||||||||| ||||
Sbjct: 158131 ccaagttaatgcatcaccagaaagt 158155
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>gb|AC092945.6| Homo sapiens 12 BAC RP11-290O5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 146969

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 271    ataatactgttgatcttttta 291
              |||||||||||||||||||||
Sbjct: 135083 ataatactgttgatcttttta 135103
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>gb|AC079969.5| Homo sapiens chromosome 15, clone RP11-636P14, complete sequence
          Length = 227506

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 261    aaacataaccataatactgtt 281
              |||||||||||||||||||||
Sbjct: 114553 aaacataaccataatactgtt 114533
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>gb|AC008533.9| Homo sapiens chromosome 5 clone CTC-483L24, complete sequence
          Length = 254730

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    actattttaaagaatatgatg 149
              |||||||||||||||||||||
Sbjct: 149257 actattttaaagaatatgatg 149237
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>gb|AC105415.2| Homo sapiens BAC clone RP11-265O12 from 4, complete sequence
          Length = 185848

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 101   ttattttttaatcctggaaac 121
             |||||||||||||||||||||
Sbjct: 52768 ttattttttaatcctggaaac 52788
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>gb|AC160983.2| Mus musculus BAC clone RP23-335A9 from chromosome 9, complete sequence
          Length = 188085

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 52    attttcttgcatatttatttg 72
             |||||||||||||||||||||
Sbjct: 83307 attttcttgcatatttatttg 83327
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>gb|AC011744.8| Homo sapiens BAC clone RP11-324I10 from 4, complete sequence
          Length = 191596

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 101   ttattttttaatcctggaaac 121
             |||||||||||||||||||||
Sbjct: 93863 ttattttttaatcctggaaac 93883
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>gb|AC058803.5| Homo sapiens chromosome 15, clone RP11-717I24, complete sequence
          Length = 203493

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 261   aaacataaccataatactgtt 281
             |||||||||||||||||||||
Sbjct: 28890 aaacataaccataatactgtt 28910
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>tpg|BK000654.1| TPA: TPA_exp: Homo sapiens otopetrin 1 (OTOP1) gene, complete cds
          Length = 38092

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   ttattttttaatcctggaaac 121
             |||||||||||||||||||||
Sbjct: 10287 ttattttttaatcctggaaac 10267
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>gb|AC156942.2| Pan troglodytes BAC clone CH251-541P6 from chromosome unknown, complete
             sequence
          Length = 164196

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   actattttaaagaatatgatg 149
             |||||||||||||||||||||
Sbjct: 86314 actattttaaagaatatgatg 86334
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>dbj|BS000127.1| Pan troglodytes chromosome 22 clone:PTB-099K02, map 22, complete
              sequences
          Length = 191424

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 87     taatttgcatttgattattttttaa 111
              ||||||| |||||||||||||||||
Sbjct: 184424 taatttgaatttgattattttttaa 184400
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>dbj|AB159601.1| Bombyx mori gene for putative transposase yabusame-W, complete cds
          Length = 5411

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 47  tattcattttcttgcatatttattt 71
           ||||||||||||| |||||||||||
Sbjct: 448 tattcattttcttccatatttattt 472
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>ref|XM_419290.1| PREDICTED: Gallus gallus similar to echinoderm microtubule associated
            protein like 5 (LOC421215), mRNA
          Length = 3899

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 432  tgctgtacctccaagatttccctcttatgtca 463
            |||||||||||||| |||| ||||| ||||||
Sbjct: 3436 tgctgtacctccaacatttgcctctgatgtca 3405
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>ref|XM_706203.1| Candida albicans SC5314 phospholipase B4 (CaO19.6594), mRNA
          Length = 1899

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 accaagttaatgcatcacca 177
           ||||||||||||||||||||
Sbjct: 703 accaagttaatgcatcacca 684
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>gb|AC147020.2| Mus musculus BAC clone RP23-267A11 from chromosome 18, complete
             sequence
          Length = 204727

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    tcctattcattttcttgcat 63
             ||||||||||||||||||||
Sbjct: 52181 tcctattcattttcttgcat 52200
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 168     tgcatcaccaggaagttgaa 187
               ||||||||||||||||||||
Sbjct: 5651327 tgcatcaccaggaagttgaa 5651308
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>gb|AC004954.1| Homo sapiens PAC clone RP5-1064B22 from 7, complete sequence
          Length = 86668

