ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags20l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GRPE_HAEDU (Q7VMB7) Protein grpE (HSP-70 cofactor) 32 1.5
2Y914_METJA (Q58324) Hypothetical protein MJ0914 32 1.9
3E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78) 32 1.9
4PPARA_RAT (P37230) Peroxisome proliferator-activated receptor al... 30 5.7
5PPARA_MOUSE (P23204) Peroxisome proliferator-activated receptor ... 30 5.7

>GRPE_HAEDU (Q7VMB7) Protein grpE (HSP-70 cofactor)|
          Length = 198

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +1

Query: 385 MELTSEEFLLSCSGFDPKTLGRLSDLIARSLHQDI---PDDDSEQLNQKQIIASGY 543
           +E+T +EF+ + + F  + +G + D+    LHQ I   P ++ E  +  Q++  GY
Sbjct: 127 VEMTHKEFVSTLAKFGIEAIGEIGDVFNPELHQAISMQPAENIEANHLSQVLQKGY 182



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>Y914_METJA (Q58324) Hypothetical protein MJ0914|
          Length = 136

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 169 LIKMTEENGMMIDDGSMFLACDTIINIMSNGKNYPI 276
           + +  ++ GM+IDD  +++AC  II      KNYP+
Sbjct: 86  IYRQLKKRGMLIDDADLYIACTAII------KNYPL 115



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>E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)|
          Length = 866

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 30/127 (23%), Positives = 54/127 (42%)
 Frame = +1

Query: 109  TADGCRTLVSFGGYKAVIDCLIKMTEENGMMIDDGSMFLACDTIINIMSNGKNYPIKMEP 288
            T D    L+  G ++  +  + ++  E  + +DDG+        I   S+  N       
Sbjct: 694  TQDDQLILIKLGFFEVWLTHVARLINEATLTLDDGAYLTRQQLEILYDSDFVN------- 746

Query: 289  CFIRLMQALITWAGTTDASSVIMTAASLCTMVMELTSEEFLLSCSGFDPKTLGRLSDLIA 468
                   AL+ +A T +A  +  T   L + ++ L S+   LS    +PK +GR  +L+A
Sbjct: 747  -------ALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLS----EPKVIGRARELVA 795

Query: 469  RSLHQDI 489
             +L   I
Sbjct: 796  EALRVQI 802



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>PPARA_RAT (P37230) Peroxisome proliferator-activated receptor alpha|
           (PPAR-alpha)
          Length = 468

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 23/83 (27%), Positives = 41/83 (49%)
 Frame = +1

Query: 127 TLVSFGGYKAVIDCLIKMTEENGMMIDDGSMFLACDTIINIMSNGKNYPIKMEPCFIRLM 306
           TL+ +G Y+A+   L  +  ++GM+I  G+ F+  + + N+    K +   MEP F   M
Sbjct: 307 TLLKYGVYEAIFTMLSSLMNKDGMLIAYGNGFITREFLKNLR---KPFCDIMEPKFDFAM 363

Query: 307 QALITWAGTTDASSVIMTAASLC 375
           +        +D S  +  AA +C
Sbjct: 364 KFNALELDDSDIS--LFVAAIIC 384



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>PPARA_MOUSE (P23204) Peroxisome proliferator-activated receptor alpha|
           (PPAR-alpha)
          Length = 468

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 23/83 (27%), Positives = 41/83 (49%)
 Frame = +1

Query: 127 TLVSFGGYKAVIDCLIKMTEENGMMIDDGSMFLACDTIINIMSNGKNYPIKMEPCFIRLM 306
           TL+ +G Y+A+   L  +  ++GM+I  G+ F+  + + N+    K +   MEP F   M
Sbjct: 307 TLLKYGVYEAIFTMLSSLMNKDGMLIAYGNGFITREFLKNLR---KPFCDIMEPKFDFAM 363

Query: 307 QALITWAGTTDASSVIMTAASLC 375
           +        +D S  +  AA +C
Sbjct: 364 KFNALELDDSDIS--LFVAAIIC 384


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,936,366
Number of Sequences: 219361
Number of extensions: 1535421
Number of successful extensions: 3814
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3814
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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