| Clone Name | bags20h24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY557340.2| Triticum aestivum root hair defective 3 GTP-binding protein (wrsi2) mRNA, complete cds Length = 2800 Score = 807 bits (407), Expect = 0.0 Identities = 446/459 (97%) Strand = Plus / Plus Query: 13 tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1846 tgaagttgctttctacgatggctgcaattcggttggaagaagatggtgacaacattgata 1905 Query: 73 ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1906 ccactctttcccttgctctagtagatgctgcgaggccagggactacagatagaagtattc 1965 Query: 133 aatcgcttgatccacttgcctccagttcatgggaaagggttccagaggagagaactttaa 192 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1966 aatcgcttgatccactcgcctccagttcatgggaaagggttccagaggagagaactttaa 2025 Query: 193 tctcccctgtccagtgcaagtctctttggaggcaatttaaagctgaaaccgagtataccg 252 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 2026 tctcccctgtccagtgcaagtctctgtggaggcaatttaaagctgaaactgagtataccg 2085 Query: 253 tcactcaagccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctc 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2086 tcactcaagccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctc 2145 Query: 313 catgggcgctcgctgcgatggctctccttggtttcaacgagtttatgacattactgagga 372 ||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| Sbjct: 2146 catgggcgctcgctgcgatggctgtccttggtttcaatgagttcatgacattactgagga 2205 Query: 373 acccgttttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtac 432 |||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 2206 acccattttacctggccgtcatgtttgtagttttcctagtcgggaaagccatatgggtac 2265 Query: 433 aactagacattgccaacgaattccgaaatggatttcttc 471 |||||||||||||||| |||||||||||||||||||||| Sbjct: 2266 aactagacattgccaatgaattccgaaatggatttcttc 2304
>dbj|AK101859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069P18, full insert sequence Length = 2988 Score = 434 bits (219), Expect = e-118 Identities = 399/459 (86%) Strand = Plus / Plus Query: 13 tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72 |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| | Sbjct: 1862 tgaagttgctttctacaatggctgcaattcgattggatgaagatggtgacaacattgaga 1921 Query: 73 ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132 ||| || |||||||||||||| || | || |||||||||||||||||||| || || | Sbjct: 1922 acaccctgtcccttgctctagttgacacagcaaggccagggactacagataggagcatcc 1981 Query: 133 aatcgcttgatccacttgcctccagttcatgggaaagggttccagaggagagaactttaa 192 ||||| | |||||||||||||| || ||||||||||||||||||||||||| |||||||| Sbjct: 1982 aatcgttcgatccacttgcctctagctcatgggaaagggttccagaggagaaaactttaa 2041 Query: 193 tctcccctgtccagtgcaagtctctttggaggcaatttaaagctgaaaccgagtataccg 252 | | |||||||||||||| ||| | |||||||||||||| |||||||| || ||||| | Sbjct: 2042 ttacacctgtccagtgcaaatctttatggaggcaatttaaggctgaaactgaatatactg 2101 Query: 253 tcactcaagccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctc 312 |||| || ||||||||||||||||| ||||| ||||||||||||||||||||||| |||| Sbjct: 2102 tcacacaggccatagctgctcaggaggcaaataagaggaacaacaactggctgccacctc 2161 Query: 313 catgggcgctcgctgcgatggctctccttggtttcaacgagtttatgacattactgagga 372 ||||||| || || || |||||| ||||||| ||||||||||| |||||||| | | || Sbjct: 2162 catgggcacttgccgcaatggctatccttggattcaacgagttcatgacattgttaaaga 2221 Query: 373 acccgttttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtac 432 | || ||||||||| ||||| ||||| |||||||| || || |||||||||||||||| Sbjct: 2222 atcccctttacctgggagtcatatttgttgttttccttgttggaaaagccatgtgggtac 2281 Query: 433 aactagacattgccaacgaattccgaaatggatttcttc 471 | |||||||||||||| || |||| |||||||||||||| Sbjct: 2282 agctagacattgccaaggagttccaaaatggatttcttc 2320
