ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags20h24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY557340.2| Triticum aestivum root hair defective 3 GTP-bindi... 807 0.0
2dbj|AK101859.1| Oryza sativa (japonica cultivar-group) cDNA clon... 434 e-118
3ref|NM_193615.1| Oryza sativa (japonica cultivar-group), predic... 426 e-116
4dbj|AK101558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 426 e-116
5dbj|AK070726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 418 e-114
6gb|AY104942.1| Zea mays PCO129434 mRNA sequence 250 4e-63
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
8dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
9gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence 52 0.002
10ref|NM_112241.3| Arabidopsis thaliana RHD3 (ROOT HAIR DEFECTIVE ... 46 0.10
11ref|NM_202579.1| Arabidopsis thaliana RHD3 (ROOT HAIR DEFECTIVE ... 46 0.10
12gb|AY128801.1| Arabidopsis thaliana unknown protein (At3g13870) ... 46 0.10
13gb|AY092988.1| Arabidopsis thaliana unknown protein (At3g13870) ... 46 0.10
14dbj|AB028610.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 46 0.10
15gb|U86081.1|ATU86081 Arabidopsis thaliana root hair defective 3 ... 46 0.10
16emb|Z29560.1|CEK03H1 Caenorhabditis elegans Cosmid K03H1, comple... 42 1.6
17ref|NM_066810.1| Caenorhabditis elegans K03H1.11 (K03H1.11) mRNA... 42 1.6
18gb|AC093084.4| Homo sapiens BAC clone RP11-699O7 from 2, complet... 42 1.6
19gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 6.4
20gb|AC006465.2| Homo sapiens BAC clone RP11-438H20 from 7, comple... 40 6.4
21ref|XM_862493.1| PREDICTED: Canis familiaris similar to Hypothet... 40 6.4
22gb|AC109612.22| Mus musculus strain C57BL/6J clone rp23-37i3 map... 40 6.4
23emb|BX284686.9| Human DNA sequence from clone DASS-39F23 on chro... 40 6.4
24emb|AL662884.11| Human DNA sequence from clone XXbac-300A18 on c... 40 6.4
25emb|AL627203.7| Human DNA sequence from clone RP11-446M5 on chro... 40 6.4
26emb|AL662828.5| Human DNA sequence from clone XXbac-105D18 on ch... 40 6.4
27emb|AL035662.65|HS599F21 Human DNA sequence from clone RP4-599F2... 40 6.4
28emb|CR933878.7| Human DNA sequence from clone DAMC-108L3 on chro... 40 6.4
29emb|CR812478.6| Human DNA sequence from clone DAAP-218M18 on chr... 40 6.4
30emb|CR753803.4| Human DNA sequence from clone DADB-220I18 on chr... 40 6.4
31gb|AC084452.1|AC084452 Caenorhabditis briggsae cosmid CB024D21, ... 40 6.4
32gb|AC006195.1|AC006195 Homo sapiens clone RP11-350H1 from 7p14-1... 40 6.4
33emb|AL596139.1|CNS07EGR BAC A of library A from Tetraodon nigrov... 40 6.4
34gb|AC164541.3| Mus musculus chromosome 1, clone RP24-172N7, comp... 40 6.4
35gb|AC105073.16| Mus musculus chromosome 1, clone RP23-288J11, co... 40 6.4
36emb|AL808026.10| Mouse DNA sequence from clone RP23-200N16 on ch... 40 6.4

>gb|AY557340.2| Triticum aestivum root hair defective 3 GTP-binding protein (wrsi2)
            mRNA, complete cds
          Length = 2800

 Score =  807 bits (407), Expect = 0.0
 Identities = 446/459 (97%)
 Strand = Plus / Plus

                                                                        
Query: 13   tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72
            |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1846 tgaagttgctttctacgatggctgcaattcggttggaagaagatggtgacaacattgata 1905

                                                                        
Query: 73   ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1906 ccactctttcccttgctctagtagatgctgcgaggccagggactacagatagaagtattc 1965

