ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags20i17 |
|---|---|
| Clone Library Name | barley_pub |
>APHC_MOUSE (Q9D099) Alkaline phytoceramidase (EC 3.5.1.-) (aPHC) (Alkaline| ceramidase) Length = 267 Score = 92.0 bits (227), Expect = 9e-19 Identities = 37/99 (37%), Positives = 65/99 (65%) Frame = +2 Query: 185 FWGPVTSTTELCEENYARSSYIAEFYNTLSNAPCILLALIGLVNALRQRFEKRFSVLHIS 364 +WGP TST + CEENY + ++AEF+NT+SN I+ + G + +R R EKR+ +++ Sbjct: 10 YWGPTTSTLDWCEENYVVTLFVAEFWNTVSNLIMIIPPIFGAIQGIRDRLEKRYIAAYLA 69 Query: 365 NMILSIGSIIFHATLQHVLQQSDETPMVWEILLYLYVLY 481 ++ +GS FH TL++ +Q DE PM++ +++Y ++ Sbjct: 70 LTVVGMGSWCFHMTLKYEMQLLDELPMIYSCCIFVYCMF 108
>APHC_HUMAN (Q9NUN7) Alkaline phytoceramidase (EC 3.5.1.-) (aPHC) (Alkaline| ceramidase) (Alkaline dihydroceramidase SB89) Length = 267 Score = 90.9 bits (224), Expect = 2e-18 Identities = 38/99 (38%), Positives = 66/99 (66%) Frame = +2 Query: 185 FWGPVTSTTELCEENYARSSYIAEFYNTLSNAPCILLALIGLVNALRQRFEKRFSVLHIS 364 +WGP TST + CEENY+ + YIAEF+NT+SN I+ + G + ++R EKR+ +++ Sbjct: 10 YWGPTTSTLDWCEENYSVTWYIAEFWNTVSNLIMIIPPMFGAIQSVRDGLEKRYIASYLA 69 Query: 365 NMILSIGSIIFHATLQHVLQQSDETPMVWEILLYLYVLY 481 ++ +GS FH TL++ +Q DE PM++ +++Y ++ Sbjct: 70 LTVVGMGSWCFHMTLKYEMQLLDELPMIYSCCIFVYCMF 108
>YPC1_YEAST (P38298) Alkaline ceramidase YPC1 (EC 3.5.1.-)| Length = 316 Score = 82.8 bits (203), Expect = 5e-16 Identities = 43/109 (39%), Positives = 62/109 (56%) Frame = +2 Query: 167 DSMVASFWGPVTSTTELCEENYARSSYIAEFYNTLSNAPCILLALIGLVNALRQRFEKRF 346 +S V WG TST + CEENY S YIAE+ NTL+N+ IL A+ +A + + EKRF Sbjct: 10 ESSVPGVWGETTSTIDWCEENYVVSPYIAEWSNTLTNSVFILSAIYTTYSAYKNKLEKRF 69 Query: 347 SVLHISNMILSIGSIIFHATLQHVLQQSDETPMVWEILLYLYVLYSPDW 493 ++ ++ +GS +FH TL++ Q DE PM+ Y + P W Sbjct: 70 LLIGFGYGLVGVGSWLFHMTLKYRFQLLDELPMI-------YAMCIPTW 111
>YDC1_YEAST (Q02896) Alkaline ceramidase YDC1 (EC 3.5.1.-)| Length = 317 Score = 76.6 bits (187), Expect = 4e-14 Identities = 39/109 (35%), Positives = 60/109 (55%) Frame = +2 Query: 167 DSMVASFWGPVTSTTELCEENYARSSYIAEFYNTLSNAPCILLALIGLVNALRQRFEKRF 346 ++ + +WG TS + CEENY S YIAE+ NT++N+ ++ A +A R + E R+ Sbjct: 9 EAPIEGYWGKPTSLIDWCEENYVVSPYIAEWSNTITNSIFLMTAFYSTYSAWRNKLETRY 68 Query: 347 SVLHISNMILSIGSIIFHATLQHVLQQSDETPMVWEILLYLYVLYSPDW 493 ++ + ++ IGS +FH TLQ+ Q DE PM LY P W Sbjct: 69 ILIGMGFSLVGIGSWLFHMTLQYRYQLLDELPM-------LYATIIPSW 110
>5HT3R_HUMAN (P46098) 5-hydroxytryptamine 3 receptor precursor (5-HT-3)| (Serotonin-gated ion channel receptor) (5-HT3R) Length = 478 Score = 32.0 bits (71), Expect = 1.0 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%) Frame = +2 Query: 293 LALIGLV---NALRQRFEKRFSVLHISNMILSIGSI----IFHATLQHVLQQSDETPMVW 451 LA+ GL+ +++RQ EKR + ++ L +GS+ +FH L VL S M+W Sbjct: 413 LAVCGLLQELSSIRQFLEKRDEIREVARDWLRVGSVLDKLLFHIYLLAVLAYSITLVMLW 472 Query: 452 EILLY 466 I Y Sbjct: 473 SIWQY 477
