ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags20k08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA Length = 1061 Score = 739 bits (373), Expect = 0.0 Identities = 430/449 (95%) Strand = Plus / Plus Query: 32 tcccacgccggcgatcagcaccgaggggcgctcctgcgcgaggccatgtcgacgcccgtg 91 ||||| |||||||||||||| || ||| | |||||||| ||||||||||||||||||||| Sbjct: 302 tcccatgccggcgatcagcagcgggggcctctcctgcgtgaggccatgtcgacgcccgtg 361 Query: 92 ctgatggccacagcggaccaggcactggtggaggttgaaggacacttccagctcgtgtca 151 ||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 362 ctgatggtcacagcggagcaggcgctggtggaggttgaaggccacttccagctcgtgtca 421 Query: 152 ggcctcccggttgtcgacagcgcccgccgatgtgtcggggtcgtcgtcaagagcgatcgc 211 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct: 422 ggcctcccggttgtcgacagtgcccgccgatgtgtcggggtcgtcgtcaagagcgatcac 481 Query: 212 gcgagggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatc 271 | |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct: 482 gtgagggcttcacatgggccaaagacgaagattgcagatgtgatgacatctccagcaatc 541 Query: 272 acgctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatc 331 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 542 acgctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaggaagaagatc 601 Query: 332 cacagattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgac 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 602 cacagattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgac 661 Query: 392 gttcttcgcgcgttggaggccatgctgaagttttagaggcgcaggagcccatgcccggta 451 |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 662 gttcttcgcgcgttggaggccatgctgaagttttagagatgcaggagtccatgcccggta 721 Query: 452 cttgtggatctgtaaatatgtgtgtccgc 480 ||||||||||||||||||||||||||||| Sbjct: 722 cttgtggatctgtaaatatgtgtgtccgc 750
>gb|AF498268.1| Haynaldia villosa clone kong28 mRNA Length = 1474 Score = 735 bits (371), Expect = 0.0 Identities = 434/455 (95%) Strand = Plus / Minus Query: 26 ccaccttcccacgccggcgatcagcaccgaggggcgctcctgcgcgaggccatgtcgacg 85 |||||||||||||| | ||||||||| || ||| |||||||||||||||||||||||||| Sbjct: 612 ccaccttcccacgctgccgatcagcagcgggggccgctcctgcgcgaggccatgtcgacg 553 Query: 86 cccgtgctgatggccacagcggaccaggcactggtggaggttgaaggacacttccagctc 145 ||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||| |||||| Sbjct: 552 cccgtgctgatggtcacagcggagcaggcgctggtggaggttgaaggccactttcagctc 493 Query: 146 gtgtcaggcctcccggttgtcgacagcgcccgccgatgtgtcggggtcgtcgtcaagagc 205 ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||| Sbjct: 492 gtgtcaggcctcccggttgtcgacagcgctcgcagatgcgtcggggtcgtcgtgaagagc 433 Query: 206 gatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctcca 265 ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 432 gattgcgcgagggcttcacatgggccaaagacgaagattgcagatgtgatgacatctcca 373 Query: 266 gcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaag 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 372 gcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaag 313 Query: 326 aagatccacagattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgc 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 aagatccacagattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgc 253 Query: 386 gatgacgttcttcgcgcgttggaggccatgctgaagttttagaggcgcaggagcccatgc 445 || ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct: 252 gacgacgttcttcgcgcgttggaggccatgctgaagttttagagatgcaggagtccatgc 193 Query: 446 ccggtacttgtggatctgtaaatatgtgtgtccgc 480 ||||||||||||||||||||||||||||||||||| Sbjct: 192 ccggtacttgtggatctgtaaatatgtgtgtccgc 158
>ref|XM_507550.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 916 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 195 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 254 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 457 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 516 Query: 255 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 314 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 517 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 576 Query: 315 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 374 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 577 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 636 Query: 375 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 637 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 690
>ref|XM_507549.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 1002 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 195 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 254 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 457 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 516 Query: 255 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 314 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 517 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 576 Query: 315 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 374 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 577 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 636 Query: 375 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 637 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 690
>ref|XM_507051.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 956 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 195 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 254 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 463 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 522 Query: 255 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 314 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 523 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 582 Query: 315 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 374 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 583 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 642 Query: 375 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 643 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 696