>ref|NM_193615.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2421 Score = 426 bits (215), Expect = e-116 Identities = 398/459 (86%) Strand = Plus / Plus Query: 13 tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72 |||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| | Sbjct: 1736 tgaagttgctttctacaatggctgcaattcgattggatgaggatggtgacaacattgaga 1795 Query: 73 ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132 ||| || |||||||||||||| || | || |||||||||||||||||||| || || | Sbjct: 1796 acaccctgtcccttgctctagttgacacagcaaggccagggactacagataggagcatcc 1855 Query: 133 aatcgcttgatccacttgcctccagttcatgggaaagggttccagaggagagaactttaa 192 ||||| | |||||||||||||| || ||||||||||||||||||||||||| |||||||| Sbjct: 1856 aatcgttcgatccacttgcctctagctcatgggaaagggttccagaggagaaaactttaa 1915 Query: 193 tctcccctgtccagtgcaagtctctttggaggcaatttaaagctgaaaccgagtataccg 252 | | |||||||||||||| ||| | |||||||||||||| |||||||| || ||||| | Sbjct: 1916 ttacacctgtccagtgcaaatctttatggaggcaatttaaggctgaaactgaatatactg 1975 Query: 253 tcactcaagccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctc 312 |||| || ||||||||||||||||| ||||| ||||||||||||||||||||||| |||| Sbjct: 1976 tcacacaggccatagctgctcaggaggcaaataagaggaacaacaactggctgccacctc 2035 Query: 313 catgggcgctcgctgcgatggctctccttggtttcaacgagtttatgacattactgagga 372 ||||||| || || || |||||| ||||||| ||||||||||| |||||||| | | || Sbjct: 2036 catgggcacttgccgcaatggctatccttggattcaacgagttcatgacattgttaaaga 2095 Query: 373 acccgttttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtac 432 | || ||||||||| ||||| ||||| |||||||| || || |||||||||||||||| Sbjct: 2096 atcccctttacctgggagtcatatttgttgttttccttgttggaaaagccatgtgggtac 2155 Query: 433 aactagacattgccaacgaattccgaaatggatttcttc 471 | |||||||||||||| || |||| |||||||||||||| Sbjct: 2156 agctagacattgccaaggagttccaaaatggatttcttc 2194
>dbj|AK101558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050C19, full insert sequence Length = 2213 Score = 426 bits (215), Expect = e-116 Identities = 398/459 (86%) Strand = Plus / Plus Query: 13 tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72 |||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| | Sbjct: 1165 tgaagttgctttctacaatggctgcaattcgattggatgaggatggtgacaacattgaga 1224 Query: 73 ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132 ||| || |||||||||||||| || | || |||||||||||||||||||| || || | Sbjct: 1225 acaccctgtcccttgctctagttgacacagcaaggccagggactacagataggagcatcc 1284 Query: 133 aatcgcttgatccacttgcctccagttcatgggaaagggttccagaggagagaactttaa 192 ||||| | |||||||||||||| || ||||||||||||||||||||||||| |||||||| Sbjct: 1285 aatcgttcgatccacttgcctctagctcatgggaaagggttccagaggagaaaactttaa 1344 Query: 193 tctcccctgtccagtgcaagtctctttggaggcaatttaaagctgaaaccgagtataccg 252 | | |||||||||||||| ||| | |||||||||||||| |||||||| || ||||| | Sbjct: 1345 ttacacctgtccagtgcaaatctttatggaggcaatttaaggctgaaactgaatatactg 1404 Query: 253 tcactcaagccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctc 312 |||| || ||||||||||||||||| ||||| ||||||||||||||||||||||| |||| Sbjct: 1405 tcacacaggccatagctgctcaggaggcaaataagaggaacaacaactggctgccacctc 1464 Query: 313 catgggcgctcgctgcgatggctctccttggtttcaacgagtttatgacattactgagga 372 ||||||| || || || |||||| ||||||| ||||||||||| |||||||| | | || Sbjct: 1465 catgggcacttgccgcaatggctatccttggattcaacgagttcatgacattgttaaaga 1524 Query: 373 acccgttttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtac 432 | || ||||||||| ||||| ||||| |||||||| || || |||||||||||||||| Sbjct: 1525 atcccctttacctgggagtcatatttgttgttttccttgttggaaaagccatgtgggtac 1584 Query: 433 aactagacattgccaacgaattccgaaatggatttcttc 471 | |||||||||||||| || |||| |||||||||||||| Sbjct: 1585 agctagacattgccaaggagttccaaaatggatttcttc 1623