                                                                        
Query: 133  aatcgcttgatccacttgcctccagttcatgggaaagggttccagaggagagaactttaa 192
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1966 aatcgcttgatccactcgcctccagttcatgggaaagggttccagaggagagaactttaa 2025

                                                                        
Query: 193  tctcccctgtccagtgcaagtctctttggaggcaatttaaagctgaaaccgagtataccg 252
            ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 2026 tctcccctgtccagtgcaagtctctgtggaggcaatttaaagctgaaactgagtataccg 2085

                                                                        
Query: 253  tcactcaagccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctc 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2086 tcactcaagccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctc 2145

                                                                        
Query: 313  catgggcgctcgctgcgatggctctccttggtttcaacgagtttatgacattactgagga 372
            ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||
Sbjct: 2146 catgggcgctcgctgcgatggctgtccttggtttcaatgagttcatgacattactgagga 2205

                                                                        
Query: 373  acccgttttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtac 432
            |||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 2206 acccattttacctggccgtcatgtttgtagttttcctagtcgggaaagccatatgggtac 2265

                                                   
Query: 433  aactagacattgccaacgaattccgaaatggatttcttc 471
            |||||||||||||||| ||||||||||||||||||||||
Sbjct: 2266 aactagacattgccaatgaattccgaaatggatttcttc 2304



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>dbj|AK101859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069P18, full
            insert sequence
          Length = 2988

 Score =  434 bits (219), Expect = e-118
 Identities = 399/459 (86%)
 Strand = Plus / Plus

                                                                        
Query: 13   tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72
            |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 1862 tgaagttgctttctacaatggctgcaattcgattggatgaagatggtgacaacattgaga 1921

                                                                        
Query: 73   ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132
             ||| || |||||||||||||| ||  | || |||||||||||||||||||| || || |
Sbjct: 1922 acaccctgtcccttgctctagttgacacagcaaggccagggactacagataggagcatcc 1981

                                                                        
Query: 133  aatcgcttgatccacttgcctccagttcatgggaaagggttccagaggagagaactttaa 192
            ||||| | |||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct: 1982 aatcgttcgatccacttgcctctagctcatgggaaagggttccagaggagaaaactttaa 2041

                                                                        
Query: 193  tctcccctgtccagtgcaagtctctttggaggcaatttaaagctgaaaccgagtataccg 252
            |  | |||||||||||||| ||| | |||||||||||||| |||||||| || ||||| |
Sbjct: 2042 ttacacctgtccagtgcaaatctttatggaggcaatttaaggctgaaactgaatatactg 2101

                                                                        
Query: 253  tcactcaagccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctc 312
            |||| || ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 2102 tcacacaggccatagctgctcaggaggcaaataagaggaacaacaactggctgccacctc 2161

                                                                        
Query: 313  catgggcgctcgctgcgatggctctccttggtttcaacgagtttatgacattactgagga 372
            ||||||| || || || |||||| ||||||| ||||||||||| ||||||||  | | ||
Sbjct: 2162 catgggcacttgccgcaatggctatccttggattcaacgagttcatgacattgttaaaga 2221

                                                                        
Query: 373  acccgttttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtac 432
            | ||  |||||||||  ||||| ||||| |||||||| || || ||||||||||||||||
Sbjct: 2222 atcccctttacctgggagtcatatttgttgttttccttgttggaaaagccatgtgggtac 2281

                                                   
Query: 433  aactagacattgccaacgaattccgaaatggatttcttc 471
            | |||||||||||||| || |||| ||||||||||||||
Sbjct: 2282 agctagacattgccaaggagttccaaaatggatttcttc 2320



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>ref|NM_193615.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2421

 Score =  426 bits (215), Expect = e-116
 Identities = 398/459 (86%)
 Strand = Plus / Plus

                                                                        
Query: 13   tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72
            |||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 1736 tgaagttgctttctacaatggctgcaattcgattggatgaggatggtgacaacattgaga 1795

                                                                        
Query: 73   ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132
             ||| || |||||||||||||| ||  | || |||||||||||||||||||| || || |
Sbjct: 1796 acaccctgtcccttgctctagttgacacagcaaggccagggactacagataggagcatcc 1855

