ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags20h17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191878.1| Oryza sativa (japonica cultivar-group), predic... 167 5e-38
2dbj|AK064757.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 5e-38
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 143 8e-31
4dbj|AP003142.2| Oryza sativa (japonica cultivar-group) genomic D... 143 8e-31
5dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic D... 143 8e-31
6ref|XM_959869.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.53
7ref|XM_330538.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.53
8gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 42 2.1
9gb|AC074259.14| Trypanosoma brucei chromosome 6 clone RPCI93-4M1... 42 2.1
10gb|AC013353.9| Trypanosoma brucei chromosome 6 clone RPCI93-28P1... 42 2.1
11ref|XM_821606.1| Trypanosoma brucei TREU927 clone RPCI93-4M18 hy... 42 2.1
12gb|AC123851.4| Mus musculus BAC clone RP23-323K4 from chromosome... 42 2.1
13emb|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segme... 42 2.1
14gb|AY678298.1| Lycopersicon esculentum clone 56B23 chromosome 6,... 42 2.1
15ref|NM_204128.1| Gallus gallus runt-related transcription factor... 40 8.2
16emb|AL591686.10| Human DNA sequence from clone RP11-561I11 on ch... 40 8.2
17emb|AL445437.4| Human DNA sequence from clone RP11-60A14 on chro... 40 8.2
18gb|AC144905.10| Mus musculus chromosome 1, clone RP23-293I7, com... 40 8.2
19gb|AF445419.1| Gallus gallus transcription factor RUNX2/CBFA1 mR... 40 8.2
20gb|AC090094.5| Homo sapiens chromosome 8, clone RP11-252C19, com... 40 8.2
21gb|AF450085.1|AF450085 Gallus gallus transcription factor RUNX2 ... 40 8.2
22gb|AC025133.6| Homo sapiens chromosome 8, clone RP11-227F6, comp... 40 8.2
23gb|AC026421.4| Homo sapiens chromosome 5 clone CTD-2127O16, comp... 40 8.2
24gb|AY008287.1| Gallus gallus core binding factor alpha 1 (CBFA1)... 40 8.2
25gb|AC015600.8| Homo sapiens chromosome 11, clone RP11-45C5, comp... 40 8.2
26gb|AC162175.10| Mus musculus chromosome 7, clone RP23-327E18, co... 40 8.2 
>ref|NM_191878.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1335

 Score =  167 bits (84), Expect = 5e-38
 Identities = 210/252 (83%)
 Strand = Plus / Plus

                                                                        
Query: 177  tacatcaactggtttatgcagctgctcaaggtgttcccttgcttggagacgatctacatc 236
            |||||||| ||||| |||||||| |||||| ||||||||||| | || ||| ||||||||
Sbjct: 886  tacatcaattggttcatgcagctcctcaagctgttcccttgcctagaaacgctctacatc 945

                                                                        
Query: 237  aagtcggactcttggtctgaggctcgtgacggctccccgggatcatgggacgtcctggca 296
            | ||| ||| |||||||  |||  || | ||   | ||||| || |||||||| |||  |
Sbjct: 946  aggtcagacacttggtccaaggtccgcgccgcggcaccggggtcctgggacgtgctgaga 1005

                                                                        
Query: 297  tccgttccttgcatcgacaaccacctcgagaaggtggtgttcgaagtttaccgagggcag 356
            || || || ||||||||||||||||| |||| ||||||||| || |||||||| ||||| 
Sbjct: 1006 tctgtcccctgcatcgacaaccaccttgagagggtggtgtttgaggtttaccgggggcac 1065

                                                                        
Query: 357  gagtggcagagggacatggccaagttccttcacgggaggagcaggttcctcaagaccatg 416
            |||||||||||||| ||||||||||| || ||||| |||  ||||||||||||| |||||
Sbjct: 1066 gagtggcagagggagatggccaagtttctccacggcagggccaggttcctcaaggccatg 1125

                        
Query: 417  gagttccactgc 428
            ||||||||||||
Sbjct: 1126 gagttccactgc 1137



