ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags20k05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 307 2e-80
2gb|AY105790.1| Zea mays PCO079761 mRNA sequence 248 2e-62
3ref|NM_187458.1| Oryza sativa (japonica cultivar-group), predic... 232 1e-57
4gb|BT018387.1| Zea mays clone EL01N0313G10.d mRNA sequence 224 3e-55
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 151 3e-33
6gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome... 151 3e-33
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
8gb|BT019263.1| Zea mays clone Contig936.F mRNA sequence 42 2.1
9gb|AC120150.9| Mus musculus chromosome 16, clone RP24-241C15, co... 42 2.1
10emb|AJ224324.1|HVH224324 Hordeum vulgare cv. Haisa mRNA for cp31... 42 2.1
11gb|AC154526.2| Mus musculus BAC clone RP24-69I14 from 16, comple... 42 2.1
12gb|M74566.1|MZENBPAA Zea mays nucleic acid-binding protein (NBP) 42 2.1
13gb|AC116697.7| Mus musculus chromosome 3, clone RP24-444C12, com... 40 8.4
14gb|AC115360.6| Mus musculus BAC clone RP23-191N22 from chromosom... 40 8.4
15emb|AL136131.15| Human DNA sequence from clone RP1-261G23 on chr... 40 8.4
16emb|AL133476.17| Human DNA sequence from clone RP11-156G14 on ch... 40 8.4
17emb|CR383677.15| Zebrafish DNA sequence from clone CH211-157P16 ... 40 8.4
18gb|CP000249.1| Frankia sp. CcI3, complete genome 40 8.4
19dbj|AK031666.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 8.4
20gb|AC068616.5| Homo sapiens BAC clone RP11-580J2 from 2, complet... 40 8.4
21gb|AC154807.2| Mus musculus BAC clone RP23-79E7 from chromosome ... 40 8.4
22emb|BX120013.5| Zebrafish DNA sequence from clone DKEY-76H10, co... 40 8.4
23gb|AC151355.2| Xenopus tropicalis clone ISB-52K19, complete sequ... 40 8.4
24emb|CR385044.5| Zebrafish DNA sequence from clone CH211-51N14 in... 40 8.4
25gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, co... 40 8.4

>dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026M08, full
           insert sequence
          Length = 1438

 Score =  307 bits (155), Expect = 2e-80
 Identities = 355/419 (84%), Gaps = 2/419 (0%)
 Strand = Plus / Plus

                                                                       
Query: 17  agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 76
           ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||| 
Sbjct: 186 agtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggcttatct 245

                                                                       
Query: 77  tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggtgattgat 136
            ||||| | || ||||||||||||||||| || || ||| | ||||||||||| ||||||
Sbjct: 246 gctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggttattgat 305

                                                                       
Query: 137 gcaagtattgtacttgatccatggacaagggaatcacggggatttggatttgttaccatg 196
           || || || |||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 306 gctagcatagtacttgatccatggacaagggaattccggggatttggatttgttaccatg 365

                                                                       
Query: 197 gccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcagtgctggaaggt 256
           || | | |||||||||| || |  |||||||||||||| ||| | |||||| ||||||||
Sbjct: 366 gctactgttaaggaggctgatctttgcatcaaatatctagaccgctcagtgttggaaggt 425

                                                                       
Query: 257 cgtgtcattactgttgagaagattttgttgacagcagca-ggttgatgcccgcagctgta 315
           ||||| || ||||| |||||| ||||||||||||||||| ||| |||| |||  ||||  
Sbjct: 426 cgtgtgataactgtagagaagcttttgttgacagcagcagggtagatgtccgttgctgct 485

                                                                       
Query: 316 tggcatcaaattcaaaagatacacaacctaagatcgaaacaatgctacctcaaccaaagg 375
              | |||||||||||||||  ||||||||| | | |||| |||||||||||||||||||
Sbjct: 486 ctacgtcaaattcaaaagatttacaacctaacagccaaac-atgctacctcaaccaaagg 544