                                                                        
Query: 133  aatcgcttgatccacttgcctccagttcatgggaaagggttccagaggagagaactttaa 192
            ||||| | |||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct: 1856 aatcgttcgatccacttgcctctagctcatgggaaagggttccagaggagaaaactttaa 1915

                                                                        
Query: 193  tctcccctgtccagtgcaagtctctttggaggcaatttaaagctgaaaccgagtataccg 252
            |  | |||||||||||||| ||| | |||||||||||||| |||||||| || ||||| |
Sbjct: 1916 ttacacctgtccagtgcaaatctttatggaggcaatttaaggctgaaactgaatatactg 1975

                                                                        
Query: 253  tcactcaagccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctc 312
            |||| || ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 1976 tcacacaggccatagctgctcaggaggcaaataagaggaacaacaactggctgccacctc 2035

                                                                        
Query: 313  catgggcgctcgctgcgatggctctccttggtttcaacgagtttatgacattactgagga 372
            ||||||| || || || |||||| ||||||| ||||||||||| ||||||||  | | ||
Sbjct: 2036 catgggcacttgccgcaatggctatccttggattcaacgagttcatgacattgttaaaga 2095

                                                                        
Query: 373  acccgttttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtac 432
            | ||  |||||||||  ||||| ||||| |||||||| || || ||||||||||||||||
Sbjct: 2096 atcccctttacctgggagtcatatttgttgttttccttgttggaaaagccatgtgggtac 2155

                                                   
Query: 433  aactagacattgccaacgaattccgaaatggatttcttc 471
            | |||||||||||||| || |||| ||||||||||||||
Sbjct: 2156 agctagacattgccaaggagttccaaaatggatttcttc 2194



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>dbj|AK101558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050C19, full
            insert sequence
          Length = 2213

 Score =  426 bits (215), Expect = e-116
 Identities = 398/459 (86%)
 Strand = Plus / Plus

                                                                        
Query: 13   tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72
            |||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 1165 tgaagttgctttctacaatggctgcaattcgattggatgaggatggtgacaacattgaga 1224

                                                                        
Query: 73   ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132
             ||| || |||||||||||||| ||  | || |||||||||||||||||||| || || |
Sbjct: 1225 acaccctgtcccttgctctagttgacacagcaaggccagggactacagataggagcatcc 1284

                                                                        
Query: 133  aatcgcttgatccacttgcctccagttcatgggaaagggttccagaggagagaactttaa 192
            ||||| | |||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct: 1285 aatcgttcgatccacttgcctctagctcatgggaaagggttccagaggagaaaactttaa 1344

                                                                        
Query: 193  tctcccctgtccagtgcaagtctctttggaggcaatttaaagctgaaaccgagtataccg 252
            |  | |||||||||||||| ||| | |||||||||||||| |||||||| || ||||| |
Sbjct: 1345 ttacacctgtccagtgcaaatctttatggaggcaatttaaggctgaaactgaatatactg 1404

                                                                        
Query: 253  tcactcaagccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctc 312
            |||| || ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 1405 tcacacaggccatagctgctcaggaggcaaataagaggaacaacaactggctgccacctc 1464

                                                                        
Query: 313  catgggcgctcgctgcgatggctctccttggtttcaacgagtttatgacattactgagga 372
            ||||||| || || || |||||| ||||||| ||||||||||| ||||||||  | | ||
Sbjct: 1465 catgggcacttgccgcaatggctatccttggattcaacgagttcatgacattgttaaaga 1524

                                                                        
Query: 373  acccgttttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtac 432
            | ||  |||||||||  ||||| ||||| |||||||| || || ||||||||||||||||
Sbjct: 1525 atcccctttacctgggagtcatatttgttgttttccttgttggaaaagccatgtgggtac 1584

                                                   
Query: 433  aactagacattgccaacgaattccgaaatggatttcttc 471
            | |||||||||||||| || |||| ||||||||||||||
Sbjct: 1585 agctagacattgccaaggagttccaaaatggatttcttc 1623



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>dbj|AK070726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059E17, full
            insert sequence
          Length = 2994