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 48   attcattttcttgcatatttattt 71
            |||||||||||||||| |||||||
Sbjct: 7248 attcattttcttgcatttttattt 7225
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>gb|AC124680.10| Mus musculus chromosome 14, clone RP23-383A19, complete sequence
          Length = 202809

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    ggctatttgttagttaattt 92
             ||||||||||||||||||||
Sbjct: 56562 ggctatttgttagttaattt 56581
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>emb|CT005231.3| Pan troglodytes chromosome X clone PTB-024D11 map Xq28, complete
             sequence
          Length = 179396

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   cataatactgttgatctttt 289
             ||||||||||||||||||||
Sbjct: 89657 cataatactgttgatctttt 89638
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>emb|AJ567758.2|YLI567758 Yarrowia lipolytica srp72 gene
          Length = 2444

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 98   tgattattttttaatcctgg 117
            ||||||||||||||||||||
Sbjct: 2404 tgattattttttaatcctgg 2423
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>gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosome 18, complete
             sequence
          Length = 166948

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    tcctattcattttcttgcat 63
             ||||||||||||||||||||
Sbjct: 10899 tcctattcattttcttgcat 10880
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>gb|AC084054.12| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-137N6, complete
              sequence
          Length = 231589

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     cctattcattttcttgcatattta 68
              ||||||||||||| ||||||||||
Sbjct: 116988 cctattcattttcctgcatattta 117011
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>ref|XM_726119.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03220)
           partial mRNA
          Length = 1386

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  ttcattttcttgcatattta 68
           ||||||||||||||||||||
Sbjct: 510 ttcattttcttgcatattta 491
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>ref|XM_668741.1| Plasmodium berghei strain ANKA hypothetical protein (PB000103.01.0)
           partial mRNA
          Length = 789

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  ttcattttcttgcatattta 68
           ||||||||||||||||||||
Sbjct: 510 ttcattttcttgcatattta 491
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>ref|XM_668842.1| Plasmodium berghei strain ANKA hypothetical protein (PB300759.00.0)
           partial mRNA
          Length = 885

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  ttcattttcttgcatattta 68
           ||||||||||||||||||||
Sbjct: 510 ttcattttcttgcatattta 491
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>gb|AF026212.1| Caenorhabditis elegans cosmid F52G3, complete sequence
          Length = 42696

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  aattgtccagaaacaagaat 340
            ||||||||||||||||||||
Sbjct: 9829 aattgtccagaaacaagaat 9848
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>gb|AC152347.14| Medicago truncatula clone mth2-28c12, complete sequence
          Length = 112461

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 49    ttcattttcttgcatatttatttg 72
             |||| |||||||||||||||||||
Sbjct: 64609 ttcaatttcttgcatatttatttg 64632
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>gb|AC135230.8| Medicago truncatula clone mth2-23e14, complete sequence
          Length = 124972

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 46    ctattcattttcttgcata-tttatttg 72
             ||||||||||||||||||| ||||||||
Sbjct: 61835 ctattcattttcttgcatagtttatttg 61808
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>gb|AC137829.23| Medicago truncatula clone mth2-34j5, complete sequence
          Length = 127295

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 46    ctattcattttcttgcata-tttatttg 72
             ||||||||||||||||||| ||||||||
Sbjct: 64648 ctattcattttcttgcatagtttatttg 64675
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>emb|AL390199.10| Human DNA sequence from clone RP11-552F24 on chromosome Xq25-26.1,
             complete sequence
          Length = 69951

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    ctcctattcattttcttgca 62
             ||||||||||||||||||||
Sbjct: 27607 ctcctattcattttcttgca 27588
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>emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chromosome 1, complete
             sequence
          Length = 129844

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    tgcatttgattattttttaa 111
             ||||||||||||||||||||
Sbjct: 92805 tgcatttgattattttttaa 92786
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>emb|AL451044.7| Human DNA sequence from clone RP11-293K19 on chromosome 1 Contains part
             of the DOCK7 gene for dedicator of cytokinesis 7, complete
             sequence
          Length = 127370