                                                                      
Query: 376 gcaaagagaagacgaggtcgaaccccaacaccgggaaggtaccttggcagcaaatcatc 434
           || ||||||||||| |||||||| ||||| || |||||||| || ||||  ||||||||
Sbjct: 545 gccaagagaagacgtggtcgaacaccaacgcccggaaggtatctaggcacaaaatcatc 603



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                       
Query: 475 agagaccgttacggctcacgctacccgcccgagctagaacgttcttattctccttatcgc 534
           |||||||| ||| | ||||||||| | || |||| |||||| ||||||||||||||| | 
Sbjct: 653 agagaccgctacagttcacgctactcacctgagcgagaacggtcttattctccttatggt 712

                         
Query: 535 agaggacgatcata 548
           ||| | ||||||||
Sbjct: 713 agaaggcgatcata 726



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>gb|AY105790.1| Zea mays PCO079761 mRNA sequence
          Length = 1402

 Score =  248 bits (125), Expect = 2e-62
 Identities = 242/281 (86%)
 Strand = Plus / Plus

                                                                       
Query: 17  agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 76
           ||||| ||||| ||||||| ||| |||||||||||||| || | |||||||||||| || 
Sbjct: 186 agtgtcgactctagtgatgctgaaaaccctgggaacaacctgtatgtgactggtttgtcg 245

                                                                       
Query: 77  tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggtgattgat 136
            ||||| |||| |||||||||||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 246 gctcgtgtaacggatcgagatctggagaagcacttctccactgagggtgaggtgattgat 305

                                                                       
Query: 137 gcaagtattgtacttgatccatggacaagggaatcacggggatttggatttgttaccatg 196
           |||||  ||||   |||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct: 306 gcaagcgttgtgtatgatccttggacaagggaatcacgggggtttggttttgttaccatg 365

                                                                       
Query: 197 gccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcagtgctggaaggt 256
           ||   | |||| || ||||| ||||||||||||||||| ||| |||| ||| || |||||
Sbjct: 366 gctgctgttaaagatgcagatcgctgcatcaaatatctggaccgttctgtgttgcaaggt 425

                                                    
Query: 257 cgtgtcattactgttgagaagattttgttgacagcagcagg 297
           || ||||| ||||||||||||||||||||||||||| ||||
Sbjct: 426 cgggtcataactgttgagaagattttgttgacagcaacagg 466



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                       
Query: 375 ggcaaagagaagacgaggtcgaaccccaacaccgggaaggtaccttggcagcaaatcatc 434
           ||||||||||||||||||| ||||||||||||| || | ||| |||||||  ||||||||
Sbjct: 663 ggcaaagagaagacgaggtagaaccccaacacctgggaagtatcttggcacaaaatcatc 722

                          
Query: 435 gcgtcgaaggaggta 449
            ||| || |||||||
Sbjct: 723 ccgtggacggaggta 737



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>ref|NM_187458.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 975

 Score =  232 bits (117), Expect = 1e-57
 Identities = 225/261 (86%)
 Strand = Plus / Plus

                                                                       
Query: 17  agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 76
           ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||| 
Sbjct: 25  agtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggcttatct 84

                                                                       
Query: 77  tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggtgattgat 136
            ||||| | || ||||||||||||||||| || || ||| | ||||||||||| ||||||
Sbjct: 85  gctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggttattgat 144

                                                                       
Query: 137 gcaagtattgtacttgatccatggacaagggaatcacggggatttggatttgttaccatg 196
           || || || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 145 gctagcatagtacttgatccatggacaagggaatcccggggatttggatttgttaccatg 204

                                                                       
Query: 197 gccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcagtgctggaaggt 256
           || | | |||||||||| || |  |||||||||||||| ||| | |||||| ||||||||
Sbjct: 205 gctactgttaaggaggctgatctttgcatcaaatatctagaccgctcagtgttggaaggt 264

                                
Query: 257 cgtgtcattactgttgagaag 277
           ||||| || ||||| ||||||
Sbjct: 265 cgtgtgataactgtagagaag 285