>GCP_HELPJ (Q9ZJ27) Probable O-sialoglycoprotein endopeptidase (EC 3.4.24.57)| (Glycoprotease) Length = 340 Score = 31.2 bits (69), Expect = 1.8 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 12/107 (11%) Frame = +2 Query: 146 IMADSMADSMVASF------------WGPVTSTTELCEENYARSSYIAEFYNTLSNAPCI 289 I+A S+ DS SF GP+ L +YA + F L N+P + Sbjct: 153 IVATSLDDSFGESFDKVSKMLDLGYPGGPIVEKLAL---DYAHPNEPLMFPIPLKNSPNL 209 Query: 290 LLALIGLVNALRQRFEKRFSVLHISNMILSIGSIIFHATLQHVLQQS 430 + GL NA+R EK L+ + IG A ++H++QQ+ Sbjct: 210 AFSFSGLKNAVRLEVEKNAHNLN-DEVKQKIGYHFQSAAIEHLIQQT 255
>PME1_RALSO (P58601) Pectinesterase precursor (EC 3.1.1.11) (Pectin| methylesterase) (PE) Length = 396 Score = 30.4 bits (67), Expect = 3.0 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = +2 Query: 122 GNAPNQETIMADSMADSMV--ASFWGPVTSTTELCEENYARS-SYIAEFYNT 268 G++PN + ++ DS +++ A WGP T+ C N A S + E+ NT Sbjct: 339 GSSPNGQVVIRDSSLGALIRLADPWGPSTAGRPYCSANCAYSANRFFEYNNT 390
>LEP4_HAEIN (P44620) Putative type 4 prepilin-like protein specific leader| peptidase (EC 3.4.23.43) Length = 230 Score = 30.4 bits (67), Expect = 3.0 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = +2 Query: 242 SYIAEFYNTLSNAPCILLALIGLVNALRQRFEKRFSVLHISNMILSIGS--IIFH 400 SY+ Y +S PC+ L +GL A + FS+L +S I S S I+F+ Sbjct: 100 SYLDWHYQLISTTPCLWLLTLGLFGA-----DNNFSLLTLSESIKSAASFFIVFY 149
>CDX1_HUMAN (P47902) Homeobox protein CDX-1 (Caudal-type homeobox protein 1)| Length = 265 Score = 30.0 bits (66), Expect = 4.0 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = +3 Query: 30 PPHPQDRRARPAPPEVFGLVPSNTAL 107 PP D A PA P + GL PSNT+L Sbjct: 225 PPMAHDITATPAGPSLGGLCPSNTSL 250
>FCY22_YEAST (Q12119) Purine-cytosine permease FCY22 (PCP FCY22)| (Cytosine/purine transport protein FCY22) (Fluorocytosine resistance protein 22) Length = 530 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = +2 Query: 227 NYARSSYIAEFYNTLSNAPCILLALIGLVNALRQRFEKRFSVLHISNMILSIGSII 394 N+ +S + F+N L P L +L G+ LRQ R+ +I+ S+ ++I Sbjct: 114 NFGQSVLVIIFFNILGLIPVALFSLFGVELGLRQMILSRYLAGNITARFFSLVNVI 169
>PYRC_STAAW (P65907) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 424 Score = 29.6 bits (65), Expect = 5.2 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +3 Query: 33 PHPQDRRARPAPPEVFGLVPSNTALRNSLLVTHPTK 140 PH +D +A+P FG+V S TA LL TH K Sbjct: 306 PHARDEKAQPMEKAPFGIVGSETAF--PLLYTHFVK 339
>PYRC_STAAS (Q6GA12) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 424 Score = 29.6 bits (65), Expect = 5.2 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +3 Query: 33 PHPQDRRARPAPPEVFGLVPSNTALRNSLLVTHPTK 140 PH +D +A+P FG+V S TA LL TH K Sbjct: 306 PHARDEKAQPMEKAPFGIVGSETAF--PLLYTHFVK 339