>dbj|AK070726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059E17, full insert sequence Length = 2994 Score = 418 bits (211), Expect = e-114 Identities = 397/459 (86%) Strand = Plus / Plus Query: 13 tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72 |||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| | Sbjct: 1905 tgaagttgctttctacaatggctgcaattcgattggatgaggatggtgacaacattgaga 1964 Query: 73 ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132 ||| || |||||||||||||| || | || |||||||||||||||||||| || || | Sbjct: 1965 acaccctgtcccttgctctagttgacacagcaaggccagggactacagataggagcatcc 2024 Query: 133 aatcgcttgatccacttgcctccagttcatgggaaagggttccagaggagagaactttaa 192 ||||| | |||||||||||||| || ||||||||||||||||||||||||| |||||||| Sbjct: 2025 aatcgttcgatccacttgcctctagctcatgggaaagggttccagaggagaaaactttaa 2084 Query: 193 tctcccctgtccagtgcaagtctctttggaggcaatttaaagctgaaaccgagtataccg 252 | | |||||||||||||| ||| | |||||||||||||| |||||| | || ||||| | Sbjct: 2085 ttacacctgtccagtgcaaatctttatggaggcaatttaaggctgaagctgaatatactg 2144 Query: 253 tcactcaagccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctc 312 |||| || ||||||||||||||||| ||||| ||||||||||||||||||||||| |||| Sbjct: 2145 tcacacaggccatagctgctcaggaggcaaataagaggaacaacaactggctgccacctc 2204 Query: 313 catgggcgctcgctgcgatggctctccttggtttcaacgagtttatgacattactgagga 372 ||||||| || || || |||||| ||||||| ||||||||||| |||||||| | | || Sbjct: 2205 catgggcacttgccgcaatggctatccttggattcaacgagttcatgacattgttaaaga 2264 Query: 373 acccgttttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtac 432 | || ||||||||| ||||| ||||| |||||||| || || |||||||||||||||| Sbjct: 2265 atcccctttacctgggagtcatatttgttgttttccttgttggaaaagccatgtgggtac 2324 Query: 433 aactagacattgccaacgaattccgaaatggatttcttc 471 | |||||||||||||| || |||| |||||||||||||| Sbjct: 2325 agctagacattgccaaggagttccaaaatggatttcttc 2363
>gb|AY104942.1| Zea mays PCO129434 mRNA sequence Length = 1061 Score = 250 bits (126), Expect = 4e-63 Identities = 216/246 (87%) Strand = Plus / Plus Query: 141 gatccacttgcctccagttcatgggaaagggttccagaggagagaactttaatctcccct 200 ||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||| Sbjct: 25 gatccacttgcctccagttcatgggaaagggttgccgaggagaagactttaattacccct 84 Query: 201 gtccagtgcaagtctctttggaggcaatttaaagctgaaaccgagtataccgtcactcaa 260 || |||||||| | | ||||||||||| || |||||||| || ||||| || |||||| Sbjct: 85 gtgcagtgcaaaaatttgtggaggcaattcaaggctgaaactgaatatacagtgactcaa 144 Query: 261 gccatagctgctcaggaagcaaacaagaggaacaacaactggctgcctcctccatgggcg 320 ||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||||| Sbjct: 145 gccttagctgctcaggaagcaaataagaggaacaacaactggctaccacctccatgggca 204 Query: 321 ctcgctgcgatggctctccttggtttcaacgagtttatgacattactgaggaacccgttt 380 || ||||| |||||| | ||||| ||||||||||| ||||||||||||||||||||| || Sbjct: 205 cttgctgcaatggctattcttggattcaacgagttcatgacattactgaggaacccgctt 264 Query: 381 tacctg 386 |||||| Sbjct: 265 tacctg 270
