ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags20i09 |
|---|---|
| Clone Library Name | barley_pub |
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 176 bits (446), Expect = 4e-44 Identities = 80/138 (57%), Positives = 98/138 (71%) Frame = +2 Query: 2 GLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGISNAIN 181 GLLK++AG+DT+FTVT+KA DD++F ELY FKW N +GVVAGIS+AIN Sbjct: 889 GLLKILAGIDTNFTVTSKATDDDDFGELYAFKWTTLLIPPTTVLIINIVGVVAGISDAIN 948 Query: 182 NGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVN 361 NGY+SWGPLFGKLFF+FWVIVHLYPFLKGL+GRQNRTPT R++ Sbjct: 949 NGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRID 1008 Query: 362 PFLAKTDGPLLEECGLDC 415 PF+ KT GP +CG++C Sbjct: 1009 PFVLKTKGPDTSKCGINC 1026
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 173 bits (439), Expect = 3e-43 Identities = 83/138 (60%), Positives = 97/138 (70%) Frame = +2 Query: 2 GLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGISNAIN 181 GLLKV+AGV T+FTVT+KA DD EFSELY FKW N +GV+ G+S+AIN Sbjct: 950 GLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGVSDAIN 1009 Query: 182 NGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVN 361 NGY+SWGPLFG+LFFA WVIVHLYPFLKGLLG+Q+R PT RVN Sbjct: 1010 NGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILLASILTLLWVRVN 1069 Query: 362 PFLAKTDGPLLEECGLDC 415 PF++K DGP+LE CGLDC Sbjct: 1070 PFVSK-DGPVLEICGLDC 1086
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 172 bits (437), Expect = 5e-43 Identities = 83/140 (59%), Positives = 96/140 (68%), Gaps = 2/140 (1%) Frame = +2 Query: 2 GLLKVIAGVDTSFTVTTKAGDDE--EFSELYTFKWXXXXXXXXXXXXXNFIGVVAGISNA 175 GLLKV+ GVDT+FTVT+K DE EF +LY FKW N +GVVAG+S+A Sbjct: 910 GLLKVLFGVDTNFTVTSKGASDEADEFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDA 969 Query: 176 INNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXR 355 INNGY SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPT R Sbjct: 970 INNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVR 1029 Query: 356 VNPFLAKTDGPLLEECGLDC 415 ++PFL K GPLL++CG+DC Sbjct: 1030 IDPFLPKQTGPLLKQCGVDC 1049
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 172 bits (436), Expect = 6e-43 Identities = 84/138 (60%), Positives = 98/138 (71%) Frame = +2 Query: 2 GLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGISNAIN 181 GLLKV+AGV+T+FTVT+KA DD EFSELY FKW N IGV+ GIS+AI+ Sbjct: 932 GLLKVLAGVETNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINVIGVIVGISDAIS 991 Query: 182 NGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVN 361 NGY+SWGPLFG+LFFAFWVI+HLYPFLKGLLG+Q+R PT RVN Sbjct: 992 NGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVN 1051 Query: 362 PFLAKTDGPLLEECGLDC 415 PF+AK GP+LE CGLDC Sbjct: 1052 PFVAK-GGPILEICGLDC 1068
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 170 bits (431), Expect = 2e-42 Identities = 82/138 (59%), Positives = 97/138 (70%) Frame = +2 Query: 2 GLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGISNAIN 181 GLLKV+AGVDT+FTVT+KA DD EFS+LY FKW N IGV+ G+S+AI+ Sbjct: 947 GLLKVLAGVDTNFTVTSKAADDGEFSDLYLFKWTSLLIPPMTLLIINVIGVIVGVSDAIS 1006 Query: 182 NGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVN 361 NGY+SWGPLFG+LFFA WVI+HLYPFLKGLLG+Q+R PT RVN Sbjct: 1007 NGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRVN 1066 Query: 362 PFLAKTDGPLLEECGLDC 415 PF+AK GP+LE CGLDC Sbjct: 1067 PFVAK-GGPILEICGLDC 1083
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 166 bits (421), Expect = 3e-41 Identities = 77/139 (55%), Positives = 98/139 (70%), Gaps = 1/139 (0%) Frame = +2 Query: 2 GLLKVIAGVDTSFTVTTKAGDDE-EFSELYTFKWXXXXXXXXXXXXXNFIGVVAGISNAI 178 G+LKV+AG+DT+FTVT+KA D++ +F+ELY FKW N +GVVAG+S AI Sbjct: 927 GILKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIVNLVGVVAGVSYAI 986 Query: 179 NNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRV 358 N+GY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPT R+ Sbjct: 987 NSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRI 1046 Query: 359 NPFLAKTDGPLLEECGLDC 415 +PF ++ GP + ECG++C Sbjct: 1047 DPFTSRVTGPDILECGINC 1065
