| Clone Name | bags20i17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469393.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1344 Score = 333 bits (168), Expect = 3e-88 Identities = 312/360 (86%) Strand = Plus / Plus Query: 160 catggcggattcgatggtggcgagcttctgggggcctgttacgtcaacaactgagctgtg 219 |||||||||||| |||||| | || ||||||||||||||||| |||||||||||||| || Sbjct: 200 catggcggattctatggtgtcaagtttctgggggcctgttacttcaacaactgagctctg 259 Query: 220 cgaggagaactatgcgcgctcgtcatatatcgcggagttctacaatactctctctaatgc 279 |||||| || ||||| | |||||||||||| || || |||||||||||| | ||||||| Sbjct: 260 cgaggaaaattatgcacactcgtcatatattgcagaattctacaatactgtttctaatgt 319 Query: 280 accctgcattcttttggcgcttattggactcgtgaatgctctccgccagcgtttcgagaa 339 || || ||||| |||| ||| ||||||| ||||||||||| ||||| |||| ||||| Sbjct: 320 tccatgtgttcttctggcacttgttggacttgtgaatgctcttcgccaaggttttgagaa 379 Query: 340 gcgcttcagcgtcctgcacatatccaatatgatactttccattgggagtatcatcttcca 399 || ||||| ||||||||||||||||||||||||||| | || || ||||| |||||||| Sbjct: 380 acgattcagtgtcctgcacatatccaatatgatacttgctatcggcagtatgatcttcca 439 Query: 400 tgcaaccttgcaacatgtcttacagcagagtgatgagactccaatggtgtgggaaatcct 459 ||| ||||| || || || ||||||||||| ||||||||||||||||||||||| || || Sbjct: 440 tgccaccttacagcacgttttacagcagagcgatgagactccaatggtgtgggagattct 499 Query: 460 cctatatctgtatgtcctttattcaccagactggcattacaggagcaccatgcctacttt 519 ||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 500 cctatatctttatgtactttattcaccagactggcattaccggagcactatgcctacttt 559
>dbj|AK103953.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-G02, full insert sequence Length = 1313 Score = 333 bits (168), Expect = 3e-88 Identities = 312/360 (86%) Strand = Plus / Plus Query: 160 catggcggattcgatggtggcgagcttctgggggcctgttacgtcaacaactgagctgtg 219 |||||||||||| |||||| | || ||||||||||||||||| |||||||||||||| || Sbjct: 196 catggcggattctatggtgtcaagtttctgggggcctgttacttcaacaactgagctctg 255 Query: 220 cgaggagaactatgcgcgctcgtcatatatcgcggagttctacaatactctctctaatgc 279 |||||| || ||||| | |||||||||||| || || |||||||||||| | ||||||| Sbjct: 256 cgaggaaaattatgcacactcgtcatatattgcagaattctacaatactgtttctaatgt 315 Query: 280 accctgcattcttttggcgcttattggactcgtgaatgctctccgccagcgtttcgagaa 339 || || ||||| |||| ||| ||||||| ||||||||||| ||||| |||| ||||| Sbjct: 316 tccatgtgttcttctggcacttgttggacttgtgaatgctcttcgccaaggttttgagaa 375 Query: 340 gcgcttcagcgtcctgcacatatccaatatgatactttccattgggagtatcatcttcca 399 || ||||| ||||||||||||||||||||||||||| | || || ||||| |||||||| Sbjct: 376 acgattcagtgtcctgcacatatccaatatgatacttgctatcggcagtatgatcttcca 435 Query: 400 tgcaaccttgcaacatgtcttacagcagagtgatgagactccaatggtgtgggaaatcct 459 ||| ||||| || || || ||||||||||| ||||||||||||||||||||||| || || Sbjct: 436 tgccaccttacagcacgttttacagcagagcgatgagactccaatggtgtgggagattct 495 Query: 460 cctatatctgtatgtcctttattcaccagactggcattacaggagcaccatgcctacttt 519 ||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 496 cctatatctttatgtactttattcaccagactggcattaccggagcactatgcctacttt 555