 Score =  418 bits (211), Expect = e-114
 Identities = 397/459 (86%)
 Strand = Plus / Plus

                                                                        
Query: 13   tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72
            |||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 1905 tgaagttgctttctacaatggctgcaattcgattggatgaggatggtgacaacattgaga 1964

                                                                        
Query: 73   ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132
             ||| || |||||||||||||| ||  | || |||||||||||||||||||| || || |
Sbjct: 1965 acaccctgtcccttgctctagttgacacagcaaggccagggactacagataggagcatcc 2024

                                                                        
Query: 133  aatcgcttgatccacttgcctccagttcatgggaaagggttccagaggagagaactttaa 192
            ||||| | |||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct: 2025 aatcgttcgatccacttgcctctagctcatgggaaagggttccagaggagaaaactttaa 2084

                                                                        
Query: 193  tctcccctgtccagtgcaagtctctttggaggcaatttaaagctgaaaccgagtataccg 252
            |  | |||||||||||||| ||| | |||||||||||||| |||||| | || ||||| |
Sbjct: 2085 ttacacctgtccagtgcaaatctttatggaggcaatttaaggctgaagctgaatatactg 2144

                                                                        
Query: 253  tcactcaagccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctc 312
            |||| || ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 2145 tcacacaggccatagctgctcaggaggcaaataagaggaacaacaactggctgccacctc 2204

                                                                        
Query: 313  catgggcgctcgctgcgatggctctccttggtttcaacgagtttatgacattactgagga 372
            ||||||| || || || |||||| ||||||| ||||||||||| ||||||||  | | ||
Sbjct: 2205 catgggcacttgccgcaatggctatccttggattcaacgagttcatgacattgttaaaga 2264

                                                                        
Query: 373  acccgttttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtac 432
            | ||  |||||||||  ||||| ||||| |||||||| || || ||||||||||||||||
Sbjct: 2265 atcccctttacctgggagtcatatttgttgttttccttgttggaaaagccatgtgggtac 2324

                                                   
Query: 433  aactagacattgccaacgaattccgaaatggatttcttc 471
            | |||||||||||||| || |||| ||||||||||||||
Sbjct: 2325 agctagacattgccaaggagttccaaaatggatttcttc 2363



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>gb|AY104942.1| Zea mays PCO129434 mRNA sequence
          Length = 1061

 Score =  250 bits (126), Expect = 4e-63
 Identities = 216/246 (87%)
 Strand = Plus / Plus

                                                                       
Query: 141 gatccacttgcctccagttcatgggaaagggttccagaggagagaactttaatctcccct 200
           ||||||||||||||||||||||||||||||||| | |||||||  ||||||||  |||||
Sbjct: 25  gatccacttgcctccagttcatgggaaagggttgccgaggagaagactttaattacccct 84

                                                                       
Query: 201 gtccagtgcaagtctctttggaggcaatttaaagctgaaaccgagtataccgtcactcaa 260
           || ||||||||   | | ||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 85  gtgcagtgcaaaaatttgtggaggcaattcaaggctgaaactgaatatacagtgactcaa 144

                                                                       
Query: 261 gccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctccatgggcg 320
           ||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||||| 
Sbjct: 145 gccttagctgctcaggaagcaaataagaggaacaacaactggctaccacctccatgggca 204

                                                                       
Query: 321 ctcgctgcgatggctctccttggtttcaacgagtttatgacattactgaggaacccgttt 380
           || ||||| |||||| | ||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct: 205 cttgctgcaatggctattcttggattcaacgagttcatgacattactgaggaacccgctt 264

                 
Query: 381 tacctg 386
           ||||||
Sbjct: 265 tacctg 270



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  159 bits (80), Expect = 1e-35
 Identities = 140/160 (87%)
 Strand = Plus / Plus

                                                                            
Query: 13       tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72
                |||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 22123258 tgaagttgctttctacaatggctgcaattcgattggatgaggatggtgacaacattgaga 22123317

                                                                            
Query: 73       ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132
                 ||| || |||||||||||||| ||  | || |||||||||||||||||||| || || |
Sbjct: 22123318 acaccctgtcccttgctctagttgacacagcaaggccagggactacagataggagcatcc 22123377