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   ataaccataatactgttgat 284
             ||||||||||||||||||||
Sbjct: 25955 ataaccataatactgttgat 25974
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>emb|AL353710.7| Human DNA sequence from clone RP11-470P4 on chromosome 9 Contains a
             novel gene, the 5' end of the CHAC gene for chorea
             acanthocytosis and a CpG island, complete sequence
          Length = 110633

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 331   aaacaagaattcactttcatgata 354
             |||||||| |||||||||||||||
Sbjct: 28430 aaacaagagttcactttcatgata 28453
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>gb|AC084251.13| Homo sapiens chromosome 8, clone RP11-152C15, complete sequence
          Length = 181400

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   ttttcttgcatatttatttg 72
            ||||||||||||||||||||
Sbjct: 7877 ttttcttgcatatttatttg 7896
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>gb|AC092933.21| Homo sapiens 3 BAC RP11-200I19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 137227

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    gcatttgattattttttaat 112
             ||||||||||||||||||||
Sbjct: 65793 gcatttgattattttttaat 65774
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>emb|BX927396.13| Zebrafish DNA sequence from clone DKEY-216H18 in linkage group 9,
              complete sequence
          Length = 115853

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 85     gttaatttgcatttgattattttttaat 112
              |||||||| ||||||||||||| |||||
Sbjct: 101985 gttaatttacatttgattatttattaat 101958
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>emb|CR354557.9| Zebrafish DNA sequence from clone DKEY-34I7 in linkage group 23,
             complete sequence
          Length = 127420

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 47    tattcattttcttgcatatttatt 70
             ||||||||||||||||||| ||||
Sbjct: 15391 tattcattttcttgcatatatatt 15414
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>emb|Z28068.1|SCYKL068W S.cerevisiae chromosome XI reading frame ORF YKL068w
          Length = 6984

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   ttaatttgcatttgattatt 105
            ||||||||||||||||||||
Sbjct: 3306 ttaatttgcatttgattatt 3287
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>emb|Z15035.1|SCNUP100 S.cerevisiae gene for nuclear pore complex protein NUP100 and
            tRNA-His
          Length = 4923

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   ttaatttgcatttgattatt 105
            ||||||||||||||||||||
Sbjct: 1824 ttaatttgcatttgattatt 1805
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>emb|X75780.1|SCXI207K S.cerevisiae chromosome XI (20.7 kb) DNA for Hsp70 homologue (A881),
             nucleoside diphosphate kinase homologue (A153), nuclear
             pore complex protein NUP100 (B959), tRNA-Trp, tRNA-Val,
             tRNA-His, F385, B766, C256, A169, A180, B147
          Length = 20723

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    ttaatttgcatttgattatt 105
             ||||||||||||||||||||
Sbjct: 16035 ttaatttgcatttgattatt 16016
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>gb|AC090574.6| Homo sapiens chromosome 8, clone RP11-449M6, complete sequence
          Length = 172969

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    ttttcttgcatatttatttg 72
             ||||||||||||||||||||
Sbjct: 94675 ttttcttgcatatttatttg 94656
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>gb|AC164650.3| Mus musculus BAC clone RP23-47A4 from chromosome 1, complete sequence
          Length = 200598

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    aactgttggtactattttaa 138
              ||||||||||||||||||||
Sbjct: 181097 aactgttggtactattttaa 181078
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>gb|AC151665.26| Medicago truncatula clone mth2-7k4, complete sequence
          Length = 135880

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    atttgattattttttaatcc 114
             ||||||||||||||||||||
Sbjct: 59279 atttgattattttttaatcc 59260
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>gb|AC174354.6| Medicago truncatula clone mth2-8m12, complete sequence
          Length = 122859

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    atttgattattttttaatcc 114
             ||||||||||||||||||||
Sbjct: 50611 atttgattattttttaatcc 50592
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>gb|AC123981.18| Pan troglodytes clone rp43-130h22, complete sequence
          Length = 172816

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 251   ttctattttcaaacataaccataa 274
             ||||||||||||||| ||||||||
Sbjct: 51792 ttctattttcaaacaaaaccataa 51769
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>gb|AC114941.2| Homo sapiens chromosome 5 clone CTD-2287M17, complete sequence
          Length = 159281

