ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags20l05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103079.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
2dbj|AK101070.1| Oryza sativa (japonica cultivar-group) cDNA clon... 260 5e-66
3gb|BT017024.1| Zea mays clone EK07D2312E03.c mRNA sequence 111 3e-21
4gb|AY107768.1| Zea mays PCO091730 mRNA sequence 111 3e-21
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
6dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
7ref|XM_750867.1| Aspergillus fumigatus Af293 cell division contr... 44 0.54
8ref|XM_965789.1| PREDICTED: Tribolium castaneum similar to CG171... 44 0.54
9gb|AC154882.11| Mus musculus chromosome 3, clone RP24-187P10, co... 42 2.1
10gb|AC147162.2| Mus musculus BAC clone RP24-270A10 from chromosom... 42 2.1
11gb|AC124450.3| Mus musculus BAC clone RP24-215C4 from chromosome... 42 2.1
12emb|AL840638.9| Zebrafish DNA sequence from clone DKEY-224J12, c... 42 2.1
13gb|AC134429.3| Mus musculus BAC clone RP24-344D20 from chromosom... 40 8.4
14gb|AC119745.2| Homo sapiens 3 BAC RP11-629I15 (Roswell Park Canc... 40 8.4
15gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, comp... 40 8.4
16gb|DQ009478.1| Uncultured marine bacterium clone SPOTSMAY03_890m... 40 8.4
17gb|DQ009461.1| Uncultured marine bacterium clone SPOTSMAY03_500m... 40 8.4
18gb|DQ009429.1| Uncultured marine bacterium clone SPOTSFEB02_70m2... 40 8.4
19gb|AC105515.5| Rattus norvegicus 14 BAC CH230-13H11 (Children's ... 40 8.4
20emb|AL035456.26|HS1099D15 Human DNA sequence from clone RP5-1099... 40 8.4
21emb|Z99110.2|BSUB0007 Bacillus subtilis complete genome (section... 40 8.4
22gb|DQ396247.1| Uncultured organism clone ctg_NISA221 16S ribosom... 40 8.4
23emb|BX322662.12| Zebrafish DNA sequence from clone CH211-222C18 ... 40 8.4
24emb|BX640408.8| Zebrafish DNA sequence from clone CH211-262L3 in... 40 8.4
25emb|CR752647.6| Mouse DNA sequence from clone RP24-115K8 on chro... 40 8.4
26gb|AC067745.7| Homo sapiens chromosome 10 clone RP11-417C21, com... 40 8.4
27gb|AF482951.1| Gossypium hirsutum Acala carbonic anhydrase (CAH2... 40 8.4
28dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 40 8.4
29gb|AC106884.5| Homo sapiens BAC clone RP11-1366O24 from 4, compl... 40 8.4
30gb|AC093568.2| Oryza sativa chromosome 10 clone OSJNBa0029P16, c... 40 8.4
31gb|AC161147.6| Mus musculus BAC clone RP23-357G12 from chromosom... 40 8.4
32gb|DQ300751.1| Uncultured bacterium clone HF770_A12_P1 16S ribos... 40 8.4
33dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
34dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
35dbj|AP003905.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
36gb|AY960279.1| Uncultured Bacteroidetes bacterium isolate DGGE g... 40 8.4
37gb|AC158468.2| Postia placenta clone JGIACWS-5B5, complete sequence 40 8.4
38gb|AF015825.1|AF015825 Bacillus subtilis 168 cotT-rapA region se... 40 8.4
39gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
40gb|AC145910.2| Gallus gallus BAC clone CH261-44O1 from chromosom... 40 8.4
41gb|U90093.1|U90093 Human Chromosome 11 pac pDJ298k13, complete s... 40 8.4 
>dbj|AK103079.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118E17, full
            insert sequence
          Length = 2400

 Score =  268 bits (135), Expect = 2e-68
 Identities = 426/523 (81%)
 Strand = Plus / Plus