>dbj|AK073303.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024P22, full insert sequence Length = 1335 Score = 333 bits (168), Expect = 3e-88 Identities = 312/360 (86%) Strand = Plus / Plus Query: 160 catggcggattcgatggtggcgagcttctgggggcctgttacgtcaacaactgagctgtg 219 |||||||||||| |||||| | || ||||||||||||||||| |||||||||||||| || Sbjct: 218 catggcggattctatggtgtcaagtttctgggggcctgttacttcaacaactgagctctg 277 Query: 220 cgaggagaactatgcgcgctcgtcatatatcgcggagttctacaatactctctctaatgc 279 |||||| || ||||| | |||||||||||| || || |||||||||||| | ||||||| Sbjct: 278 cgaggaaaattatgcacactcgtcatatattgcagaattctacaatactgtttctaatgt 337 Query: 280 accctgcattcttttggcgcttattggactcgtgaatgctctccgccagcgtttcgagaa 339 || || ||||| |||| ||| ||||||| ||||||||||| ||||| |||| ||||| Sbjct: 338 tccatgtgttcttctggcacttgttggacttgtgaatgctcttcgccaaggttttgagaa 397 Query: 340 gcgcttcagcgtcctgcacatatccaatatgatactttccattgggagtatcatcttcca 399 || ||||| ||||||||||||||||||||||||||| | || || ||||| |||||||| Sbjct: 398 acgattcagtgtcctgcacatatccaatatgatacttgctatcggcagtatgatcttcca 457 Query: 400 tgcaaccttgcaacatgtcttacagcagagtgatgagactccaatggtgtgggaaatcct 459 ||| ||||| || || || ||||||||||| ||||||||||||||||||||||| || || Sbjct: 458 tgccaccttacagcacgttttacagcagagcgatgagactccaatggtgtgggagattct 517 Query: 460 cctatatctgtatgtcctttattcaccagactggcattacaggagcaccatgcctacttt 519 ||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 518 cctatatctttatgtactttattcaccagactggcattaccggagcactatgcctacttt 577
>gb|AY112537.1| Zea mays CL17574_1 mRNA sequence Length = 535 Score = 222 bits (112), Expect = 9e-55 Identities = 251/299 (83%) Strand = Plus / Plus Query: 161 atggcggattcgatggtggcgagcttctgggggcctgttacgtcaacaactgagctgtgc 220 ||||| ||||| ||||| || ||||||| ||||| || ||||| |||||| ||||| Sbjct: 209 atggcagattcaatggtagcaagcttctnnnnncctgtgacatcaacgactgagttgtgc 268 Query: 221 gaggagaactatgcgcgctcgtcatatatcgcggagttctacaatactctctctaatgca 280 |||||||| ||||| | ||||||||||||||| || ||||||||||| ||||||||| Sbjct: 269 gaggagaattatgcacactcgtcatatatcgcagaattctacaataccatctctaatgtc 328 Query: 281 ccctgcattcttttggcgcttattggactcgtgaatgctctccgccagcgtttcgagaag 340 || ||| |||||||||| ||||||||| | ||||||||| || |||| |||| ||||| Sbjct: 329 ccatgcgttcttttggcacttattggattagtgaatgctttctgccaaggttttgagaaa 388 Query: 341 cgcttcagcgtcctgcacatatccaatatgatactttccattgggagtatcatcttccat 400 || || || ||||||||||||||||||||||||||| | ||||||||||| || |||||| Sbjct: 389 cgatttagtgtcctgcacatatccaatatgatacttgctattgggagtatgattttccat 448 Query: 401 gcaaccttgcaacatgtcttacagcagagtgatgagactccaatggtgtgggaaatcct 459 || |||||||||| | || |||| ||||||||||||||||| ||||| ||||| ||||| Sbjct: 449 gccaccttgcaacttctcctacaacagagtgatgagactcctatggtttgggagatcct 507
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 200 bits (101), Expect = 3e-48 Identities = 212/249 (85%) Strand = Plus / Minus Query: 160 catggcggattcgatggtggcgagcttctgggggcctgttacgtcaacaactgagctgtg 219 |||||||||||| |||||| | || ||||||||||||||||| |||||||||||||| || Sbjct: 27726483 catggcggattctatggtgtcaagtttctgggggcctgttacttcaacaactgagctctg 27726424 Query: 220 cgaggagaactatgcgcgctcgtcatatatcgcggagttctacaatactctctctaatgc 279 |||||| || ||||| | |||||||||||| || || |||||||||||| | ||||||| Sbjct: 27726423 cgaggaaaattatgcacactcgtcatatattgcagaattctacaatactgtttctaatgt 27726364 Query: 280 accctgcattcttttggcgcttattggactcgtgaatgctctccgccagcgtttcgagaa 