>ref|XM_468415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 833 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 195 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 254 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 449 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 508 Query: 255 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 314 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 509 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 568 Query: 315 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 374 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 569 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 628 Query: 375 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 629 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 682
>gb|AY346465.1| Oryza sativa (indica cultivar-group) putative brown planthopper susceptibility protein Hd002A mRNA, complete cds Length = 1265 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 195 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 254 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 881 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 940 Query: 255 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 314 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 941 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 1000 Query: 315 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 374 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 1001 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 1060 Query: 375 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 1061 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 1114
>dbj|AK104947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G08, full insert sequence Length = 833 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 195 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 254 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 449 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 508 Query: 255 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 314 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 509 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 568 Query: 315 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 374 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 569 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 628 Query: 375 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 629 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 682
>dbj|AK104525.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H03, full insert sequence Length = 994 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 195 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 254 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 449 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 508 Query: 255 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 314 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 509 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 568 Query: 315 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 374 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 569 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 628 Query: 375 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 629 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 682
>dbj|AK104684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B10, full insert sequence Length = 916 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 195 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 254 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 457 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 516 Query: 255 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 314 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 517 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 576 Query: 315 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 374 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 577 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 636 Query: 375 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 637 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 690
>dbj|AK104103.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B08, full insert sequence Length = 1002 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 195 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 254 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 457 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 516 Query: 255 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 314 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 517 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 576 Query: 315 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 374 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 577 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 636 Query: 375 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 637 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 690
>dbj|AK071580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106O04, full insert sequence Length = 1514 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 195 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 254 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 450 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 509 Query: 255 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 314 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 510 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 569 Query: 315 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 374 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 570 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 629 Query: 375 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 630 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 683