                                                                        
Query: 8    gacatctactggagtttatcttttctatcgaaggtcaagatgaatcaagcccgttctatt 67
            ||||||| ||||| |||||||| ||| | ||||| ||||||||||||||| | ||| |||
Sbjct: 1435 gacatctgctggaatttatcttctctgttgaagggcaagatgaatcaagctcattccatt 1494

                                                                        
Query: 68   ctgttcgcttcatgcttccaatgctatcacaaataacgacgacagctgatggatgtagaa 127
            || || | || |||||||| ||||||||||||||||| | |   ||||||||||||||||
Sbjct: 1495 ctatttgttttatgcttcccatgctatcacaaataacaatggaggctgatggatgtagaa 1554

                                                                        
Query: 128  ctttggtgtcatttggaggctataaagcagttatagactgcctcattaaaatgaccgagg 187
             |||||  ||||||||||||||||||   |||||||||||||| |||||||||| |||  
Sbjct: 1555 ttttggcatcatttggaggctataaaatggttatagactgccttattaaaatgatcgaac 1614

                                                                        
Query: 188  agaatggaatgatgatcgacgatggtagcatgtttttggcatgtgatactatcataaaca 247
            |||||||||||||||| |||  ||||| ||||||||| ||||||||||| ||||||||| 
Sbjct: 1615 agaatggaatgatgattgacactggtaacatgtttttagcatgtgataccatcataaact 1674

                                                                        
Query: 248  tcatgtcaaatgggaagaattatcctattaaaatggagccttgtttcatccgcctcatgc 307
            |  ||||||||  ||| |||  || |||| |||||| | |||||||  || ||||  |  
Sbjct: 1675 ttttgtcaaatatgaaaaatgctcatattcaaatggggtcttgttttgtcggccttctaa 1734

                                                                        
Query: 308  aagcacttattacatgggctggaacaacagatgcttcatcagtcatcatgacagcagcca 367
            |||||||| || ||||| |||||||  | |||| ||||||||| ||||| |||||  || 
Sbjct: 1735 aagcacttgtttcatggactggaaccgccgatgattcatcagttatcataacagcctcct 1794

                                                                        
Query: 368  gcttatgcacaatggtgatggagttgacatcagaagagtttctcttgagctgctcaggtt 427
            ||||||||||  ||||| |||| || ||| ||||||||||| | |||||| |||| | ||
Sbjct: 1795 gcttatgcacgttggtgttggacttaacaacagaagagtttttattgagcagctctgatt 1854

                                                                        
Query: 428  ttgaccccaagacccttgggagattgtctgacctcattgccagaagcttgcatcaggata 487
            ||||  ||||||| |||| ||  |||||  | |||||||||||||| ||||||||||  |
Sbjct: 1855 ttgattccaagacacttgagaagttgtcaaagctcattgccagaagtttgcatcagggca 1914

                                                       
Query: 488  tccctgacgacgatagtgaacagcttaaccaaaagcaaatcat 530
            | ||||||||||| |  |||||    |||||||||||||||||
Sbjct: 1915 ttcctgacgacgacatagaacaatccaaccaaaagcaaatcat 1957
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>dbj|AK101070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023P18, full
            insert sequence
          Length = 2471

 Score =  260 bits (131), Expect = 5e-66
 Identities = 425/523 (81%)
 Strand = Plus / Plus

                                                                        
Query: 8    gacatctactggagtttatcttttctatcgaaggtcaagatgaatcaagcccgttctatt 67
            ||||||| ||||| |||||||| ||| | ||||| ||||||||||||||| | ||| |||
Sbjct: 1435 gacatctgctggaatttatcttctctgttgaagggcaagatgaatcaagctcattccatt 1494

                                                                        
Query: 68   ctgttcgcttcatgcttccaatgctatcacaaataacgacgacagctgatggatgtagaa 127
            || || | || |||||||| ||||||||||||||||| | |   ||||||||||||||||
Sbjct: 1495 ctatttgttttatgcttcccatgctatcacaaataacaatggaggctgatggatgtagaa 1554