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                       
Query: 475 agagaccgttacggctcacgctacccgcccgagctagaacgttcttattctccttatcgc 534
           |||||||| ||| | ||||||||| | || |||| |||||| ||||||||||||||| | 
Sbjct: 394 agagaccgctacagttcacgctactcacctgagcgagaacggtcttattctccttatggt 453

                         
Query: 535 agaggacgatcata 548
           ||| | ||||||||
Sbjct: 454 agaaggcgatcata 467



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 379 aagagaagacgaggtcgaaccccaacaccgggaaggtaccttggcagcaaatcatc 434
           ||||||||||| |||||||| ||||| || |||||||| || ||||  ||||||||
Sbjct: 289 aagagaagacgtggtcgaacaccaacgcccggaaggtatctaggcacaaaatcatc 344



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>gb|BT018387.1| Zea mays clone EL01N0313G10.d mRNA sequence
          Length = 1493

 Score =  224 bits (113), Expect = 3e-55
 Identities = 224/261 (85%)
 Strand = Plus / Plus

                                                                       
Query: 17  agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 76
           ||||| ||||| ||||||| ||| |||||||||||||| || | |||||||||||| |||
Sbjct: 188 agtgtcgactctagtgatgctgaaaaccctgggaacaacctgtatgtgactggtttgtca 247

                                                                       
Query: 77  tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggtgattgat 136
            ||||| |||| |||||||||||||||||||| ||||| ||  |||| ||||||||||||
Sbjct: 248 gctcgtgtaacggatcgagatctggagaagcacttctccactaagggtgaggtgattgat 307

                                                                       
Query: 137 gcaagtattgtacttgatccatggacaagggaatcacggggatttggatttgttaccatg 196
           |||||  |||||  |||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct: 308 gcaagcgttgtatatgatccttggacaagggaatcacggggttttggttttgttaccatg 367

                                                                       
Query: 197 gccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcagtgctggaaggt 256
           ||   | |||| || ||||| ||||||||||||||||| ||| |||| ||| || |||||
Sbjct: 368 gctgctgttaaagatgcagatcgctgcatcaaatatctggaccgttctgtgttgcaaggt 427

                                
Query: 257 cgtgtcattactgttgagaag 277
           || ||||| ||||||||||||
Sbjct: 428 cgggtcataactgttgagaag 448



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                       
Query: 375 ggcaaagagaagacgaggtcgaaccccaacaccgggaaggtaccttggcagcaaatcatc 434
           ||||||||||||||| | | ||||||||||||| || | ||| |||||||  ||||||||
Sbjct: 780 ggcaaagagaagacgcgttagaaccccaacacctgggaagtatcttggcacaaaatcatc 839

                          
Query: 435 gcgtcgaaggaggta 449
            ||| || |||||||
Sbjct: 840 ccgtggacggaggta 854



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 274 gaagattttgttgacagcagcagg 297
           ||||||||||||||||||| ||||
Sbjct: 560 gaagattttgttgacagcaacagg 583



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  151 bits (76), Expect = 3e-33
 Identities = 133/152 (87%)
 Strand = Plus / Minus

                                                                           
Query: 126     aggtgattgatgcaagtattgtacttgatccatggacaagggaatcacggggatttggat 185
               |||| |||||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 8741406 aggttattgatgctagcatagtacttgatccatggacaagggaatcccggggatttggat 8741347

                                                                           
Query: 186     ttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcag 245
               ||||||||||||| | | |||||||||| || |  |||||||||||||| ||| | ||||
Sbjct: 8741346 ttgttaccatggctactgttaaggaggctgatctttgcatcaaatatctagaccgctcag 8741287

                                               
Query: 246     tgctggaaggtcgtgtcattactgttgagaag 277
               || ||||||||||||| || ||||| ||||||
Sbjct: 8741286 tgttggaaggtcgtgtgataactgtagagaag 8741255



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                           
Query: 17      agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 76
               ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||| 
Sbjct: 8741586 agtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggcttatct 8741527