339 || || ||||| |||| ||| ||||||| ||||||||||| ||||| |||| ||||| Sbjct: 27726363 tccatgtgttcttctggcacttgttggacttgtgaatgctcttcgccaaggttttgagaa 27726304 Query: 340 gcgcttcagcgtcctgcacatatccaatatgatactttccattgggagtatcatcttcca 399 || ||||| ||||||||||||||||||||||||||| | || || ||||| |||||||| Sbjct: 27726303 acgattcagtgtcctgcacatatccaatatgatacttgctatcggcagtatgatcttcca 27726244 Query: 400 tgcaacctt 408 ||| ||||| Sbjct: 27726243 tgccacctt 27726235 Score = 145 bits (73), Expect = 2e-31 Identities = 94/101 (93%) Strand = Plus / Minus Query: 419 ttacagcagagtgatgagactccaatggtgtgggaaatcctcctatatctgtatgtcctt 478 ||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||| Sbjct: 27724514 ttacagcagagcgatgagactccaatggtgtgggagattctcctatatctttatgtactt 27724455 Query: 479 tattcaccagactggcattacaggagcaccatgcctacttt 519 ||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 27724454 tattcaccagactggcattaccggagcactatgcctacttt 27724414
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 200 bits (101), Expect = 3e-48 Identities = 212/249 (85%) Strand = Plus / Minus Query: 160 catggcggattcgatggtggcgagcttctgggggcctgttacgtcaacaactgagctgtg 219 |||||||||||| |||||| | || ||||||||||||||||| |||||||||||||| || Sbjct: 27817806 catggcggattctatggtgtcaagtttctgggggcctgttacttcaacaactgagctctg 27817747 Query: 220 cgaggagaactatgcgcgctcgtcatatatcgcggagttctacaatactctctctaatgc 279 |||||| || ||||| | |||||||||||| || || |||||||||||| | ||||||| Sbjct: 27817746 cgaggaaaattatgcacactcgtcatatattgcagaattctacaatactgtttctaatgt 27817687 Query: 280 accctgcattcttttggcgcttattggactcgtgaatgctctccgccagcgtttcgagaa 339 || || ||||| |||| ||| ||||||| ||||||||||| ||||| |||| ||||| Sbjct: 27817686 tccatgtgttcttctggcacttgttggacttgtgaatgctcttcgccaaggttttgagaa 27817627 Query: 340 gcgcttcagcgtcctgcacatatccaatatgatactttccattgggagtatcatcttcca 399 || ||||| ||||||||||||||||||||||||||| | || || ||||| |||||||| Sbjct: 27817626 acgattcagtgtcctgcacatatccaatatgatacttgctatcggcagtatgatcttcca 27817567 Query: 400 tgcaacctt 408 ||| ||||| Sbjct: 27817566 tgccacctt 27817558 Score = 145 bits (73), Expect = 2e-31 Identities = 94/101 (93%) Strand = Plus / Minus Query: 419 ttacagcagagtgatgagactccaatggtgtgggaaatcctcctatatctgtatgtcctt 478 ||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||| Sbjct: 27815837 ttacagcagagcgatgagactccaatggtgtgggagattctcctatatctttatgtactt 27815778 Query: 479 tattcaccagactggcattacaggagcaccatgcctacttt 519 ||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 27815777 tattcaccagactggcattaccggagcactatgcctacttt 27815737
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 200 bits (101), Expect = 3e-48 Identities = 212/249 (85%) Strand = Plus / Plus Query: 160 catggcggattcgatggtggcgagcttctgggggcctgttacgtcaacaactgagctgtg 219 |||||||||||| |||||| | || ||||||||||||||||| |||||||||||||| || Sbjct: 87411 catggcggattctatggtgtcaagtttctgggggcctgttacttcaacaactgagctctg 87470 Query: 220 cgaggagaactatgcgcgctcgtcatatatcgcggagttctacaatactctctctaatgc 279 |||||| || ||||| | |||||||||||| || || |||||||||||| | ||||||| Sbjct: 87471 cgaggaaaattatgcacactcgtcatatattgcagaattctacaatactgtttctaatgt 87530 Query: 280 accctgcattcttttggcgcttattggactcgtgaatgctctccgccagcgtttcgagaa 