| Clone Name | bags20l05 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | GRPE_HAEDU (Q7VMB7) Protein grpE (HSP-70 cofactor) | 32 | 1.5 | 2 | Y914_METJA (Q58324) Hypothetical protein MJ0914 | 32 | 1.9 | 3 | E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78) | 32 | 1.9 | 4 | PPARA_RAT (P37230) Peroxisome proliferator-activated receptor al... | 30 | 5.7 | 5 | PPARA_MOUSE (P23204) Peroxisome proliferator-activated receptor ... | 30 | 5.7 |
|---|
>GRPE_HAEDU (Q7VMB7) Protein grpE (HSP-70 cofactor)| Length = 198 Score = 32.0 bits (71), Expect = 1.5 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Frame = +1 Query: 385 MELTSEEFLLSCSGFDPKTLGRLSDLIARSLHQDI---PDDDSEQLNQKQIIASGY 543 +E+T +EF+ + + F + +G + D+ LHQ I P ++ E + Q++ GY Sbjct: 127 VEMTHKEFVSTLAKFGIEAIGEIGDVFNPELHQAISMQPAENIEANHLSQVLQKGY 182
>Y914_METJA (Q58324) Hypothetical protein MJ0914| Length = 136 Score = 31.6 bits (70), Expect = 1.9 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +1 Query: 169 LIKMTEENGMMIDDGSMFLACDTIINIMSNGKNYPI 276 + + ++ GM+IDD +++AC II KNYP+ Sbjct: 86 IYRQLKKRGMLIDDADLYIACTAII------KNYPL 115
>E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)| Length = 866 Score = 31.6 bits (70), Expect = 1.9 Identities = 30/127 (23%), Positives = 54/127 (42%) Frame = +1 Query: 109 TADGCRTLVSFGGYKAVIDCLIKMTEENGMMIDDGSMFLACDTIINIMSNGKNYPIKMEP 288 T D L+ G ++ + + ++ E + +DDG+ I S+ N Sbjct: 694 TQDDQLILIKLGFFEVWLTHVARLINEATLTLDDGAYLTRQQLEILYDSDFVN------- 746 Query: 289 CFIRLMQALITWAGTTDASSVIMTAASLCTMVMELTSEEFLLSCSGFDPKTLGRLSDLIA 468 AL+ +A T +A + T L + ++ L S+ LS +PK +GR +L+A Sbjct: 747 -------ALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLS----EPKVIGRARELVA 795 Query: 469 RSLHQDI 489 +L I Sbjct: 796 EALRVQI 802
>PPARA_RAT (P37230) Peroxisome proliferator-activated receptor alpha| (PPAR-alpha) Length = 468 Score = 30.0 bits (66), Expect = 5.7 Identities = 23/83 (27%), Positives = 41/83 (49%) Frame = +1 Query: 127 TLVSFGGYKAVIDCLIKMTEENGMMIDDGSMFLACDTIINIMSNGKNYPIKMEPCFIRLM 306 TL+ +G Y+A+ L + ++GM+I G+ F+ + + N+ K + MEP F M Sbjct: 307 TLLKYGVYEAIFTMLSSLMNKDGMLIAYGNGFITREFLKNLR---KPFCDIMEPKFDFAM 363 Query: 307 QALITWAGTTDASSVIMTAASLC 375 + +D S + AA +C Sbjct: 364 KFNALELDDSDIS--LFVAAIIC 384
>PPARA_MOUSE (P23204) Peroxisome proliferator-activated receptor alpha| (PPAR-alpha) Length = 468 Score = 30.0 bits (66), Expect = 5.7 Identities = 23/83 (27%), Positives = 41/83 (49%) Frame = +1 Query: 127 TLVSFGGYKAVIDCLIKMTEENGMMIDDGSMFLACDTIINIMSNGKNYPIKMEPCFIRLM 306 TL+ +G Y+A+ L + ++GM+I G+ F+ + + N+ K + MEP F M Sbjct: 307 TLLKYGVYEAIFTMLSSLMNKDGMLIAYGNGFITREFLKNLR---KPFCDIMEPKFDFAM 363 Query: 307 QALITWAGTTDASSVIMTAASLC 375 + +D S + AA +C Sbjct: 364 KFNALELDDSDIS--LFVAAIIC 384 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,936,366 Number of Sequences: 219361 Number of extensions: 1535421 Number of successful extensions: 3814 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3737 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3814 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)