                                                                    
Query: 77      tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggt 129
                ||||| | || ||||||||||||||||| || || ||| | |||||||||||
Sbjct: 8741526 gctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggt 8741474



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                       
Query: 321     tcaaattcaaaagatacacaacctaagatcgaaacaatgctacctcaaccaaaggg 376
               |||||||||||||||  ||||||||| | | ||||| |||||||||||||||||||
Sbjct: 8741103 tcaaattcaaaagatttacaacctaacagccaaaca-tgctacctcaaccaaaggg 8741049



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                           
Query: 475     agagaccgttacggctcacgctacccgcccgagctagaacgttcttattctccttatcgc 534
               |||||||| ||| | ||||||||| | || |||| |||||| ||||||||||||||| | 
Sbjct: 8740701 agagaccgctacagttcacgctactcacctgagcgagaacggtcttattctccttatggt 8740642

                             
Query: 535     agaggacgatcata 548
               ||| | ||||||||
Sbjct: 8740641 agaaggcgatcata 8740628



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                       
Query: 379     aagagaagacgaggtcgaaccccaacaccgggaaggtaccttggcagcaaatcatc 434
               ||||||||||| |||||||| ||||| || |||||||| || ||||  ||||||||
Sbjct: 8740929 aagagaagacgtggtcgaacaccaacgcccggaaggtatctaggcacaaaatcatc 8740874



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>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
             complete sequence
          Length = 115270

 Score =  151 bits (76), Expect = 3e-33
 Identities = 133/152 (87%)
 Strand = Plus / Minus

                                                                         
Query: 126   aggtgattgatgcaagtattgtacttgatccatggacaagggaatcacggggatttggat 185
             |||| |||||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 85057 aggttattgatgctagcatagtacttgatccatggacaagggaatcccggggatttggat 84998

                                                                         
Query: 186   ttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcag 245
             ||||||||||||| | | |||||||||| || |  |||||||||||||| ||| | ||||
Sbjct: 84997 ttgttaccatggctactgttaaggaggctgatctttgcatcaaatatctagaccgctcag 84938

                                             
Query: 246   tgctggaaggtcgtgtcattactgttgagaag 277
             || ||||||||||||| || ||||| ||||||
Sbjct: 84937 tgttggaaggtcgtgtgataactgtagagaag 84906



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                         
Query: 17    agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 76
             ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||| 
Sbjct: 85237 agtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggcttatct 85178

                                                                  
Query: 77    tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggt 129
              ||||| | || ||||||||||||||||| || || ||| | |||||||||||
Sbjct: 85177 gctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggt 85125



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                     
Query: 321   tcaaattcaaaagatacacaacctaagatcgaaacaatgctacctcaaccaaaggg 376
             |||||||||||||||  ||||||||| | | ||||| |||||||||||||||||||
Sbjct: 84754 tcaaattcaaaagatttacaacctaacagccaaaca-tgctacctcaaccaaaggg 84700



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                         
Query: 475   agagaccgttacggctcacgctacccgcccgagctagaacgttcttattctccttatcgc 534
             |||||||| ||| | ||||||||| | || |||| |||||| ||||||||||||||| | 
Sbjct: 84352 agagaccgctacagttcacgctactcacctgagcgagaacggtcttattctccttatggt 84293

                           
Query: 535   agaggacgatcata 548
             ||| | ||||||||
Sbjct: 84292 agaaggcgatcata 84279



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 379   aagagaagacgaggtcgaaccccaacaccgggaaggtaccttggcagcaaatcatc 434
             ||||||||||| |||||||| ||||| || |||||||| || ||||  ||||||||
Sbjct: 84580 aagagaagacgtggtcgaacaccaacgcccggaaggtatctaggcacaaaatcatc 84525



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  151 bits (76), Expect = 3e-33
 Identities = 133/152 (87%)
 Strand = Plus / Minus