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                        
Query: 470  tgaacaatgggtgaggaagcagcaggagctcttgtgcctcgacagccgggccgccagaga 529
            |||| ||||||| ||| |||||||||||||  |||||||||||||||||||  ||   ||
Sbjct: 1170 tgaagaatgggtcagggagcagcaggagctactgtgcctcgacagccgggcatccttgga 1229

                                  
Query: 530  tgctcgtttcctcttcttcaag 551
             |||||||||||||||||||||
Sbjct: 1230 cgctcgtttcctcttcttcaag 1251



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 1   acgcgccgaagctggagttcttaggctacctcggcatga 39
           |||| ||||||||||||||||| ||||||||||||||||
Sbjct: 731 acgcaccgaagctggagttcttgggctacctcggcatga 769
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>dbj|AK064757.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-G10, full
            insert sequence
          Length = 1527

 Score =  167 bits (84), Expect = 5e-38
 Identities = 210/252 (83%)
 Strand = Plus / Plus

                                                                        
Query: 177  tacatcaactggtttatgcagctgctcaaggtgttcccttgcttggagacgatctacatc 236
            |||||||| ||||| |||||||| |||||| ||||||||||| | || ||| ||||||||
Sbjct: 946  tacatcaattggttcatgcagctcctcaagctgttcccttgcctagaaacgctctacatc 1005

                                                                        
Query: 237  aagtcggactcttggtctgaggctcgtgacggctccccgggatcatgggacgtcctggca 296
            | ||| ||| |||||||  |||  || | ||   | ||||| || |||||||| |||  |
Sbjct: 1006 aggtcagacacttggtccaaggtccgcgccgcggcaccggggtcctgggacgtgctgaga 1065

                                                                        
Query: 297  tccgttccttgcatcgacaaccacctcgagaaggtggtgttcgaagtttaccgagggcag 356
            || || || ||||||||||||||||| |||| ||||||||| || |||||||| ||||| 
Sbjct: 1066 tctgtcccctgcatcgacaaccaccttgagagggtggtgtttgaggtttaccgggggcac 1125

                                                                        
Query: 357  gagtggcagagggacatggccaagttccttcacgggaggagcaggttcctcaagaccatg 416
            |||||||||||||| ||||||||||| || ||||| |||  ||||||||||||| |||||
Sbjct: 1126 gagtggcagagggagatggccaagtttctccacggcagggccaggttcctcaaggccatg 1185

                        
Query: 417  gagttccactgc 428
            ||||||||||||
Sbjct: 1186 gagttccactgc 1197



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                        
Query: 470  tgaacaatgggtgaggaagcagcaggagctcttgtgcctcgacagccgggccgccagaga 529
            |||| ||||||| ||| |||||||||||||  |||||||||||||||||||  ||   ||
Sbjct: 1230 tgaagaatgggtcagggagcagcaggagctactgtgcctcgacagccgggcatccttgga 1289

                                  
Query: 530  tgctcgtttcctcttcttcaag 551
             |||||||||||||||||||||
Sbjct: 1290 cgctcgtttcctcttcttcaag 1311



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 1   acgcgccgaagctggagttcttaggctacctcggcatga 39
           |||| ||||||||||||||||| ||||||||||||||||
Sbjct: 791 acgcaccgaagctggagttcttgggctacctcggcatga 829
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  143 bits (72), Expect = 8e-31
 Identities = 135/156 (86%)
 Strand = Plus / Minus

                                                                            
Query: 273      ccgggatcatgggacgtcctggcatccgttccttgcatcgacaaccacctcgagaaggtg 332
                ||||| || |||||||| |||  ||| || || ||||||||||||||||| |||| ||||
Sbjct: 30441170 ccggggtcctgggacgtgctgagatctgtcccctgcatcgacaaccaccttgagagggtg 30441111