                                                                        
Query: 128  ctttggtgtcatttggaggctataaagcagttatagactgcctcattaaaatgaccgagg 187
             |||||  ||||||||||||||||||   |||||||||||||| |||||||||| |||  
Sbjct: 1555 ttttggcatcatttggaggctataaaatggttatagactgccttattaaaatgatcgaac 1614

                                                                        
Query: 188  agaatggaatgatgatcgacgatggtagcatgtttttggcatgtgatactatcataaaca 247
            |||||||||||||||| |||  ||||| ||||||||| ||||||||||| ||||||||| 
Sbjct: 1615 agaatggaatgatgattgacactggtaacatgtttttagcatgtgataccatcataaact 1674

                                                                        
Query: 248  tcatgtcaaatgggaagaattatcctattaaaatggagccttgtttcatccgcctcatgc 307
            |  ||||||||  ||| |||  || |||| |||||| | |||||||  || ||||  |  
Sbjct: 1675 ttttgtcaaatatgaaaaatgctcatattcaaatggggtcttgttttgtcggccttctaa 1734

                                                                        
Query: 308  aagcacttattacatgggctggaacaacagatgcttcatcagtcatcatgacagcagcca 367
            |||||||| || ||||| |||||||  | |||| ||||||||| ||||| |||||  || 
Sbjct: 1735 aagcacttgtttcatggactggaaccgccgatgattcatcagttatcataacagcctcct 1794

                                                                        
Query: 368  gcttatgcacaatggtgatggagttgacatcagaagagtttctcttgagctgctcaggtt 427
            ||||||||||  ||||| |||| || ||| |||| |||||| | |||||| |||| | ||
Sbjct: 1795 gcttatgcacgttggtgttggacttaacaacagaggagtttttattgagcagctctgatt 1854

                                                                        
Query: 428  ttgaccccaagacccttgggagattgtctgacctcattgccagaagcttgcatcaggata 487
            ||||  ||||||| |||| ||  |||||  | |||||||||||||| ||||||||||  |
Sbjct: 1855 ttgattccaagacacttgagaagttgtcaaagctcattgccagaagtttgcatcagggca 1914

                                                       
Query: 488  tccctgacgacgatagtgaacagcttaaccaaaagcaaatcat 530
            | ||||||||||| |  |||||    |||||||||||||||||
Sbjct: 1915 ttcctgacgacgacatagaacaatccaaccaaaagcaaatcat 1957
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>gb|BT017024.1| Zea mays clone EK07D2312E03.c mRNA sequence
          Length = 641

 Score =  111 bits (56), Expect = 3e-21
 Identities = 143/172 (83%)
 Strand = Plus / Plus

                                                                       
Query: 392 tgacatcagaagagtttctcttgagctgctcaggttttgaccccaagacccttgggagat 451
           |||| |||||||||||||| |||||||||||   ||||||| |||| | ||||||||| |
Sbjct: 57  tgacgtcagaagagtttctattgagctgctctcattttgacgccaatatccttgggagtt 116

                                                                       
Query: 452 tgtctgacctcattgccagaagcttgcatcaggatatccctgacgacgatagtgaacagc 511
           |||||||  ||||   |||||| ||||| |||||||||| ||| || |||||||| ||  
Sbjct: 117 tgtctgagatcatcatcagaagtttgcagcaggatatccatgatgatgatagtgagcaat 176

                                                               
Query: 512 ttaaccaaaagcaaatcattgcatcaggttataggcgctgggctgatcgatt 563
           | || || ||||| ||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 177 tcaagcagaagcagatcattgtatcaggttataagcgatgggctgatcgatt 228
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>gb|AY107768.1| Zea mays PCO091730 mRNA sequence
          Length = 596

 Score =  111 bits (56), Expect = 3e-21
 Identities = 143/172 (83%)
 Strand = Plus / Plus

                                                                       
Query: 392 tgacatcagaagagtttctcttgagctgctcaggttttgaccccaagacccttgggagat 451
           |||| |||||| ||||||| |||||||||||   ||||||| |||| | ||||||||| |
Sbjct: 48  tgacgtcagaaaagtttctattgagctgctctcattttgacgccaatatccttgggagtt 107