                                                                           
Query: 126     aggtgattgatgcaagtattgtacttgatccatggacaagggaatcacggggatttggat 185
               |||| |||||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 8739241 aggttattgatgctagcatagtacttgatccatggacaagggaatcccggggatttggat 8739182

                                                                           
Query: 186     ttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcag 245
               ||||||||||||| | | |||||||||| || |  |||||||||||||| ||| | ||||
Sbjct: 8739181 ttgttaccatggctactgttaaggaggctgatctttgcatcaaatatctagaccgctcag 8739122

                                               
Query: 246     tgctggaaggtcgtgtcattactgttgagaag 277
               || ||||||||||||| || ||||| ||||||
Sbjct: 8739121 tgttggaaggtcgtgtgataactgtagagaag 8739090



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                           
Query: 17      agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 76
               ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||| 
Sbjct: 8739421 agtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggcttatct 8739362

                                                                    
Query: 77      tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggt 129
                ||||| | || ||||||||||||||||| || || ||| | |||||||||||
Sbjct: 8739361 gctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggt 8739309



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                       
Query: 321     tcaaattcaaaagatacacaacctaagatcgaaacaatgctacctcaaccaaaggg 376
               |||||||||||||||  ||||||||| | | ||||| |||||||||||||||||||
Sbjct: 8738938 tcaaattcaaaagatttacaacctaacagccaaaca-tgctacctcaaccaaaggg 8738884



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                           
Query: 475     agagaccgttacggctcacgctacccgcccgagctagaacgttcttattctccttatcgc 534
               |||||||| ||| | ||||||||| | || |||| |||||| ||||||||||||||| | 
Sbjct: 8738536 agagaccgctacagttcacgctactcacctgagcgagaacggtcttattctccttatggt 8738477

                             
Query: 535     agaggacgatcata 548
               ||| | ||||||||
Sbjct: 8738476 agaaggcgatcata 8738463



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                       
Query: 379     aagagaagacgaggtcgaaccccaacaccgggaaggtaccttggcagcaaatcatc 434
               ||||||||||| |||||||| ||||| || |||||||| || ||||  ||||||||
Sbjct: 8738764 aagagaagacgtggtcgaacaccaacgcccggaaggtatctaggcacaaaatcatc 8738709



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>gb|BT019263.1| Zea mays clone Contig936.F mRNA sequence
          Length = 1108

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 170 tcacggggatttggatttgttaccatggc 198
           |||||||||||||| |||||||| |||||
Sbjct: 320 tcacggggatttggttttgttactatggc 292



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>gb|AC120150.9| Mus musculus chromosome 16, clone RP24-241C15, complete sequence
          Length = 166172

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 366    caaccaaagggcaaagagaag 386
              |||||||||||||||||||||
Sbjct: 156729 caaccaaagggcaaagagaag 156709



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>emb|AJ224324.1|HVH224324 Hordeum vulgare cv. Haisa mRNA for cp31BHv protein
          Length = 1139

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 176 ggatttggatttgttaccatg 196
           |||||||||||||||||||||
Sbjct: 502 ggatttggatttgttaccatg 522



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>gb|AC154526.2| Mus musculus BAC clone RP24-69I14 from 16, complete sequence
          Length = 219420

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 366    caaccaaagggcaaagagaag 386
              |||||||||||||||||||||
Sbjct: 157678 caaccaaagggcaaagagaag 157698



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>gb|M74566.1|MZENBPAA Zea mays nucleic acid-binding protein (NBP)
          Length = 1251

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 170 tcacggggatttggatttgttaccatggc 198
           |||||||||||||| |||||||| |||||
Sbjct: 898 tcacggggatttggttttgttactatggc 926



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>gb|AC116697.7| Mus musculus chromosome 3, clone RP24-444C12, complete sequence
          Length = 183146

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    tctacagagggagaggtgat 132
              ||||||||||||||||||||
Sbjct: 124873 tctacagagggagaggtgat 124892



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>gb|AC115360.6| Mus musculus BAC clone RP23-191N22 from chromosome 19, complete sequence
          Length = 217325