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 159 bits (80), Expect = 1e-35 Identities = 140/160 (87%) Strand = Plus / Plus Query: 13 tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72 |||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| | Sbjct: 22123258 tgaagttgctttctacaatggctgcaattcgattggatgaggatggtgacaacattgaga 22123317 Query: 73 ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132 ||| || |||||||||||||| || | || |||||||||||||||||||| || || | Sbjct: 22123318 acaccctgtcccttgctctagttgacacagcaaggccagggactacagataggagcatcc 22123377 Query: 133 aatcgcttgatccacttgcctccagttcatgggaaagggt 172 ||||| | |||||||||||||| || |||||||||||||| Sbjct: 22123378 aatcgttcgatccacttgcctctagctcatgggaaagggt 22123417 Score = 109 bits (55), Expect = 8e-21 Identities = 94/107 (87%) Strand = Plus / Plus Query: 170 ggttccagaggagagaactttaatctcccctgtccagtgcaagtctctttggaggcaatt 229 |||||||||||||| ||||||||| | |||||||||||||| ||| | ||||||||||| Sbjct: 22123550 ggttccagaggagaaaactttaattacacctgtccagtgcaaatctttatggaggcaatt 22123609 Query: 230 taaagctgaaaccgagtataccgtcactcaagccatagctgctcagg 276 ||| |||||||| || ||||| ||||| || |||||||||||||||| Sbjct: 22123610 taaggctgaaactgaatatactgtcacacaggccatagctgctcagg 22123656 Score = 105 bits (53), Expect = 1e-19 Identities = 83/93 (89%) Strand = Plus / Plus Query: 272 tcaggaagcaaacaagaggaacaacaactggctgcctcctccatgggcgctcgctgcgat 331 |||||| ||||| ||||||||||||||||||||||| ||||||||||| || || || || Sbjct: 22123778 tcaggaggcaaataagaggaacaacaactggctgccacctccatgggcacttgccgcaat 22123837 Query: 332 ggctctccttggtttcaacgagtttatgacatt 364 |||| ||||||| ||||||||||| |||||||| Sbjct: 22123838 ggctatccttggattcaacgagttcatgacatt 22123870 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 379 tttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtacaactag 438 ||||||||| ||||| ||||| |||||||| || || ||||||||||||||||| |||| Sbjct: 22123971 tttacctgggagtcatatttgttgttttccttgttggaaaagccatgtgggtacagctag 22124030 Query: 439 acattgccaacgaattccgaaatggattt 467 |||||||||| || |||| |||||||||| Sbjct: 22124031 acattgccaaggagttccaaaatggattt 22124059
>dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1112D09 Length = 125920 Score = 159 bits (80), Expect = 1e-35 Identities = 140/160 (87%) Strand = Plus / Plus Query: 13 tgaagttgctgtctacgatggctgcaattcggttggatgaagatggtgacaacattgata 72 |||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| | Sbjct: 18744 tgaagttgctttctacaatggctgcaattcgattggatgaggatggtgacaacattgaga 18803 Query: 73 ccactctttcccttgctctagtagatgctgctaggccagggactacagatagaagtattc 132 ||| || |||||||||||||| || | || |||||||||||||||||||| || || | Sbjct: 18804 acaccctgtcccttgctctagttgacacagcaaggccagggactacagataggagcatcc 18863 Query: 133 aatcgcttgatccacttgcctccagttcatgggaaagggt 172 ||||| | |||||||||||||| || |||||||||||||| Sbjct: 18864 aatcgttcgatccacttgcctctagctcatgggaaagggt 18903 Score = 109 bits (55), Expect = 8e-21 Identities = 94/107 (87%) Strand = Plus / Plus Query: 170 ggttccagaggagagaactttaatctcccctgtccagtgcaagtctctttggaggcaatt 229 |||||||||||||| ||||||||| | |||||||||||||| ||| | ||||||||||| Sbjct: 19036 ggttccagaggagaaaactttaattacacctgtccagtgcaaatctttatggaggcaatt 19095 Query: 230 taaagctgaaaccgagtataccgtcactcaagccatagctgctcagg 276 ||| |||||||| || ||||| ||||| || |||||||||||||||| Sbjct: 19096 taaggctgaaactgaatatactgtcacacaggccatagctgctcagg 19142 Score = 105 bits (53), Expect = 1e-19 Identities = 83/93 (89%) Strand = Plus / Plus Query: 272 tcaggaagcaaacaagaggaacaacaactggctgcctcctccatgggcgctcgctgcgat 331 |||||| ||||| ||||||||||||||||||||||| ||||||||||| || || || || Sbjct: 19264 tcaggaggcaaataagaggaacaacaactggctgccacctccatgggcacttgccgcaat 19323 Query: 332 ggctctccttggtttcaacgagtttatgacatt 364 |||| ||||||| ||||||||||| |||||||| Sbjct: 19324 ggctatccttggattcaacgagttcatgacatt 19356 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 379 tttacctggccgtcatttttgtagttttcctagtcgggaaagccatgtgggtacaactag 438 ||||||||| ||||| ||||| |||||||| || || ||||||||||||||||| |||| Sbjct: 19457 tttacctgggagtcatatttgttgttttccttgttggaaaagccatgtgggtacagctag 19516 Query: 439 acattgccaacgaattccgaaatggattt 467 |||||||||| || |||| |||||||||| Sbjct: 19517 acattgccaaggagttccaaaatggattt 19545