                                                                       
Query: 452 tgtctgacctcattgccagaagcttgcatcaggatatccctgacgacgatagtgaacagc 511
           |||||||  ||||   |||||| ||||| |||||||||||||| || |||||||| ||  
Sbjct: 108 tgtctgagatcatcatcagaagtttgcagcaggatatccctgatgatgatagtgagcaat 167

                                                               
Query: 512 ttaaccaaaagcaaatcattgcatcaggttataggcgctgggctgatcgatt 563
           | || || ||||| ||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 168 tcaagcagaagcagatcattgtatcaggttataagcgatgggctgatcgatt 219
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  101 bits (51), Expect = 3e-18
 Identities = 90/103 (87%)
 Strand = Plus / Plus

                                                                            
Query: 157      gttatagactgcctcattaaaatgaccgaggagaatggaatgatgatcgacgatggtagc 216
                |||||||||||||| |||||||||| |||  |||||||||||||||| |||  ||||| |
Sbjct: 34024194 gttatagactgccttattaaaatgatcgaacagaatggaatgatgattgacactggtaac 34024253

                                                           
Query: 217      atgtttttggcatgtgatactatcataaacatcatgtcaaatg 259
                |||||||| ||||||||||| ||||||||| |  |||||||||
Sbjct: 34024254 atgtttttagcatgtgataccatcataaactttttgtcaaatg 34024296



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 121/148 (81%)
 Strand = Plus / Plus

                                                                            
Query: 337      gatgcttcatcagtcatcatgacagcagccagcttatgcacaatggtgatggagttgaca 396
                |||| ||||||||| ||||| |||||  || ||||||||||  ||||| |||| || |||
Sbjct: 34024704 gatgattcatcagttatcataacagcctcctgcttatgcacgttggtgttggacttaaca 34024763

                                                                            
Query: 397      tcagaagagtttctcttgagctgctcaggttttgaccccaagacccttgggagattgtct 456
                 ||||||||||| | |||||| |||| | ||||||  ||||||| |||| ||  ||||| 
Sbjct: 34024764 acagaagagtttttattgagcagctctgattttgattccaagacacttgagaagttgtca 34024823

                                            
Query: 457      gacctcattgccagaagcttgcatcagg 484
                 | |||||||||||||| ||||||||||
Sbjct: 34024824 aagctcattgccagaagtttgcatcagg 34024851



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                            
Query: 79       atgcttccaatgctatcacaaataacgacgacagctgatggatgtagaactttggtgtca 138
                |||||||| ||||||||||||||||| | |   |||||||||||||||| |||||  |||
Sbjct: 34023887 atgcttcccatgctatcacaaataacaatggaggctgatggatgtagaattttggcatca 34023946

                               
Query: 139      tttggaggctataaa 153
                |||||||||||||||
Sbjct: 34023947 tttggaggctataaa 34023961



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 8        gacatctactggagtttatcttttctatcgaaggtcaagatgaatcaag 56
                ||||||| ||||| |||||||| ||| | ||||| ||||||||||||||
Sbjct: 34023730 gacatctgctggaatttatcttctctgttgaagggcaagatgaatcaag 34023778
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>dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1695_D07
          Length = 110585

 Score =  101 bits (51), Expect = 3e-18
 Identities = 90/103 (87%)
 Strand = Plus / Plus

                                                                         
Query: 157   gttatagactgcctcattaaaatgaccgaggagaatggaatgatgatcgacgatggtagc 216
             |||||||||||||| |||||||||| |||  |||||||||||||||| |||  ||||| |
Sbjct: 51469 gttatagactgccttattaaaatgatcgaacagaatggaatgatgattgacactggtaac 51528

                                                        
Query: 217   atgtttttggcatgtgatactatcataaacatcatgtcaaatg 259
             |||||||| ||||||||||| ||||||||| |  |||||||||
Sbjct: 51529 atgtttttagcatgtgataccatcataaactttttgtcaaatg 51571