339 || || ||||| |||| ||| ||||||| ||||||||||| ||||| |||| ||||| Sbjct: 87531 tccatgtgttcttctggcacttgttggacttgtgaatgctcttcgccaaggttttgagaa 87590 Query: 340 gcgcttcagcgtcctgcacatatccaatatgatactttccattgggagtatcatcttcca 399 || ||||| ||||||||||||||||||||||||||| | || || ||||| |||||||| Sbjct: 87591 acgattcagtgtcctgcacatatccaatatgatacttgctatcggcagtatgatcttcca 87650 Query: 400 tgcaacctt 408 ||| ||||| Sbjct: 87651 tgccacctt 87659 Score = 145 bits (73), Expect = 2e-31 Identities = 94/101 (93%) Strand = Plus / Plus Query: 419 ttacagcagagtgatgagactccaatggtgtgggaaatcctcctatatctgtatgtcctt 478 ||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||| Sbjct: 89380 ttacagcagagcgatgagactccaatggtgtgggagattctcctatatctttatgtactt 89439 Query: 479 tattcaccagactggcattacaggagcaccatgcctacttt 519 ||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 89440 tattcaccagactggcattaccggagcactatgcctacttt 89480
>gb|BT018444.1| Zea mays clone EL01N0403C06.d mRNA sequence Length = 1361 Score = 115 bits (58), Expect = 1e-22 Identities = 85/94 (90%) Strand = Plus / Plus Query: 420 tacagcagagtgatgagactccaatggtgtgggaaatcctcctatatctgtatgtccttt 479 |||| |||||||| |||||||||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 406 tacaacagagtgacgagactccaatggtctgggagatccttctttatatgtatgtccttt 465 Query: 480 attcaccagactggcattacaggagcaccatgcc 513 ||||||| |||||||||||||||||||| ||||| Sbjct: 466 attcaccggactggcattacaggagcacaatgcc 499
>ref|NM_118359.2| Arabidopsis thaliana ATCES1 (Acyl-CoA independent ceramide synthase); catalytic/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in li> AT4G22330 (ATCES1) mRNA, complete cds Length = 1309 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Plus Query: 356 cacatatccaatatgatactttccattgggagtatcatcttccatgcaaccttgcaacat 415 ||||| || |||||||||||| | || || || || ||| |||||| || |||||||| Sbjct: 427 cacatttcgaatatgatacttgctatcggcagcatgctctaccatgccactttgcaacac 486 Query: 416 gtcttacagcagagtgatgagactccaatggtgtgggaaatcctcctatatctgtatgtc 475 || ||| |||||||||||||| |||||||||||||| || || ||||| |||| || Sbjct: 487 gtgcaacaacagagtgatgagaccccaatggtgtgggagatacttctatacatgtacatc 546 Query: 476 ctttattcaccagactggcattac 499 ||||| |||||||| ||||||||| Sbjct: 547 ctttactcaccagattggcattac 570
>gb|BT008652.1| Arabidopsis thaliana clone RAFL09-74-E03 (R19654) unknown protein (At4g22330) mRNA, complete cds Length = 1204 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Plus Query: 356 cacatatccaatatgatactttccattgggagtatcatcttccatgcaaccttgcaacat 415 ||||| || |||||||||||| | || || || || ||| |||||| || |||||||| Sbjct: 386 cacatttcgaatatgatacttgctatcggcagcatgctctaccatgccactttgcaacac 445 Query: 416 gtcttacagcagagtgatgagactccaatggtgtgggaaatcctcctatatctgtatgtc 475 || ||| |||||||||||||| |||||||||||||| || || ||||| |||| || Sbjct: 446 gtgcaacaacagagtgatgagaccccaatggtgtgggagatacttctatacatgtacatc 505 Query: 476 ctttattcaccagactggcattac 499 ||||| |||||||| ||||||||| Sbjct: 506 ctttactcaccagattggcattac 529