                                                        
Query: 133      aatcgcttgatccacttgcctccagttcatgggaaagggt 172
                ||||| | |||||||||||||| || ||||||||||||||
Sbjct: 22123378 aatcgttcgatccacttgcctctagctcatgggaaagggt 22123417



 Score =  109 bits (55), Expect = 8e-21
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                            
Query: 170      ggttccagaggagagaactttaatctcccctgtccagtgcaagtctctttggaggcaatt 229
                |||||||||||||| |||||||||  | |||||||||||||| ||| | |||||||||||
Sbjct: 22123550 ggttccagaggagaaaactttaattacacctgtccagtgcaaatctttatggaggcaatt 22123609

                                                               
Query: 230      taaagctgaaaccgagtataccgtcactcaagccatagctgctcagg 276
                ||| |||||||| || ||||| ||||| || ||||||||||||||||
Sbjct: 22123610 taaggctgaaactgaatatactgtcacacaggccatagctgctcagg 22123656



 Score =  105 bits (53), Expect = 1e-19
 Identities = 83/93 (89%)
 Strand = Plus / Plus

                                                                            
Query: 272      tcaggaagcaaacaagaggaacaacaactggctgcctcctccatgggcgctcgctgcgat 331
                |||||| ||||| ||||||||||||||||||||||| ||||||||||| || || || ||
Sbjct: 22123778 tcaggaggcaaataagaggaacaacaactggctgccacctccatgggcacttgccgcaat 22123837

                                                 
Query: 332      ggctctccttggtttcaacgagtttatgacatt 364
                |||| ||||||| ||||||||||| ||||||||
Sbjct: 22123838 ggctatccttggattcaacgagttcatgacatt 22123870



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                            
Query: 379      tttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtacaactag 438
                |||||||||  ||||| ||||| |||||||| || || ||||||||||||||||| ||||
Sbjct: 22123971 tttacctgggagtcatatttgttgttttccttgttggaaaagccatgtgggtacagctag 22124030

                                             
Query: 439      acattgccaacgaattccgaaatggattt 467
                |||||||||| || |||| ||||||||||
Sbjct: 22124031 acattgccaaggagttccaaaatggattt 22124059



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>dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1112D09
          Length = 125920

 Score =  159 bits (80), Expect = 1e-35
 Identities = 140/160 (87%)
 Strand = Plus / Plus

                                                                         
Query: 13    tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72
             |||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 18744 tgaagttgctttctacaatggctgcaattcgattggatgaggatggtgacaacattgaga 18803

                                                                         
Query: 73    ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132
              ||| || |||||||||||||| ||  | || |||||||||||||||||||| || || |
Sbjct: 18804 acaccctgtcccttgctctagttgacacagcaaggccagggactacagataggagcatcc 18863

                                                     
Query: 133   aatcgcttgatccacttgcctccagttcatgggaaagggt 172
             ||||| | |||||||||||||| || ||||||||||||||
Sbjct: 18864 aatcgttcgatccacttgcctctagctcatgggaaagggt 18903



 Score =  109 bits (55), Expect = 8e-21
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                         
Query: 170   ggttccagaggagagaactttaatctcccctgtccagtgcaagtctctttggaggcaatt 229
             |||||||||||||| |||||||||  | |||||||||||||| ||| | |||||||||||
Sbjct: 19036 ggttccagaggagaaaactttaattacacctgtccagtgcaaatctttatggaggcaatt 19095

                                                            
Query: 230   taaagctgaaaccgagtataccgtcactcaagccatagctgctcagg 276
             ||| |||||||| || ||||| ||||| || ||||||||||||||||
Sbjct: 19096 taaggctgaaactgaatatactgtcacacaggccatagctgctcagg 19142



 Score =  105 bits (53), Expect = 1e-19
 Identities = 83/93 (89%)
 Strand = Plus / Plus

                                                                         
Query: 272   tcaggaagcaaacaagaggaacaacaactggctgcctcctccatgggcgctcgctgcgat 331
             |||||| ||||| ||||||||||||||||||||||| ||||||||||| || || || ||
Sbjct: 19264 tcaggaggcaaataagaggaacaacaactggctgccacctccatgggcacttgccgcaat 19323