>dbj|AK065134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P24, full insert sequence Length = 955 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 195 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 254 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 462 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 521 Query: 255 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 314 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 522 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 581 Query: 315 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 374 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 582 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 641 Query: 375 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 642 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 695
>gb|AY346466.1| Oryza sativa (indica cultivar-group) brown planthopper-induced resistance protein 1 (Bi1) mRNA, complete cds Length = 1098 Score = 196 bits (99), Expect = 5e-47 Identities = 202/235 (85%), Gaps = 1/235 (0%) Strand = Plus / Plus Query: 195 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 254 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 715 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 774 Query: 255 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 314 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 775 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 834 Query: 315 tgctcaagaagaa-gatccacagattaccgatagtaaaccaggacaatcaagtaataggt 373 |||| |||||||| ||||||||||||||| || ||||| ||||||| ||||| |||||| Sbjct: 835 tgctaaagaagaaggatccacagattaccaattgtaaatcaggacagacaagtgataggt 894 Query: 374 atagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 ||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 895 atagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 949
>gb|AY112171.1| Zea mays CL11049_1 mRNA sequence Length = 803 Score = 196 bits (99), Expect = 5e-47 Identities = 301/370 (81%) Strand = Plus / Plus Query: 58 ggcgctcctgcgcgaggccatgtcgacgcccgtgctgatggccacagcggaccaggcact 117 |||||||||| ||||| ||||||| || ||||||||| |||||||||| |||||| | || Sbjct: 225 ggcgctcctgagcgagaccatgtccacacccgtgctggtggccacagcagaccagaccct 284 Query: 118 ggtggaggttgaaggacacttccagctcgtgtcaggcctcccggttgtcgacagcgcccg 177 || ||| || || | |||||| || |||||| || || ||||| |||||||||| || Sbjct: 285 ggaggacgtcgagtgccacttcgaggccgtgtcggggcttccggtcgtcgacagcggcct 344 Query: 178 ccgatgtgtcggggtcgtcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggac 237 | |||| |||||||| ||||||||| ||| || || || || || |||||||| | ||| Sbjct: 345 cagatgcgtcggggtgatcgtcaagaacgaccgggcaagagcctctcatgggtccaagac 404 Query: 238 gaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataaaacagtgac 297 |||||| | || ||||||||||||||||| ||||| ||||| | || ||||| |||| Sbjct: 405 gaagatatcggaagtgatgacatctccagctatcacactatcgtctgacaaaaccgtgat 464 Query: 298 cgatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccagga 357 ||||| || | ||| ||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 465 ggatgctgctgttctcatgctcaagaagaagatccacagattaccagttgtaaaccagga 524 Query: 358 caatcaagtaataggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgct 417 | |||||||||||||||||||||| ||| |||||||||| |||||| | |||| | Sbjct: 525 cgnnnnngtaataggtatagttacccgcgctgatgttcttcgcgtgttggaaggcatgtt 584 Query: 418 gaagttttag 427 |||| ||||| Sbjct: 585 gaagatttag 594
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 299 gatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccaggac 358 ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 35111716 gatgcggcagctctgatgctaaagaagaagatccacagattaccaattgtaaatcaggac 35111775 Query: 359 aatcaagtaataggt 373 | ||||| |||||| Sbjct: 35111776 agacaagtgataggt 35111790 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 370 aggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 ||||||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 35111919 aggtatagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 35111977 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 229 gtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataa 288 ||||| ||||||||||||||| |||||||| |||||||| ||||| ||| ||| || || Sbjct: 35111556 gtcaaagacgaagattgcagaagtgatgacctctccagccatcactctaccatctgacaa 35111615 Query: 289 aacagt 294 |||||| Sbjct: 35111616 aacagt 35111621
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 299 gatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccaggac 358 ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 7072 gatgcggcagctctgatgctaaagaagaagatccacagattaccaattgtaaatcaggac 7131 Query: 359 aatcaagtaataggt 373 | ||||| |||||| Sbjct: 7132 agacaagtgataggt 7146 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 370 aggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 ||||||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 7275 aggtatagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 7333 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 229 gtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataa 288 ||||| ||||||||||||||| |||||||| |||||||| ||||| ||| ||| || || Sbjct: 6912 gtcaaagacgaagattgcagaagtgatgacctctccagccatcactctaccatctgacaa 6971 Query: 289 aacagt 294 |||||| Sbjct: 6972 aacagt 6977