>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence Length = 213888 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 294 aacaactggctgcctcctccatgggcgctcgctgcgatggctctccttggtttcaacgag 353 ||||||||| |||| ||||||||||| || || |||| | ||||||| |||||| || Sbjct: 91631 aacaactggttgccacctccatgggcacttcctctaatggatatccttgggttcaacaag 91572 Query: 354 tttatgacattactgagg 371 ||||||||||||||||| Sbjct: 91571 cttatgacattactgagg 91554
>ref|NM_112241.3| Arabidopsis thaliana RHD3 (ROOT HAIR DEFECTIVE 3) AT3G13870 (RHD3) transcript variant AT3G13870.1 mRNA, complete cds Length = 2910 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 289 ggaacaacaactggctgcctcctccatgggc 319 |||| |||||||||||||| ||||||||||| Sbjct: 2166 ggaataacaactggctgccacctccatgggc 2196
>ref|NM_202579.1| Arabidopsis thaliana RHD3 (ROOT HAIR DEFECTIVE 3) AT3G13870 (RHD3) transcript variant AT3G13870.2 mRNA, complete cds Length = 2914 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 289 ggaacaacaactggctgcctcctccatgggc 319 |||| |||||||||||||| ||||||||||| Sbjct: 2170 ggaataacaactggctgccacctccatgggc 2200
>gb|AY128801.1| Arabidopsis thaliana unknown protein (At3g13870) mRNA, complete cds Length = 2538 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 289 ggaacaacaactggctgcctcctccatgggc 319 |||| |||||||||||||| ||||||||||| Sbjct: 2015 ggaataacaactggctgccacctccatgggc 2045
>gb|AY092988.1| Arabidopsis thaliana unknown protein (At3g13870) mRNA, complete cds Length = 2829 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 289 ggaacaacaactggctgcctcctccatgggc 319 |||| |||||||||||||| ||||||||||| Sbjct: 2105 ggaataacaactggctgccacctccatgggc 2135
>dbj|AB028610.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MCP4 Length = 38810 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 289 ggaacaacaactggctgcctcctccatgggc 319 |||| |||||||||||||| ||||||||||| Sbjct: 30488 ggaataacaactggctgccacctccatgggc 30458
>gb|U86081.1|ATU86081 Arabidopsis thaliana root hair defective 3 (RHD3) gene, complete cds Length = 5741 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 289 ggaacaacaactggctgcctcctccatgggc 319 |||| |||||||||||||| ||||||||||| Sbjct: 5011 ggaataacaactggctgccacctccatgggc 5041
>emb|Z29560.1|CEK03H1 Caenorhabditis elegans Cosmid K03H1, complete sequence Length = 34583 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 caagaggaacaacaactggct 304 ||||||||||||||||||||| Sbjct: 27735 caagaggaacaacaactggct 27755
>ref|NM_066810.1| Caenorhabditis elegans K03H1.11 (K03H1.11) mRNA, complete cds Length = 891 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 caagaggaacaacaactggct 304 ||||||||||||||||||||| Sbjct: 826 caagaggaacaacaactggct 806
>gb|AC093084.4| Homo sapiens BAC clone RP11-699O7 from 2, complete sequence Length = 167960 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 agtagatgctgctaggccagg 112 ||||||||||||||||||||| Sbjct: 60013 agtagatgctgctaggccagg 59993