                                                                            
Query: 333      gtgttcgaagtttaccgagggcaggagtggcagagggacatggccaagttccttcacggg 392
                ||||| || |||||||| ||||| |||||||||||||| ||||||||||| || ||||| 
Sbjct: 30441110 gtgtttgaggtttaccgggggcacgagtggcagagggagatggccaagtttctccacggc 30441051

                                                    
Query: 393      aggagcaggttcctcaagaccatggagttccactgc 428
                |||  ||||||||||||| |||||||||||||||||
Sbjct: 30441050 agggccaggttcctcaaggccatggagttccactgc 30441015



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                            
Query: 470      tgaacaatgggtgaggaagcagcaggagctcttgtgcctcgacagccgggccgccagaga 529
                |||| ||||||| ||| |||||||||||||  |||||||||||||||||||  ||   ||
Sbjct: 30440982 tgaagaatgggtcagggagcagcaggagctactgtgcctcgacagccgggcatccttgga 30440923

                                      
Query: 530      tgctcgtttcctcttcttcaag 551
                 |||||||||||||||||||||
Sbjct: 30440922 cgctcgtttcctcttcttcaag 30440901



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 1        acgcgccgaagctggagttcttaggctacctcggcatga 39
                |||| ||||||||||||||||| ||||||||||||||||
Sbjct: 30441674 acgcaccgaagctggagttcttgggctacctcggcatga 30441636



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                            
Query: 177      tacatcaactggtttatgcagctgctcaaggtgttcccttgcttggagacgatctacatc 236
                |||||||| ||||| |||||||| |||||| ||||||||||| | || ||| ||||||||
Sbjct: 30441385 tacatcaattggttcatgcagctcctcaagctgttcccttgcctagaaacgctctacatc 30441326

                 
Query: 237      a 237
                |
Sbjct: 30441325 a 30441325
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>dbj|AP003142.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0435H01
          Length = 160141

 Score =  143 bits (72), Expect = 8e-31
 Identities = 135/156 (86%)
 Strand = Plus / Minus

                                                                         
Query: 273   ccgggatcatgggacgtcctggcatccgttccttgcatcgacaaccacctcgagaaggtg 332
             ||||| || |||||||| |||  ||| || || ||||||||||||||||| |||| ||||
Sbjct: 69433 ccggggtcctgggacgtgctgagatctgtcccctgcatcgacaaccaccttgagagggtg 69374

                                                                         
Query: 333   gtgttcgaagtttaccgagggcaggagtggcagagggacatggccaagttccttcacggg 392
             ||||| || |||||||| ||||| |||||||||||||| ||||||||||| || ||||| 
Sbjct: 69373 gtgtttgaggtttaccgggggcacgagtggcagagggagatggccaagtttctccacggc 69314

                                                 
Query: 393   aggagcaggttcctcaagaccatggagttccactgc 428
             |||  ||||||||||||| |||||||||||||||||
Sbjct: 69313 agggccaggttcctcaaggccatggagttccactgc 69278



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                         
Query: 470   tgaacaatgggtgaggaagcagcaggagctcttgtgcctcgacagccgggccgccagaga 529
             |||| ||||||| ||| |||||||||||||  |||||||||||||||||||  ||   ||
Sbjct: 69245 tgaagaatgggtcagggagcagcaggagctactgtgcctcgacagccgggcatccttgga 69186

                                   
Query: 530   tgctcgtttcctcttcttcaag 551
              |||||||||||||||||||||
Sbjct: 69185 cgctcgtttcctcttcttcaag 69164



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 1     acgcgccgaagctggagttcttaggctacctcggcatga 39
             |||| ||||||||||||||||| ||||||||||||||||
Sbjct: 69937 acgcaccgaagctggagttcttgggctacctcggcatga 69899



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                         
Query: 177   tacatcaactggtttatgcagctgctcaaggtgttcccttgcttggagacgatctacatc 236
             |||||||| ||||| |||||||| |||||| ||||||||||| | || ||| ||||||||
Sbjct: 69648 tacatcaattggttcatgcagctcctcaagctgttcccttgcctagaaacgctctacatc 69589