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 121/148 (81%)
 Strand = Plus / Plus

                                                                         
Query: 337   gatgcttcatcagtcatcatgacagcagccagcttatgcacaatggtgatggagttgaca 396
             |||| ||||||||| ||||| |||||  || ||||||||||  ||||| |||| || |||
Sbjct: 51979 gatgattcatcagttatcataacagcctcctgcttatgcacgttggtgttggacttaaca 52038

                                                                         
Query: 397   tcagaagagtttctcttgagctgctcaggttttgaccccaagacccttgggagattgtct 456
              ||||||||||| | |||||| |||| | ||||||  ||||||| |||| ||  ||||| 
Sbjct: 52039 acagaagagtttttattgagcagctctgattttgattccaagacacttgagaagttgtca 52098

                                         
Query: 457   gacctcattgccagaagcttgcatcagg 484
              | |||||||||||||| ||||||||||
Sbjct: 52099 aagctcattgccagaagtttgcatcagg 52126



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                         
Query: 79    atgcttccaatgctatcacaaataacgacgacagctgatggatgtagaactttggtgtca 138
             |||||||| ||||||||||||||||| | |   |||||||||||||||| |||||  |||
Sbjct: 51162 atgcttcccatgctatcacaaataacaatggaggctgatggatgtagaattttggcatca 51221

                            
Query: 139   tttggaggctataaa 153
             |||||||||||||||
Sbjct: 51222 tttggaggctataaa 51236



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 8     gacatctactggagtttatcttttctatcgaaggtcaagatgaatcaag 56
             ||||||| ||||| |||||||| ||| | ||||| ||||||||||||||
Sbjct: 51005 gacatctgctggaatttatcttctctgttgaagggcaagatgaatcaag 51053
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>ref|XM_750867.1| Aspergillus fumigatus Af293 cell division control protein Cdc25
            (Afu2g16240) partial mRNA
          Length = 3756

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 294  catccgcctcatgcaagcactt 315
            ||||||||||||||||||||||
Sbjct: 1453 catccgcctcatgcaagcactt 1432
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>ref|XM_965789.1| PREDICTED: Tribolium castaneum similar to CG1718-PA (LOC659485), mRNA
          Length = 5953

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 137  catttggaggctataaagcagttata 162
            ||||||||||| ||||||||||||||
Sbjct: 2598 catttggaggcaataaagcagttata 2623
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>gb|AC154882.11| Mus musculus chromosome 3, clone RP24-187P10, complete sequence
          Length = 175586

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 13    ctactggagtttatcttttct 33
             |||||||||||||||||||||
Sbjct: 71279 ctactggagtttatcttttct 71299
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>gb|AC147162.2| Mus musculus BAC clone RP24-270A10 from chromosome 13, complete
            sequence
          Length = 170563

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 446  ggagattgtctgacctcattg 466
            |||||||||||||||||||||
Sbjct: 9266 ggagattgtctgacctcattg 9286
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>gb|AC124450.3| Mus musculus BAC clone RP24-215C4 from chromosome 13, complete sequence
          Length = 157531

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ggagattgtctgacctcattg 466
             |||||||||||||||||||||
Sbjct: 33258 ggagattgtctgacctcattg 33238
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>emb|AL840638.9| Zebrafish DNA sequence from clone DKEY-224J12, complete sequence
          Length = 177617

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 506  aacagcttaaccaaaagcaaatcat 530
            |||||||||| ||||||||||||||
Sbjct: 8863 aacagcttaatcaaaagcaaatcat 8887
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>gb|AC134429.3| Mus musculus BAC clone RP24-344D20 from chromosome 9, complete sequence
          Length = 180602

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 598    tctgtctgatcttctctgcc 617
              ||||||||||||||||||||
Sbjct: 101191 tctgtctgatcttctctgcc 101172
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>gb|AC119745.2| Homo sapiens 3 BAC RP11-629I15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 74326

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   tttggcatgtgatactatca 241
             ||||||||||||||||||||
Sbjct: 46455 tttggcatgtgatactatca 46436
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>gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, complete sequence
          Length = 256556