                                              
Query: 332   ggctctccttggtttcaacgagtttatgacatt 364
             |||| ||||||| ||||||||||| ||||||||
Sbjct: 19324 ggctatccttggattcaacgagttcatgacatt 19356



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                         
Query: 379   tttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtacaactag 438
             |||||||||  ||||| ||||| |||||||| || || ||||||||||||||||| ||||
Sbjct: 19457 tttacctgggagtcatatttgttgttttccttgttggaaaagccatgtgggtacagctag 19516

                                          
Query: 439   acattgccaacgaattccgaaatggattt 467
             |||||||||| || |||| ||||||||||
Sbjct: 19517 acattgccaaggagttccaaaatggattt 19545



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>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence
          Length = 213888

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                         
Query: 294   aacaactggctgcctcctccatgggcgctcgctgcgatggctctccttggtttcaacgag 353
             ||||||||| |||| ||||||||||| ||  ||   |||| | ||||||| |||||| ||
Sbjct: 91631 aacaactggttgccacctccatgggcacttcctctaatggatatccttgggttcaacaag 91572

                               
Query: 354   tttatgacattactgagg 371
              |||||||||||||||||
Sbjct: 91571 cttatgacattactgagg 91554



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>ref|NM_112241.3| Arabidopsis thaliana RHD3 (ROOT HAIR DEFECTIVE 3) AT3G13870 (RHD3)
            transcript variant AT3G13870.1 mRNA, complete cds
          Length = 2910

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 289  ggaacaacaactggctgcctcctccatgggc 319
            |||| |||||||||||||| |||||||||||
Sbjct: 2166 ggaataacaactggctgccacctccatgggc 2196



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>ref|NM_202579.1| Arabidopsis thaliana RHD3 (ROOT HAIR DEFECTIVE 3) AT3G13870 (RHD3)
            transcript variant AT3G13870.2 mRNA, complete cds
          Length = 2914

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 289  ggaacaacaactggctgcctcctccatgggc 319
            |||| |||||||||||||| |||||||||||
Sbjct: 2170 ggaataacaactggctgccacctccatgggc 2200



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>gb|AY128801.1| Arabidopsis thaliana unknown protein (At3g13870) mRNA, complete cds
          Length = 2538

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 289  ggaacaacaactggctgcctcctccatgggc 319
            |||| |||||||||||||| |||||||||||
Sbjct: 2015 ggaataacaactggctgccacctccatgggc 2045



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>gb|AY092988.1| Arabidopsis thaliana unknown protein (At3g13870) mRNA, complete cds
          Length = 2829

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 289  ggaacaacaactggctgcctcctccatgggc 319
            |||| |||||||||||||| |||||||||||
Sbjct: 2105 ggaataacaactggctgccacctccatgggc 2135



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>dbj|AB028610.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MCP4
          Length = 38810

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 289   ggaacaacaactggctgcctcctccatgggc 319
             |||| |||||||||||||| |||||||||||
Sbjct: 30488 ggaataacaactggctgccacctccatgggc 30458



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>gb|U86081.1|ATU86081 Arabidopsis thaliana root hair defective 3 (RHD3) gene, complete cds
          Length = 5741

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 289  ggaacaacaactggctgcctcctccatgggc 319
            |||| |||||||||||||| |||||||||||
Sbjct: 5011 ggaataacaactggctgccacctccatgggc 5041



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>emb|Z29560.1|CEK03H1 Caenorhabditis elegans Cosmid K03H1, complete sequence
          Length = 34583

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 284   caagaggaacaacaactggct 304
             |||||||||||||||||||||
Sbjct: 27735 caagaggaacaacaactggct 27755



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>ref|NM_066810.1| Caenorhabditis elegans K03H1.11 (K03H1.11) mRNA, complete cds
          Length = 891

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 284 caagaggaacaacaactggct 304
           |||||||||||||||||||||
Sbjct: 826 caagaggaacaacaactggct 806