>gb|BT008549.1| Arabidopsis thaliana clone U19654 unknown protein (At4g22330) mRNA, complete cds Length = 799 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Plus Query: 356 cacatatccaatatgatactttccattgggagtatcatcttccatgcaaccttgcaacat 415 ||||| || |||||||||||| | || || || || ||| |||||| || |||||||| Sbjct: 193 cacatttcgaatatgatacttgctatcggcagcatgctctaccatgccactttgcaacac 252 Query: 416 gtcttacagcagagtgatgagactccaatggtgtgggaaatcctcctatatctgtatgtc 475 || ||| |||||||||||||| |||||||||||||| || || ||||| |||| || Sbjct: 253 gtgcaacaacagagtgatgagaccccaatggtgtgggagatacttctatacatgtacatc 312 Query: 476 ctttattcaccagactggcattac 499 ||||| |||||||| ||||||||| Sbjct: 313 ctttactcaccagattggcattac 336
>gb|AY090947.1| Arabidopsis thaliana At4g22330 mRNA sequence Length = 1193 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Plus Query: 356 cacatatccaatatgatactttccattgggagtatcatcttccatgcaaccttgcaacat 415 ||||| || |||||||||||| | || || || || ||| |||||| || |||||||| Sbjct: 386 cacatttcgaatatgatacttgctatcggcagcatgctctaccatgccactttgcaacac 445 Query: 416 gtcttacagcagagtgatgagactccaatggtgtgggaaatcctcctatatctgtatgtc 475 || ||| |||||||||||||| |||||||||||||| || || ||||| |||| || Sbjct: 446 gtgcaacaacagagtgatgagaccccaatggtgtgggagatacttctatacatgtacatc 505 Query: 476 ctttattcaccagactggcattac 499 ||||| |||||||| ||||||||| Sbjct: 506 ctttactcaccagattggcattac 529
>dbj|AB063253.1| Arabidopsis thaliana AtCES1 mRNA for Acyl-CoA independent ceramide synthase, complete cds Length = 1235 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Plus Query: 356 cacatatccaatatgatactttccattgggagtatcatcttccatgcaaccttgcaacat 415 ||||| || |||||||||||| | || || || || ||| |||||| || |||||||| Sbjct: 427 cacatttcgaatatgatacttgctatcggcagcatgctctaccatgccactttgcaacac 486 Query: 416 gtcttacagcagagtgatgagactccaatggtgtgggaaatcctcctatatctgtatgtc 475 || ||| |||||||||||||| |||||||||||||| || || ||||| |||| || Sbjct: 487 gtgcaacaacagagtgatgagaccccaatggtgtgggagatacttctatacatgtacatc 546 Query: 476 ctttattcaccagactggcattac 499 ||||| |||||||| ||||||||| Sbjct: 547 ctttactcaccagattggcattac 570
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57 Length = 199577 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 425 cagagtgatgagactccaatggtgtgggaaatcctcctatatctgtatgtcctttattca 484 |||||||||||||| |||||||||||||| || || ||||| |||| ||||||| ||| Sbjct: 35750 cagagtgatgagaccccaatggtgtgggagatacttctatacatgtacatcctttactca 35809 Query: 485 ccagactggcattac 499 ||||| ||||||||| Sbjct: 35810 ccagattggcattac 35824
>emb|AL021712.2|ATT10I14 Arabidopsis thaliana DNA chromosome 4, BAC clone T10I14 (ESSA project) Length = 82891 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 425 cagagtgatgagactccaatggtgtgggaaatcctcctatatctgtatgtcctttattca 484 |||||||||||||| |||||||||||||| || || ||||| |||| ||||||| ||| Sbjct: 69655 cagagtgatgagaccccaatggtgtgggagatacttctatacatgtacatcctttactca 69714 Query: 485 ccagactggcattac 499 ||||| ||||||||| Sbjct: 69715 ccagattggcattac 69729
>emb|BX827086.1|CNS0A3AB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB93ZD03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1137 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 426 agagtgatgagactccaatggtgtgggaaatcctcctatatctgtatgtcctttattcac 485 ||||||||||||| |||||||||||||| || || ||||| |||| ||||||| |||| Sbjct: 469 agagtgatgagaccccaatggtgtgggagatacttctatacatgtacatcctttactcac 528 Query: 486 cagactggcattac 499 |||| ||||||||| Sbjct: 529 cagattggcattac 542