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 598    atcctactccccctatgaaa 617
              ||||||||||||||||||||
Sbjct: 149635 atcctactccccctatgaaa 149654



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>emb|AL136131.15| Human DNA sequence from clone RP1-261G23 on chromosome 6p12.2-21.1
             Contains the KIAA0110 gene, the FLJ30845 gene, the MRPS18A
             gene for mitochondrial ribosomal protein S18A, a
             pseudogene similar to OPA-interacting protein (OIP21) a
             novel gene, the VEGF gene for vascular endothelial growth
             factor and two CpG islands, complete sequence
          Length = 172033

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    tctctttgtgactggtttat 74
             ||||||||||||||||||||
Sbjct: 67161 tctctttgtgactggtttat 67180



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>emb|AL133476.17| Human DNA sequence from clone RP11-156G14 on chromosome 9p13.1-13.3
             Contains the 3' end of a novel gene, a protein associated
             with PRK1 (AWP1) pseudogene, a novel gene  (KIAA0375), a
             ribosomal protein L36a (L44L, RPL44) (RPL36A) pseudogene, 
             a novel gene, a ribosomal protein S29 (RPS29) pseudogene
             and a CpG island, complete sequence
          Length = 153826

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    tctctttgtgactggtttat 74
             ||||||||||||||||||||
Sbjct: 52867 tctctttgtgactggtttat 52886



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>emb|CR383677.15| Zebrafish DNA sequence from clone CH211-157P16 in linkage group 12,
             complete sequence
          Length = 164387

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 277   gattttgttgacagcagcaggttg 300
             ||||||||||||||| ||||||||
Sbjct: 82604 gattttgttgacagctgcaggttg 82627



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 289     agcagcaggttgatgcccgc 308
               ||||||||||||||||||||
Sbjct: 5366751 agcagcaggttgatgcccgc 5366732



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>dbj|AK031666.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030476O14 product:similar to
            MYOFERLIN (FER-1 LIKE PROTEIN 3) [Homo sapiens], full
            insert sequence
          Length = 3927

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 598  atcctactccccctatgaaa 617
            ||||||||||||||||||||
Sbjct: 3832 atcctactccccctatgaaa 3813



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>gb|AC068616.5| Homo sapiens BAC clone RP11-580J2 from 2, complete sequence
          Length = 152573

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    aaattcaaaagatacacaac 342
              ||||||||||||||||||||
Sbjct: 111741 aaattcaaaagatacacaac 111760



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>gb|AC154807.2| Mus musculus BAC clone RP23-79E7 from chromosome 16, complete sequence
          Length = 256130

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    caaccaaagggcaaagagaa 385
              ||||||||||||||||||||
Sbjct: 165700 caaccaaagggcaaagagaa 165719



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>emb|BX120013.5| Zebrafish DNA sequence from clone DKEY-76H10, complete sequence
          Length = 170264

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 316   tggcatcaaattcaaaagatacac 339
             ||||||||||||||||| ||||||
Sbjct: 23111 tggcatcaaattcaaaacatacac 23088



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>gb|AC151355.2| Xenopus tropicalis clone ISB-52K19, complete sequence
          Length = 55519

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   ccgcagctgtatggcatcaa 324
             ||||||||||||||||||||
Sbjct: 50885 ccgcagctgtatggcatcaa 50904



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>emb|CR385044.5| Zebrafish DNA sequence from clone CH211-51N14 in linkage group 20,
             complete sequence
          Length = 59170

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 277   gattttgttgacagcagcaggttg 300
             ||||||||||||||| ||||||||
Sbjct: 45424 gattttgttgacagctgcaggttg 45401



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>gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, complete sequence
          Length = 209547

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 598    atcctactccccctatgaaa 617
              ||||||||||||||||||||
Sbjct: 150320 atcctactccccctatgaaa 150301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,562,003
Number of Sequences: 3902068
Number of extensions: 4562003
Number of successful extensions: 80758
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80626
Number of HSP's gapped (non-prelim): 128
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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