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>gb|AC093084.4| Homo sapiens BAC clone RP11-699O7 from 2, complete sequence
          Length = 167960

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 92    agtagatgctgctaggccagg 112
             |||||||||||||||||||||
Sbjct: 60013 agtagatgctgctaggccagg 59993



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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 289     ggaacaacaactggctgcct 308
               ||||||||||||||||||||
Sbjct: 3709405 ggaacaacaactggctgcct 3709424



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>gb|AC006465.2| Homo sapiens BAC clone RP11-438H20 from 7, complete sequence
          Length = 101768

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    gatgctgctaggccagggactaca 119
             ||||||||||| ||||||||||||
Sbjct: 72718 gatgctgctagtccagggactaca 72741



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>ref|XM_862493.1| PREDICTED: Canis familiaris similar to Hypothetical zinc finger
           protein KIAA1559, transcript variant 3 (LOC484560), mRNA
          Length = 2820

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 77  tctttcccttgctctagtag 96
           ||||||||||||||||||||
Sbjct: 173 tctttcccttgctctagtag 154



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>gb|AC109612.22| Mus musculus strain C57BL/6J clone rp23-37i3 map 17, complete sequence
          Length = 179382

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    caggaagcaaacaagaggaa 292
              ||||||||||||||||||||
Sbjct: 124528 caggaagcaaacaagaggaa 124509



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>emb|BX284686.9| Human DNA sequence from clone DASS-39F23 on chromosome 6, complete
            sequence
          Length = 80063

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   taccactctttcccttgctc 90
            ||||||||||||||||||||
Sbjct: 7264 taccactctttcccttgctc 7245



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>emb|AL662884.11| Human DNA sequence from clone XXbac-300A18 on chromosome 6 contains the
             5' end of the TNXB gene for tenascin XB (TNXB, XB, TNX,
             XBS, HXBL, TENX, TNXB1, TNXB2, TNXBS), the CREBL1 gene for
             cAMP responsive element binding protein-like 1 (CREBL1,
             G13, CREB-RP), the FKBPL gene for FK506 binding protein
             like (FKBPL, NG7, DIR1), the gene for chromosome 6 open
             reading frame  31 (C6orf31, NG5), a putative novel
             transcript, the PPT2 gene for palmitoyl-protein
             thioesterase 2 (PPT2, G14), the gene for chromosome 6 open
             reading frame 8 (C6orf8, NG3), the AGPAT1 gene for
             1-acylglycerol-3-phosphate O-acyltransferase 1
             (lysophosphatidic acid acyltransferase, alpha)
             (AGPAT1,G15, LPAATA, MGC5423, LPAAT-alpha), the RNF5 gene
             for ring finger protein 5 (RNF5, G16, NG2, RING5), the
             AGER gene for advanced glycosylation end product-specific
             receptor (AGER, RAGE), the PBX2 gene for pre-B-cell
             leukemia transcription factor 2 (PBX2, G17, HOX12,
             PBX2MHC), the C6orf9 gene for chromosome 6 open reading
             frame 9 (C6orf9, G18, NG1), the NOTCH4 gene for Notch
             homolog 4 (Drosophila) (NOTCH4, INT3, NOTCH3) and seven
             CpG islands, complete sequence
          Length = 137935

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    taccactctttcccttgctc 90
             ||||||||||||||||||||
Sbjct: 50574 taccactctttcccttgctc 50555



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>emb|AL627203.7| Human DNA sequence from clone RP11-446M5 on chromosome 1 Contains part
             of the COL11A1 gene for collagen type XI alpha 1, complete
             sequence
          Length = 68335

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    gatgctgctaggccagggactaca 119
             ||||||||| ||||||||||||||
Sbjct: 45314 gatgctgctgggccagggactaca 45337