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  agactgcctcattaaaatga 181
            ||||||||||||||||||||
Sbjct: 9489 agactgcctcattaaaatga 9470
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>gb|DQ009478.1| Uncultured marine bacterium clone SPOTSMAY03_890m2 16S ribosomal
           RNA gene, partial sequence; 16S-23S ribosomal RNA
           intergenic spacer, complete sequence; and 23S ribosomal
           RNA gene, partial sequence
          Length = 1823

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 tgtcaaatgggaagaattat 270
           ||||||||||||||||||||
Sbjct: 413 tgtcaaatgggaagaattat 432
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>gb|DQ009461.1| Uncultured marine bacterium clone SPOTSMAY03_500m10 16S ribosomal
           RNA gene, partial sequence; 16S-23S ribosomal RNA
           intergenic spacer, complete sequence; and 23S ribosomal
           RNA gene, partial sequence
          Length = 2059

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 tgtcaaatgggaagaattat 270
           ||||||||||||||||||||
Sbjct: 413 tgtcaaatgggaagaattat 432
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>gb|DQ009429.1| Uncultured marine bacterium clone SPOTSFEB02_70m24 16S ribosomal
           RNA gene, partial sequence; 16S-23S ribosomal RNA
           intergenic spacer, complete sequence; and 23S ribosomal
           RNA gene, partial sequence
          Length = 2052

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 tgtcaaatgggaagaattat 270
           ||||||||||||||||||||
Sbjct: 413 tgtcaaatgggaagaattat 432
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>gb|AC105515.5| Rattus norvegicus 14 BAC CH230-13H11 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 221805

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 508    cagcttaaccaaaagcaaat 527
              ||||||||||||||||||||
Sbjct: 122514 cagcttaaccaaaagcaaat 122533
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>emb|AL035456.26|HS1099D15 Human DNA sequence from clone RP5-1099D15 on chromosome 20 Contains the
              3' end of a novel gene, the JAG1 gene encoding Jagged 1
              (involved in Alagille syndrome), a pseudogene aimilar to
              DNAJ protein, a CpG island, ESTs, STSs and GSSs, complete
              sequence
          Length = 125952

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 372    atgcacaatggtgatggagt 391
              ||||||||||||||||||||
Sbjct: 120008 atgcacaatggtgatggagt 119989
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>emb|Z99110.2|BSUB0007 Bacillus subtilis complete genome (section 7 of 21): from 1209742 to
             1410982
          Length = 201241

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   tcagtcatcatgacagcagc 365
             ||||||||||||||||||||
Sbjct: 94585 tcagtcatcatgacagcagc 94566
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>gb|DQ396247.1| Uncultured organism clone ctg_NISA221 16S ribosomal RNA gene,
           partial sequence
          Length = 1518

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 tgtcaaatgggaagaattat 270
           ||||||||||||||||||||
Sbjct: 432 tgtcaaatgggaagaattat 451
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>emb|BX322662.12| Zebrafish DNA sequence from clone CH211-222C18 in linkage group 23,
             complete sequence
          Length = 209409

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   tgggctggaacaacagatgc 341
             ||||||||||||||||||||
Sbjct: 14437 tgggctggaacaacagatgc 14418
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>emb|BX640408.8| Zebrafish DNA sequence from clone CH211-262L3 in linkage group 2,
             complete sequence
          Length = 123471

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    agtttatcttttctatcgaa 39
             ||||||||||||||||||||
Sbjct: 68818 agtttatcttttctatcgaa 68799
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>emb|CR752647.6| Mouse DNA sequence from clone RP24-115K8 on chromosome X, complete
             sequence
          Length = 37067

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   tttttggcatgtgatactat 239
             ||||||||||||||||||||
Sbjct: 25262 tttttggcatgtgatactat 25243
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>gb|AC067745.7| Homo sapiens chromosome 10 clone RP11-417C21, complete sequence
          Length = 156140