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ggaacaacaactggctgcct 308 |||||||||||||||||||| Sbjct: 3709405 ggaacaacaactggctgcct 3709424
>gb|AC006465.2| Homo sapiens BAC clone RP11-438H20 from 7, complete sequence Length = 101768 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 gatgctgctaggccagggactaca 119 ||||||||||| |||||||||||| Sbjct: 72718 gatgctgctagtccagggactaca 72741
>ref|XM_862493.1| PREDICTED: Canis familiaris similar to Hypothetical zinc finger protein KIAA1559, transcript variant 3 (LOC484560), mRNA Length = 2820 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 tctttcccttgctctagtag 96 |||||||||||||||||||| Sbjct: 173 tctttcccttgctctagtag 154
>gb|AC109612.22| Mus musculus strain C57BL/6J clone rp23-37i3 map 17, complete sequence Length = 179382 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 caggaagcaaacaagaggaa 292 |||||||||||||||||||| Sbjct: 124528 caggaagcaaacaagaggaa 124509
>emb|BX284686.9| Human DNA sequence from clone DASS-39F23 on chromosome 6, complete sequence Length = 80063 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 taccactctttcccttgctc 90 |||||||||||||||||||| Sbjct: 7264 taccactctttcccttgctc 7245
>emb|AL662884.11| Human DNA sequence from clone XXbac-300A18 on chromosome 6 contains the 5' end of the TNXB gene for tenascin XB (TNXB, XB, TNX, XBS, HXBL, TENX, TNXB1, TNXB2, TNXBS), the CREBL1 gene for cAMP responsive element binding protein-like 1 (CREBL1, G13, CREB-RP), the FKBPL gene for FK506 binding protein like (FKBPL, NG7, DIR1), the gene for chromosome 6 open reading frame 31 (C6orf31, NG5), a putative novel transcript, the PPT2 gene for palmitoyl-protein thioesterase 2 (PPT2, G14), the gene for chromosome 6 open reading frame 8 (C6orf8, NG3), the AGPAT1 gene for 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) (AGPAT1,G15, LPAATA, MGC5423, LPAAT-alpha), the RNF5 gene for ring finger protein 5 (RNF5, G16, NG2, RING5), the AGER gene for advanced glycosylation end product-specific receptor (AGER, RAGE), the PBX2 gene for pre-B-cell leukemia transcription factor 2 (PBX2, G17, HOX12, PBX2MHC), the C6orf9 gene for chromosome 6 open reading frame 9 (C6orf9, G18, NG1), the NOTCH4 gene for Notch homolog 4 (Drosophila) (NOTCH4, INT3, NOTCH3) and seven CpG islands, complete sequence Length = 137935 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 taccactctttcccttgctc 90 |||||||||||||||||||| Sbjct: 50574 taccactctttcccttgctc 50555
>emb|AL627203.7| Human DNA sequence from clone RP11-446M5 on chromosome 1 Contains part of the COL11A1 gene for collagen type XI alpha 1, complete sequence Length = 68335 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 gatgctgctaggccagggactaca 119 ||||||||| |||||||||||||| Sbjct: 45314 gatgctgctgggccagggactaca 45337
>emb|AL662828.5| Human DNA sequence from clone XXbac-105D18 on chromosome 6 contains the 3' end of the CYP21A2 gene for cytochrome P450, subfamily XXIA (steroid 21-hydroxylase, congenital adrenal hyperplasia), polypeptide 2, the TNXB gene for tenascin XB, the CREBL1 gene for cAMP responsive element binding protein-like 1, the FKBPL gene for FK506 binding protein like, the gene for chromosome 6 open reading frame 31, a putative novel transcript, the PPT2 gene for palmitoyl-protein thioesterase 2, the gene for chromosome 6 open reading frame 8, the AGPAT1 gene for 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) and six CpG islands, complete sequence Length = 138992 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 taccactctttcccttgctc 90 |||||||||||||||||||| Sbjct: 98365 taccactctttcccttgctc 98346