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>emb|AL662828.5| Human DNA sequence from clone XXbac-105D18 on chromosome 6 contains the
             3' end of the CYP21A2 gene for cytochrome P450, subfamily
             XXIA (steroid 21-hydroxylase, congenital adrenal
             hyperplasia), polypeptide 2, the TNXB gene for tenascin
             XB, the CREBL1 gene for cAMP responsive element binding
             protein-like 1, the FKBPL gene for FK506 binding protein
             like, the gene for chromosome 6 open reading frame  31, a
             putative novel transcript, the PPT2 gene for
             palmitoyl-protein thioesterase 2, the gene for chromosome
             6 open reading frame 8, the AGPAT1 gene for
             1-acylglycerol-3-phosphate O-acyltransferase 1
             (lysophosphatidic acid acyltransferase, alpha) and six CpG
             islands, complete sequence
          Length = 138992

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    taccactctttcccttgctc 90
             ||||||||||||||||||||
Sbjct: 98365 taccactctttcccttgctc 98346



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>emb|AL035662.65|HS599F21 Human DNA sequence from clone RP4-599F21 on chromosome 20q12-13.12
             Contains the 5' end of the NCOA5 gene for nuclear receptor
             coactivator 5, the RPL13P2 gene for ribosomal protein L13
             pseudogene 2, the TNFRSF5 gene for tumor necrosis factor
             receptor superfamily member 5 and two CpG islands,
             complete sequence
          Length = 95283

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 96    gatgctgctaggccagggactaca 119
             ||||||||||| ||||||||||||
Sbjct: 33464 gatgctgctagtccagggactaca 33441



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>emb|CR933878.7| Human DNA sequence from clone DAMC-108L3 on chromosome 6, complete
            sequence
          Length = 102907

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   taccactctttcccttgctc 90
            ||||||||||||||||||||
Sbjct: 7644 taccactctttcccttgctc 7625



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>emb|CR812478.6| Human DNA sequence from clone DAAP-218M18 on chromosome 6, complete
            sequence
          Length = 75620

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   taccactctttcccttgctc 90
            ||||||||||||||||||||
Sbjct: 4816 taccactctttcccttgctc 4797



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>emb|CR753803.4| Human DNA sequence from clone DADB-220I18 on chromosome 6, complete
             sequence
          Length = 104677

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    taccactctttcccttgctc 90
             ||||||||||||||||||||
Sbjct: 82370 taccactctttcccttgctc 82351



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>gb|AC084452.1|AC084452 Caenorhabditis briggsae cosmid CB024D21, complete sequence
          Length = 93590

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 438   gacattgccaacgaattccg 457
             ||||||||||||||||||||
Sbjct: 55721 gacattgccaacgaattccg 55740



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>gb|AC006195.1|AC006195 Homo sapiens clone RP11-350H1 from 7p14-15, complete sequence
          Length = 150242

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   acaactggctgcctcctcca 314
             ||||||||||||||||||||
Sbjct: 86669 acaactggctgcctcctcca 86688



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>emb|AL596139.1|CNS07EGR BAC A of library A from Tetraodon nigroviridis, T-cell receptor alpha
             delta locus (germline)
          Length = 74861

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 273   caggaagcaaacaagaggaacaac 296
             |||||||||||||||||| |||||
Sbjct: 58038 caggaagcaaacaagaggtacaac 58061



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>gb|AC164541.3| Mus musculus chromosome 1, clone RP24-172N7, complete sequence
          Length = 161969

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 58    gtgacaacattgataccactctttccct 85
             ||||| ||| ||||||||||||||||||
Sbjct: 75393 gtgaccacaatgataccactctttccct 75366



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>gb|AC105073.16| Mus musculus chromosome 1, clone RP23-288J11, complete sequence
          Length = 210509

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 58    gtgacaacattgataccactctttccct 85
             ||||| ||| ||||||||||||||||||
Sbjct: 10511 gtgaccacaatgataccactctttccct 10538



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>emb|AL808026.10| Mouse DNA sequence from clone RP23-200N16 on chromosome X, complete
              sequence
          Length = 214016

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 130    ttcaatcgcttgatccacttgcctccag 157
              ||||||| |||||||| |||||||||||
Sbjct: 204878 ttcaatcccttgatcctcttgcctccag 204851


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,003,589
Number of Sequences: 3902068
Number of extensions: 4003589
Number of successful extensions: 91615
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91520
Number of HSP's gapped (non-prelim): 89
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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