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 164 bits (415), Expect = 2e-40 Identities = 79/138 (57%), Positives = 96/138 (69%) Frame = +2 Query: 2 GLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGISNAIN 181 GLLKV+AGV+T+FTVT+KA DD FSELY FKW N IGV+ G+S+AI+ Sbjct: 946 GLLKVLAGVNTNFTVTSKAADDGAFSELYIFKWTTLLIPPTTLLIINIIGVIVGVSDAIS 1005 Query: 182 NGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVN 361 NGY+SWGPLFG+LFFA WVIVHLYPFLKG+LG+Q++ PT RVN Sbjct: 1006 NGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILLASILTLLWVRVN 1065 Query: 362 PFLAKTDGPLLEECGLDC 415 PF+AK GP+LE CGL+C Sbjct: 1066 PFVAK-GGPVLEICGLNC 1082
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 154 bits (389), Expect = 2e-37 Identities = 71/127 (55%), Positives = 86/127 (67%) Frame = +2 Query: 2 GLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGISNAIN 181 G LK++AG+DT+FTVT+K DD EF ELY KW N +GVVAG S+A+N Sbjct: 846 GFLKMLAGLDTNFTVTSKTADDLEFGELYIVKWTTLLIPPTSLLIINLVGVVAGFSDALN 905 Query: 182 NGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVN 361 GYE+WGPLFGK+FFAFWVI+HLYPFLKGL+GRQNRTPT R+N Sbjct: 906 KGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLASVFSLVWVRIN 965 Query: 362 PFLAKTD 382 PF++KTD Sbjct: 966 PFVSKTD 972
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 149 bits (377), Expect = 4e-36 Identities = 71/124 (57%), Positives = 86/124 (69%), Gaps = 1/124 (0%) Frame = +2 Query: 2 GLLKVIAGVDTSFTVTTKAGDDE-EFSELYTFKWXXXXXXXXXXXXXNFIGVVAGISNAI 178 GLLKV+AG+DT+FTVT+KA D++ +F+ELY FKW N IG+VAG+S A+ Sbjct: 942 GLLKVLAGIDTNFTVTSKATDEDGDFAELYIFKWTALLIPPTTVLLVNLIGIVAGVSYAV 1001 Query: 179 NNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRV 358 N+GY+SWGPLFGKLFFA WVI HLYPFLKGLLGRQNRTPT R+ Sbjct: 1002 NSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRI 1061 Query: 359 NPFL 370 NPF+ Sbjct: 1062 NPFV 1065
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 149 bits (377), Expect = 4e-36 Identities = 70/127 (55%), Positives = 86/127 (67%), Gaps = 1/127 (0%) Frame = +2 Query: 2 GLLKVIAGVDTSFTVTTKAGDDE-EFSELYTFKWXXXXXXXXXXXXXNFIGVVAGISNAI 178 GLLKV AG+DT+FTVT+KA D++ +F+ELY FKW N +G+VAG+S AI Sbjct: 929 GLLKVFAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTILLVNLVGIVAGVSYAI 988 Query: 179 NNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRV 358 N+GY+SWGPL GKL FAFWV+ HLYPFLKGLLGRQNRTPT R+ Sbjct: 989 NSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVWSALLASIFSLLWVRI 1048 Query: 359 NPFLAKT 379 NPF++ T Sbjct: 1049 NPFVSTT 1055
>KLF5_HUMAN (Q13887) Krueppel-like factor 5 (Intestinal-enriched krueppel-like| factor) (Colon krueppel-like factor) (Transcription factor BTEB2) (Basic transcription element-binding protein 2) (BTE-binding protein 2) (GC box-binding protein 2) Length = 457 Score = 33.1 bits (74), Expect = 0.59 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = -3 Query: 460 PHDRLVLIQSFHLLGAVQTALLQKRAVGLGEERVHTH--PQERDDRSQQDGPDDHDRRGP 287 P D V Q +LGA A + A+ GEE H H PQ + +Q P GP Sbjct: 21 PQDEPVFAQLKPVLGAANPA--RDAALFPGEELKHAHHRPQAQPAPAQAPQPAQPPATGP 78 Query: 286 VLPSQQTLEERVQMNNH 236 LP + ++ R +M + Sbjct: 79 RLPPEDLVQTRCEMEKY 95
>SELO_HUMAN (Q9BVL4) Selenoprotein O| Length = 669 Score = 31.2 bits (69), Expect = 2.2 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = +1 Query: 196 MGASLREALLRVLGDCSSVPVPQGSVGKAEQDPDDRDRLVHPVGFDHLA----PVGACEP 363 +GASL A L LG CS P P+ ++ A +P R + + FD+ A PV A P Sbjct: 8 LGASLAAARLLPLGRCSPSPAPRSTLSGAAMEP--APRWLAGLRFDNRALRALPVEAPPP 65 Query: 364 FP 369 P Sbjct: 66 GP 67
>RS4_BURS3 (Q39KE2) 30S ribosomal protein S4| Length = 207 Score = 30.8 bits (68), Expect = 2.9 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 10/109 (9%) Frame = -1 Query: 381 SVLARKGF--TRTHRSEMIEANRMDQTITIVGVLFCLPNRPLRNGYR*TITQNAKK---- 220 +V+ R GF TR +++ ++IT+ GV+ +P++ +++G I + AKK Sbjct: 101 NVVYRMGFGSTRAEARQLVS----HKSITVNGVVANVPSQQVKSGDVVAIREKAKKQARI 156 Query: 219 ----SFPKRGPHDSYPLLIALEMPATTPMKFSRSRVVGGINKVVHLNVY 85 S ++G S+ + A + T R+ + G IN+ + + +Y Sbjct: 157 VEALSLAEQGGMPSWVAVDAKKFEGTFKQMPERAEIAGDINESLIVELY 205