>emb|AL035662.65|HS599F21 Human DNA sequence from clone RP4-599F21 on chromosome 20q12-13.12 Contains the 5' end of the NCOA5 gene for nuclear receptor coactivator 5, the RPL13P2 gene for ribosomal protein L13 pseudogene 2, the TNFRSF5 gene for tumor necrosis factor receptor superfamily member 5 and two CpG islands, complete sequence Length = 95283 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 gatgctgctaggccagggactaca 119 ||||||||||| |||||||||||| Sbjct: 33464 gatgctgctagtccagggactaca 33441
>emb|CR933878.7| Human DNA sequence from clone DAMC-108L3 on chromosome 6, complete sequence Length = 102907 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 taccactctttcccttgctc 90 |||||||||||||||||||| Sbjct: 7644 taccactctttcccttgctc 7625
>emb|CR812478.6| Human DNA sequence from clone DAAP-218M18 on chromosome 6, complete sequence Length = 75620 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 taccactctttcccttgctc 90 |||||||||||||||||||| Sbjct: 4816 taccactctttcccttgctc 4797
>emb|CR753803.4| Human DNA sequence from clone DADB-220I18 on chromosome 6, complete sequence Length = 104677 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 taccactctttcccttgctc 90 |||||||||||||||||||| Sbjct: 82370 taccactctttcccttgctc 82351
>gb|AC084452.1|AC084452 Caenorhabditis briggsae cosmid CB024D21, complete sequence Length = 93590 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 gacattgccaacgaattccg 457 |||||||||||||||||||| Sbjct: 55721 gacattgccaacgaattccg 55740
>gb|AC006195.1|AC006195 Homo sapiens clone RP11-350H1 from 7p14-15, complete sequence Length = 150242 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 acaactggctgcctcctcca 314 |||||||||||||||||||| Sbjct: 86669 acaactggctgcctcctcca 86688
>emb|AL596139.1|CNS07EGR BAC A of library A from Tetraodon nigroviridis, T-cell receptor alpha delta locus (germline) Length = 74861 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 caggaagcaaacaagaggaacaac 296 |||||||||||||||||| ||||| Sbjct: 58038 caggaagcaaacaagaggtacaac 58061
>gb|AC164541.3| Mus musculus chromosome 1, clone RP24-172N7, complete sequence Length = 161969 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 58 gtgacaacattgataccactctttccct 85 ||||| ||| |||||||||||||||||| Sbjct: 75393 gtgaccacaatgataccactctttccct 75366
>gb|AC105073.16| Mus musculus chromosome 1, clone RP23-288J11, complete sequence Length = 210509 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 58 gtgacaacattgataccactctttccct 85 ||||| ||| |||||||||||||||||| Sbjct: 10511 gtgaccacaatgataccactctttccct 10538
>emb|AL808026.10| Mouse DNA sequence from clone RP23-200N16 on chromosome X, complete sequence Length = 214016 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 130 ttcaatcgcttgatccacttgcctccag 157 ||||||| |||||||| ||||||||||| Sbjct: 204878 ttcaatcccttgatcctcttgcctccag 204851 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,003,589 Number of Sequences: 3902068 Number of extensions: 4003589 Number of successful extensions: 91615 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91520 Number of HSP's gapped (non-prelim): 89 length of query: 471 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 449 effective length of database: 17,147,199,772 effective search space: 7699092697628 effective search space used: 7699092697628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)