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    atcataaacatcatgtcaaa 257
              ||||||||||||||||||||
Sbjct: 150502 atcataaacatcatgtcaaa 150483
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>gb|AF482951.1| Gossypium hirsutum Acala carbonic anhydrase (CAH2) gene, complete
            cds; nuclear gene for plastid product
          Length = 7751

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 512  ttaaccaaaagcaaatcatt 531
            ||||||||||||||||||||
Sbjct: 2507 ttaaccaaaagcaaatcatt 2526
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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 265     aattatcctattaaaatgga 284
               ||||||||||||||||||||
Sbjct: 2253925 aattatcctattaaaatgga 2253944
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>gb|AC106884.5| Homo sapiens BAC clone RP11-1366O24 from 4, complete sequence
          Length = 203424

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   aaatgggaagaattatccta 274
             ||||||||||||||||||||
Sbjct: 93527 aaatgggaagaattatccta 93546
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>gb|AC093568.2| Oryza sativa chromosome 10 clone OSJNBa0029P16, complete sequence
          Length = 173644

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   tgtcatttggaggctataaa 153
             ||||||||||||||||||||
Sbjct: 62078 tgtcatttggaggctataaa 62059
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>gb|AC161147.6| Mus musculus BAC clone RP23-357G12 from chromosome 6, complete sequence
          Length = 225957

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    agactgcctcattaaaatga 181
              ||||||||||||||||||||
Sbjct: 139095 agactgcctcattaaaatga 139114
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>gb|DQ300751.1| Uncultured bacterium clone HF770_A12_P1 16S ribosomal RNA gene,
           partial sequence
          Length = 685

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 tgtcaaatgggaagaattat 270
           ||||||||||||||||||||
Sbjct: 321 tgtcaaatgggaagaattat 340
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 134     tgtcatttggaggctataaa 153
               ||||||||||||||||||||
Sbjct: 5481570 tgtcatttggaggctataaa 5481589
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 243     aaacatcatgtcaaatgggaagaa 266
               ||||||||||||||||| ||||||
Sbjct: 3175909 aaacatcatgtcaaatgtgaagaa 3175932
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>dbj|AP003905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1177_E11
          Length = 92375

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   aaacatcatgtcaaatgggaagaa 266
             ||||||||||||||||| ||||||
Sbjct: 31989 aaacatcatgtcaaatgtgaagaa 32012
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>gb|AY960279.1| Uncultured Bacteroidetes bacterium isolate DGGE gel band LUR4 16S
           ribosomal RNA gene, partial sequence
          Length = 574

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 tgtcaaatgggaagaattat 270
           ||||||||||||||||||||
Sbjct: 97  tgtcaaatgggaagaattat 116
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>gb|AC158468.2| Postia placenta clone JGIACWS-5B5, complete sequence
          Length = 36622

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    tcatgcttccaatgctatca 96
             ||||||||||||||||||||
Sbjct: 12667 tcatgcttccaatgctatca 12648
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>gb|AF015825.1|AF015825 Bacillus subtilis 168 cotT-rapA region sequence
          Length = 35739

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   tcagtcatcatgacagcagc 365
             ||||||||||||||||||||
Sbjct: 24255 tcagtcatcatgacagcagc 24236
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 134     tgtcatttggaggctataaa 153
               ||||||||||||||||||||
Sbjct: 5482357 tgtcatttggaggctataaa 5482376
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>gb|AC145910.2| Gallus gallus BAC clone CH261-44O1 from chromosome unknown, complete
            sequence
          Length = 213878

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 576  aaatgtcgtacatcagcatg 595
            ||||||||||||||||||||
Sbjct: 1393 aaatgtcgtacatcagcatg 1412
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>gb|U90093.1|U90093 Human Chromosome 11 pac pDJ298k13, complete sequence
          Length = 77197

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   tttggcatgtgatactatca 241
             ||||||||||||||||||||
Sbjct: 18843 tttggcatgtgatactatca 18862


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,442,110
Number of Sequences: 3902068
Number of extensions: 5442110
Number of successful extensions: 140507
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140280
Number of HSP's gapped (non-prelim): 219
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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