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 299 gatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccaggac 358 ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 84879 gatgcggcagctctgatgctaaagaagaagatccacagattaccaattgtaaatcaggac 84938 Query: 359 aatcaagtaataggt 373 | ||||| |||||| Sbjct: 84939 agacaagtgataggt 84953 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 370 aggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 ||||||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 85082 aggtatagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 85140 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 229 gtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataa 288 ||||| ||||||||||||||| |||||||| |||||||| ||||| ||| ||| || || Sbjct: 84719 gtcaaagacgaagattgcagaagtgatgacctctccagccatcactctaccatctgacaa 84778 Query: 289 aacagt 294 |||||| Sbjct: 84779 aacagt 84784
>dbj|AK068163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135B04, full insert sequence Length = 4217 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 299 gatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccaggac 358 ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 2474 gatgcggcagctctgatgctaaagaagaagatccacagattaccaattgtaaatcaggac 2415 Query: 359 aatcaagtaataggt 373 | ||||| |||||| Sbjct: 2414 agacaagtgataggt 2400 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 370 aggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 428 ||||||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 2271 aggtatagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 2213 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 229 gtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataa 288 ||||| ||||||||||||||| |||||||| |||||||| ||||| ||| ||| || || Sbjct: 2634 gtcaaagacgaagattgcagaagtgatgacctctccagccatcactctaccatctgacaa 2575 Query: 289 aacagt 294 |||||| Sbjct: 2574 aacagt 2569
>gb|AC130222.4| Mus musculus BAC clone RP23-18K19 from chromosome 12, complete sequence Length = 218608 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 113 gcactggtggaggttgaaggaca 135 ||||||||||||||||||||||| Sbjct: 45589 gcactggtggaggttgaaggaca 45611
>gb|AC122227.4| Mus musculus BAC clone RP23-131H10 from chromosome 12, complete sequence Length = 208332 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 113 gcactggtggaggttgaaggaca 135 ||||||||||||||||||||||| Sbjct: 192989 gcactggtggaggttgaaggaca 193011
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 cacgccggcgatcagcaccg 54 |||||||||||||||||||| Sbjct: 2707445 cacgccggcgatcagcaccg 2707464
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gtcgacagcgcccgccgatg 183 |||||||||||||||||||| Sbjct: 1917145 gtcgacagcgcccgccgatg 1917126
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 agcggaccaggcactggtgg 122 |||||||||||||||||||| Sbjct: 3853643 agcggaccaggcactggtgg 3853662
>ref|XM_841417.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.4760) partial mRNA Length = 3087 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 tcaagaagaagatccacaga 337 |||||||||||||||||||| Sbjct: 1397 tcaagaagaagatccacaga 1378
>emb|AL591793.1|SME591793 Sinorhizobium meliloti 1021 complete chromosome; segment 12/12 Length = 273785 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 cggcgatcagcaccgagggg 59 |||||||||||||||||||| Sbjct: 131898 cggcgatcagcaccgagggg 131917
>gb|AC018738.4| Homo sapiens BAC clone RP11-419H23 from 2, complete sequence Length = 178530 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 agctctgatgctcaagaaga 326 |||||||||||||||||||| Sbjct: 171517 agctctgatgctcaagaaga 171536
>ref|XM_815829.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053504153.290) partial mRNA Length = 1866 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cgctcctgcgcgaggccatg 79 |||||||||||||||||||| Sbjct: 1571 cgctcctgcgcgaggccatg 1590
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 67 gcgcgaggccatgtcgacgcccgtgctg 94 |||||||||||||||| |||| |||||| Sbjct: 2872557 gcgcgaggccatgtcgtcgccagtgctg 2872530
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gtcgacagcgcccgccgatg 183 |||||||||||||||||||| Sbjct: 75856 gtcgacagcgcccgccgatg 75837
>gb|AC073576.23| Homo sapiens 12 BAC RP11-363M20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180309 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tggaggttgaaggacacttc 139 |||||||||||||||||||| Sbjct: 146909 tggaggttgaaggacacttc 146928
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gtcgacagcgcccgccgatg 183 |||||||||||||||||||| Sbjct: 2567252 gtcgacagcgcccgccgatg 2567233
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 cccacgccggcgatcagcac 52 |||||||||||||||||||| Sbjct: 3041393 cccacgccggcgatcagcac 3041412
>gb|AE004451.1| Pseudomonas aeruginosa PAO1, section 12 of 529 of the complete genome Length = 10700 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 385 cgatgacgttcttcgcgcgttggaggcc 412 |||||||||||||||||| ||| ||||| Sbjct: 2200 cgatgacgttcttcgcgccttgcaggcc 2227
>emb|AL355916.2|CNS05TD1 Human chromosome 14 DNA sequence BAC R-47I22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178484 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tggaggttgaaggacacttc 139 |||||||||||||||||||| Sbjct: 135631 tggaggttgaaggacacttc 135650
>dbj|AP002347.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2514A21, complete sequence Length = 130977 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ttgtggatctgtaaatatgt 472 |||||||||||||||||||| Sbjct: 119967 ttgtggatctgtaaatatgt 119986
>dbj|AP000790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736I10, complete sequence Length = 176944 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ttgtggatctgtaaatatgt 472 |||||||||||||||||||| Sbjct: 30103 ttgtggatctgtaaatatgt 30122 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,269,678 Number of Sequences: 3902068 Number of extensions: 3269678 Number of successful extensions: 54945 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54559 Number of HSP's gapped (non-prelim): 384 length of query: 480 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 458 effective length of database: 17,147,199,772 effective search space: 7853417495576 effective search space used: 7853417495576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