>MEX1_ORYSA (Q7XTQ5) Maltose excess protein 1-like, chloroplast precursor| Length = 399 Score = 30.4 bits (67), Expect = 3.8 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -2 Query: 431 ISSPRCSPDRTPPEEGRRSWRGKGSHAPTGA 339 +SS R PP GRR WR G+ AP+ A Sbjct: 5 VSSVRLPLRAAPPLYGRREWRADGARAPSPA 35
>MURA_MYCNE (O33159) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) (Fragment) Length = 113 Score = 30.0 bits (66), Expect = 5.0 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -3 Query: 70 LIISGLCCDGEASVHTSYHLEK 5 L+++GL DGE VH YH+++ Sbjct: 71 LVLAGLVADGETEVHDVYHIDR 92
>PFDA2_METJA (Q58064) Prefoldin alpha subunit 2 (GimC alpha subunit 2)| Length = 147 Score = 30.0 bits (66), Expect = 5.0 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%) Frame = +1 Query: 202 ASLREAL-----LRVLGDCSSVPVPQGSVGKAEQDPDDRDRLVHPVG 327 A+LR++L L+ LG+ +V VP GS+ + E + D++V VG Sbjct: 34 ATLRQSLATLKSLKTLGEGKTVLVPVGSIAQVEMKVEKMDKVVVSVG 80
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3| theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 30.0 bits (66), Expect = 5.0 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 370 EERVHTHPQERDDRSQQDGPDDHDRRGPVLPSQQ 269 ++R RD R ++D DD DRRGP L S++ Sbjct: 1271 DDRRRERDDRRDLRERRDLRDDRDRRGPPLRSER 1304
>PSAB_PINKO (Q85WX0) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)| (PSI-B) Length = 734 Score = 29.6 bits (65), Expect = 6.5 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = +1 Query: 19 SWCGH*LHRHNKGRR**GVF*AVHIQMDNLVDSPDHPASAELHRCGCWHL 168 +W GH +H R VH++ DN +D HP E G W+L Sbjct: 189 AWTGHLVHVAIPESR------GVHVRWDNFLDELPHPQGLEPFFTGQWNL 232
>PSAB_CYACA (Q9TLQ6) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)| (PSI-B) Length = 734 Score = 29.6 bits (65), Expect = 6.5 Identities = 15/48 (31%), Positives = 21/48 (43%) Frame = +1 Query: 19 SWCGH*LHRHNKGRR**GVF*AVHIQMDNLVDSPDHPASAELHRCGCW 162 +WCGH +H R HI +N + +P HPA + G W Sbjct: 189 AWCGHLIHVAIPASR------GQHIGWNNFLTTPPHPAGLKPFFTGNW 230
>AHI1_HUMAN (Q8N157) Jouberin (Abelson helper integration site 1 protein| homolog) (AHI-1) Length = 1196 Score = 29.6 bits (65), Expect = 6.5 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = -3 Query: 547 FLSTQGREGGREEWKRKKNYGHKNTFKITPHDRLVLIQSFH 425 ++ T +G WK + N + NTF++ PH V FH Sbjct: 668 YILTSSSDGTARIWKNEIN--NTNTFRVLPHPSFVYTAKFH 706
>MURA_BURPS (Q63Q84) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 449 Score = 29.3 bits (64), Expect = 8.5 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -3 Query: 70 LIISGLCCDGEASVHTSYHLEK 5 L+I+GLC GE V YHL++ Sbjct: 404 LVIAGLCAQGETLVERIYHLDR 425
>MURA_BURP1 (Q3JMZ4) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 449 Score = 29.3 bits (64), Expect = 8.5 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -3 Query: 70 LIISGLCCDGEASVHTSYHLEK 5 L+I+GLC GE V YHL++ Sbjct: 404 LVIAGLCAQGETLVERIYHLDR 425
>MURA_BURMA (Q62GD7) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 449 Score = 29.3 bits (64), Expect = 8.5 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -3 Query: 70 LIISGLCCDGEASVHTSYHLEK 5 L+I+GLC GE V YHL++ Sbjct: 404 LVIAGLCAQGETLVERIYHLDR 425
>PDLI2_MOUSE (Q8R1G6) PDZ and LIM domain protein 2 (PDZ-LIM protein mystique)| Length = 349 Score = 29.3 bits (64), Expect = 8.5 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -2 Query: 452 STCFDPIISSPR-CSPDRTPP 393 S CF P+ SPR CSP TPP Sbjct: 120 SACFSPVSLSPRPCSPFSTPP 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,642,715 Number of Sequences: 219361 Number of extensions: 1553266 Number of successful extensions: 3847 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3739 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3835 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