>gb|BT014130.1| Lycopersicon esculentum clone 133246F, mRNA sequence Length = 1225 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 429 gtgatgagactccaatggtgtgggaaatcctcctatatctgtatgtcctttattcaccag 488 |||||||||| |||||||| ||||| || || || ||| | ||| |||| |||||||||| Sbjct: 437 gtgatgagacaccaatggtctgggagatgcttctgtatatctatatcctctattcaccag 496 Query: 489 actggcatta 498 | |||||||| Sbjct: 497 attggcatta 506
>ref|XR_003419.1| PREDICTED: Mus musculus similar to Histone H2B F (H2B 291A) (LOC384052), mRNA Length = 377 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 ttggtgccctccaacaccgcg 104 ||||||||||||||||||||| Sbjct: 346 ttggtgccctccaacaccgcg 326
>emb|X90779.1|MMPSHIS2B M.musculus psH2B gene Length = 1312 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 ttggtgccctccaacaccgcg 104 ||||||||||||||||||||| Sbjct: 1148 ttggtgccctccaacaccgcg 1128
>emb|AL645563.12| Mouse DNA sequence from clone RP23-132L14 on chromosome 4, complete sequence Length = 214456 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 ttggtgccctccaacaccgcg 104 ||||||||||||||||||||| Sbjct: 140834 ttggtgccctccaacaccgcg 140854
>gb|AY683136.1| Suid herpesvirus 1 strain SH glycoprotein gI (US7) and glycoprotein gE (US8) genes, partial cds Length = 848 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cgatggtggcgagcttctgg 190 |||||||||||||||||||| Sbjct: 332 cgatggtggcgagcttctgg 313
>gb|AY683135.1| Suid herpesvirus 1 strain LA glycoprotein gI (US7) and glycoprotein gE (US8) genes, partial cds Length = 851 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cgatggtggcgagcttctgg 190 |||||||||||||||||||| Sbjct: 333 cgatggtggcgagcttctgg 314
>gb|AY683134.1| Suid herpesvirus 1 strain RongA glycoprotein gI (US7) and glycoprotein gE (US8) genes, partial cds Length = 848 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cgatggtggcgagcttctgg 190 |||||||||||||||||||| Sbjct: 333 cgatggtggcgagcttctgg 314
>ref|XM_867927.1| PREDICTED: Bos taurus similar to Olfactory receptor 5A2 (LOC505072), mRNA Length = 399 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gcactgcacggcacagccca 32 |||||||||||||||||||| Sbjct: 132 gcactgcacggcacagccca 113
>dbj|AB197878.1| Bombyx mori BmGRP3 mRNA for glycine rich protein, complete cds Length = 1475 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 catggcggattcgatggtgg 179 |||||||||||||||||||| Sbjct: 197 catggcggattcgatggtgg 216
>gb|AF306511.1|AF306511 Pseudorabies virus Ea glycoprotein I (gI) gene, complete cds Length = 1187 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cgatggtggcgagcttctgg 190 |||||||||||||||||||| Sbjct: 1117 cgatggtggcgagcttctgg 1098
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ggtgccctccaacaccgcgc 105 |||||||||||||||||||| Sbjct: 4922643 ggtgccctccaacaccgcgc 4922662 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,070,715 Number of Sequences: 3902068 Number of extensions: 3070715 Number of successful extensions: 46902 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46795 Number of HSP's gapped (non-prelim): 107 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)