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    ttcaaacataaccataatac 277
              ||||||||||||||||||||
Sbjct: 149654 ttcaaacataaccataatac 149635
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>gb|AC109474.2| Homo sapiens chromosome 5 clone RP11-414I19, complete sequence
          Length = 180650

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     tttgggctatttgttagtta 88
              ||||||||||||||||||||
Sbjct: 165163 tttgggctatttgttagtta 165182
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    ctttcatgatactgttatcc 363
              ||||||||||||||||||||
Sbjct: 851466 ctttcatgatactgttatcc 851447
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>emb|CR406695.1| Gallus gallus finished cDNA, clone ChEST290o17
          Length = 1905

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 432  tgctgtacctccaagatttccctcttatgtca 463
            |||||||||||||| |||| ||||| ||||||
Sbjct: 1442 tgctgtacctccaacatttgcctctgatgtca 1411
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>ref|NM_078341.1| Caenorhabditis elegans F52G3.3 (F52G3.3) mRNA, complete cds
          Length = 2424

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 321  aattgtccagaaacaagaat 340
            ||||||||||||||||||||
Sbjct: 1705 aattgtccagaaacaagaat 1686
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 168     tgcatcaccaggaagttgaa 187
               ||||||||||||||||||||
Sbjct: 5650540 tgcatcaccaggaagttgaa 5650521
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>gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, complete sequence
          Length = 155354

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  ttcaaacataaccataatac 277
            ||||||||||||||||||||
Sbjct: 5629 ttcaaacataaccataatac 5610
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>gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0014O06,
              complete sequence
          Length = 168031

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    tgcatcaccaggaagttgaa 187
              ||||||||||||||||||||
Sbjct: 115026 tgcatcaccaggaagttgaa 115007
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>emb|BX957237.11| Zebrafish DNA sequence from clone DKEY-22I11 in linkage group 19,
             complete sequence
          Length = 73296

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    catttgattattttttaatc 113
             ||||||||||||||||||||
Sbjct: 43489 catttgattattttttaatc 43508
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>emb|BX465206.15| Zebrafish DNA sequence from clone DKEYP-25A3 in linkage group 19,
             complete sequence
          Length = 161014

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    catttgattattttttaatc 113
             ||||||||||||||||||||
Sbjct: 80678 catttgattattttttaatc 80697
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>emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in linkage group 10,
            complete sequence
          Length = 129782

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 211  agtttttaagctctatcttgtaat 234
            ||||||||||||| ||||||||||
Sbjct: 1307 agtttttaagctcaatcttgtaat 1284
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>dbj|AP000999.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-667I23, complete
             sequence
          Length = 189892

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   atgcaaatgtcttggaactt 252
             ||||||||||||||||||||
Sbjct: 77007 atgcaaatgtcttggaactt 77026
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>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 39      gtatctcctattcattttct 58
               ||||||||||||||||||||
Sbjct: 2112248 gtatctcctattcattttct 2112229
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>gb|AC174764.1| Gasterosteus aculeatus clone VMRC28-119C14, complete sequence
          Length = 127803

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    aatttgcatttgattatttt 107
             ||||||||||||||||||||
Sbjct: 59634 aatttgcatttgattatttt 59653
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>gb|AC131683.4| Mus musculus BAC clone RP23-359C21 from 16, complete sequence
          Length = 200615

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    aatttgcatttgattatttt 107
             ||||||||||||||||||||
Sbjct: 16233 aatttgcatttgattatttt 16214
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>gb|AC124759.4| Mus musculus BAC clone RP23-132N7 from 1, complete sequence
          Length = 200104

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    aactgttggtactattttaa 138
              ||||||||||||||||||||
Sbjct: 136102 aactgttggtactattttaa 136083
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>gb|AC113982.8| Mus musculus chromosome 1, clone RP24-78E16, complete sequence
          Length = 206640

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   ttttttaatcctggaaactg 123
             ||||||||||||||||||||
Sbjct: 44582 ttttttaatcctggaaactg 44601


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,162,998
Number of Sequences: 3902068
Number of extensions: 6162998
Number of successful extensions: 134438
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 134167
Number of HSP's gapped (non-prelim): 273
length of query: 515
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 492
effective length of database: 17,143,297,704
effective search space: 8434502470368
effective search space used: 8434502470368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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