>PYRC_STAAR (Q6GHN4) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 424 Score = 29.6 bits (65), Expect = 5.2 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +3 Query: 33 PHPQDRRARPAPPEVFGLVPSNTALRNSLLVTHPTK 140 PH +D +A+P FG+V S TA LL TH K Sbjct: 306 PHARDEKAQPMEKAPFGIVGSETAF--PLLYTHFVK 339
>PYRC_STAAN (P65906) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 424 Score = 29.6 bits (65), Expect = 5.2 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +3 Query: 33 PHPQDRRARPAPPEVFGLVPSNTALRNSLLVTHPTK 140 PH +D +A+P FG+V S TA LL TH K Sbjct: 306 PHARDEKAQPMEKAPFGIVGSETAF--PLLYTHFVK 339
>PYRC_STAAM (P65905) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 424 Score = 29.6 bits (65), Expect = 5.2 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +3 Query: 33 PHPQDRRARPAPPEVFGLVPSNTALRNSLLVTHPTK 140 PH +D +A+P FG+V S TA LL TH K Sbjct: 306 PHARDEKAQPMEKAPFGIVGSETAF--PLLYTHFVK 339
>PYRC_STAAC (Q5HGN1) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 424 Score = 29.6 bits (65), Expect = 5.2 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +3 Query: 33 PHPQDRRARPAPPEVFGLVPSNTALRNSLLVTHPTK 140 PH +D +A+P FG+V S TA LL TH K Sbjct: 306 PHARDEKAQPMEKAPFGIVGSETAF--PLLYTHFVK 339
>CAND1_PONPY (Q5R6L5) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 29.6 bits (65), Expect = 5.2 Identities = 13/49 (26%), Positives = 30/49 (61%) Frame = +2 Query: 281 PCILLALIGLVNALRQRFEKRFSVLHISNMILSIGSIIFHATLQHVLQQ 427 P IL L+ + + R KR +++ + ++++S G+I+F ++H+L + Sbjct: 174 PSILTCLLPQLTSPRLAVRKR-TIIALGHLVMSCGNIVFVGLIEHLLSE 221
>TAGAP_HUMAN (Q8N103) T-cell activation Rho GTPase-activating protein (T-cell| activation GTPase-activating protein) Length = 731 Score = 29.6 bits (65), Expect = 5.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +1 Query: 295 GAYWTRECSPPAFREALQRPA 357 GA W R SPP++ EA+Q PA Sbjct: 584 GADWERPGSPPSYEEAMQGPA 604
>POLN_EEVVT (P27282) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2492 Score = 29.6 bits (65), Expect = 5.2 Identities = 17/44 (38%), Positives = 20/44 (45%) Frame = +3 Query: 3 P*SRTARHSPPHPQDRRARPAPPEVFGLVPSNTALRNSLLVTHP 134 P RT +PPHP R P+ L PS R SL+ T P Sbjct: 1789 PAPRTVFRNPPHPAPRTRTPS------LAPSRACSRTSLVSTPP 1826
>DCRA_DESVH (P35841) Chemoreceptor protein A| Length = 669 Score = 29.6 bits (65), Expect = 5.2 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 9/57 (15%) Frame = -3 Query: 391 DTPNGKYHIGYVQDAEALLET---------LAESIHESNKRQKNAGCIRESIVELRD 248 D NG+ G + A + ET LAES+HE +R N G + E I E+ D Sbjct: 455 DLANGEAQSGGTEMANTVRETRQVAQRTEDLAESLHELARRADNIGRVIEVINEIAD 511
>YNV5_CAEEL (P34568) Hypothetical protein T16H12.5| Length = 451 Score = 29.3 bits (64), Expect = 6.8 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 9/48 (18%) Frame = +2 Query: 356 HISNMILSIGSIIFHATLQHVLQQSD---------ETPMVWEILLYLY 472 HI IL+ S +F A +H +Q+SD E ++ E+L+Y+Y Sbjct: 283 HIHKAILAARSRVFSAMFEHHMQESDTNMTTVDDIEPEVMRELLVYMY 330
>DAPA1_WHEAT (P24846) Dihydrodipicolinate synthase 1, chloroplast precursor (EC| 4.2.1.52) (DHDPS 1) Length = 388 Score = 29.3 bits (64), Expect = 6.8 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 24 HSPPHPQDRRARPAPPEVFGLVPSNTA 104 H PHP R +R +PP F P+ T+ Sbjct: 10 HPHPHPTSRLSRASPPSPFPFFPAGTS 36
>PYRC_STAES (Q8CPJ6) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 425 Score = 28.9 bits (63), Expect = 8.9 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +3 Query: 33 PHPQDRRARPAPPEVFGLVPSNTALRNSLLVTHPTKR 143 PH ++ +A+P FG+V S TA LL TH +R Sbjct: 307 PHAKEEKAQPMTKAPFGIVGSETAF--PLLYTHFVRR 341
>ARP6_ASHGO (Q74ZV8) Actin-like protein ARP6| Length = 410 Score = 28.9 bits (63), Expect = 8.9 Identities = 20/95 (21%), Positives = 40/95 (42%) Frame = +2 Query: 140 ETIMADSMADSMVASFWGPVTSTTELCEENYARSSYIAEFYNTLSNAPCILLALIGLVNA 319 ETI+ +++ + F PV+ + R YI + T +LIG V Sbjct: 216 ETILINNIKEQ--CCFMPPVSYFDSFQRKEETRVEYILPDFQT---------SLIGYVRQ 264 Query: 320 LRQRFEKRFSVLHISNMILSIGSIIFHATLQHVLQ 424 +Q K +L + + + ++ FH + ++L+ Sbjct: 265 PKQAIPKTSQILRLEDELFTVPETFFHPEISNILK 299
>CAND1_RAT (P97536) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/49 (26%), Positives = 30/49 (61%) Frame = +2 Query: 281 PCILLALIGLVNALRQRFEKRFSVLHISNMILSIGSIIFHATLQHVLQQ 427 P IL L+ + + R KR +++ + ++++S G+I+F ++H+L + Sbjct: 174 PSILTCLLPQLTSPRLAVRKR-TIIALGHLVMSCGNIVFVDLIEHLLSE 221
>CAND1_MOUSE (Q6ZQ38) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/49 (26%), Positives = 30/49 (61%) Frame = +2 Query: 281 PCILLALIGLVNALRQRFEKRFSVLHISNMILSIGSIIFHATLQHVLQQ 427 P IL L+ + + R KR +++ + ++++S G+I+F ++H+L + Sbjct: 174 PSILTCLLPQLTSPRLAVRKR-TIIALGHLVMSCGNIVFVDLIEHLLSE 221
>CAND1_HUMAN (Q86VP6) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/49 (26%), Positives = 30/49 (61%) Frame = +2 Query: 281 PCILLALIGLVNALRQRFEKRFSVLHISNMILSIGSIIFHATLQHVLQQ 427 P IL L+ + + R KR +++ + ++++S G+I+F ++H+L + Sbjct: 174 PSILTCLLPQLTSPRLAVRKR-TIIALGHLVMSCGNIVFVDLIEHLLSE 221
>CCNB3_HUMAN (Q8WWL7) G2/mitotic-specific cyclin-B3| Length = 1395 Score = 28.9 bits (63), Expect = 8.9 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Frame = +2 Query: 215 LCEENYARSSYIAEFYNTLSNAPCILLALIGLVNALRQRFEKRFS-VLHISNMILSIGSI 391 +C++NY RS ++ N L+ C + I F +R++ +H + L++ Sbjct: 1231 ICDDNYQRSEVLSMEINILNVLKCDINIPIA------YHFLRRYARCIHTNMKTLTLSRY 1284 Query: 392 IFHATLQ--HVLQQSDETPMVWEILLYLYV 475 I TLQ H +Q+ +LL LY+ Sbjct: 1285 ICEMTLQEYHYVQEKASKLAAASLLLALYM 1314 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,082,358 Number of Sequences: 219361 Number of extensions: 1472031 Number of successful extensions: 4226 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 4014 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4218 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