              
Query: 237   a 237
             |
Sbjct: 69588 a 69588
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>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0456A01
          Length = 143710

 Score =  143 bits (72), Expect = 8e-31
 Identities = 135/156 (86%)
 Strand = Plus / Minus

                                                                          
Query: 273    ccgggatcatgggacgtcctggcatccgttccttgcatcgacaaccacctcgagaaggtg 332
              ||||| || |||||||| |||  ||| || || ||||||||||||||||| |||| ||||
Sbjct: 126897 ccggggtcctgggacgtgctgagatctgtcccctgcatcgacaaccaccttgagagggtg 126838

                                                                          
Query: 333    gtgttcgaagtttaccgagggcaggagtggcagagggacatggccaagttccttcacggg 392
              ||||| || |||||||| ||||| |||||||||||||| ||||||||||| || ||||| 
Sbjct: 126837 gtgtttgaggtttaccgggggcacgagtggcagagggagatggccaagtttctccacggc 126778

                                                  
Query: 393    aggagcaggttcctcaagaccatggagttccactgc 428
              |||  ||||||||||||| |||||||||||||||||
Sbjct: 126777 agggccaggttcctcaaggccatggagttccactgc 126742



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                          
Query: 470    tgaacaatgggtgaggaagcagcaggagctcttgtgcctcgacagccgggccgccagaga 529
              |||| ||||||| ||| |||||||||||||  |||||||||||||||||||  ||   ||
Sbjct: 126709 tgaagaatgggtcagggagcagcaggagctactgtgcctcgacagccgggcatccttgga 126650

                                    
Query: 530    tgctcgtttcctcttcttcaag 551
               |||||||||||||||||||||
Sbjct: 126649 cgctcgtttcctcttcttcaag 126628



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 1      acgcgccgaagctggagttcttaggctacctcggcatga 39
              |||| ||||||||||||||||| ||||||||||||||||
Sbjct: 127401 acgcaccgaagctggagttcttgggctacctcggcatga 127363



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                          
Query: 177    tacatcaactggtttatgcagctgctcaaggtgttcccttgcttggagacgatctacatc 236
              |||||||| ||||| |||||||| |||||| ||||||||||| | || ||| ||||||||
Sbjct: 127112 tacatcaattggttcatgcagctcctcaagctgttcccttgcctagaaacgctctacatc 127053

               
Query: 237    a 237
              |
Sbjct: 127052 a 127052
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>ref|XM_959869.1| Neurospora crassa OR74A hypothetical protein (NCU03103.1) partial
            mRNA
          Length = 4452

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 483  aggaagcagcaggagctcttgt 504
            ||||||||||||||||||||||
Sbjct: 3316 aggaagcagcaggagctcttgt 3337
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>ref|XM_330538.1| Neurospora crassa OR74A hypothetical protein (NCU03103.1) partial
            mRNA
          Length = 4452

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 483  aggaagcagcaggagctcttgt 504
            ||||||||||||||||||||||
Sbjct: 3316 aggaagcagcaggagctcttgt 3337
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 193    tgcagctgctcaaggtgttcc 213
              |||||||||||||||||||||
Sbjct: 648474 tgcagctgctcaaggtgttcc 648494
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>gb|AC074259.14| Trypanosoma brucei chromosome 6 clone RPCI93-4M18, complete sequence
          Length = 160865

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 193  tgcagctgctcaaggtgttcc 213
            |||||||||||||||||||||
Sbjct: 7050 tgcagctgctcaaggtgttcc 7070
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>gb|AC013353.9| Trypanosoma brucei chromosome 6 clone RPCI93-28P18, complete sequence
          Length = 149023

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 193    tgcagctgctcaaggtgttcc 213
              |||||||||||||||||||||
Sbjct: 140934 tgcagctgctcaaggtgttcc 140954
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>ref|XM_821606.1| Trypanosoma brucei TREU927 clone RPCI93-4M18 hypothetical protein
           (Tb927.6.1980) partial mRNA
          Length = 1752

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 193 tgcagctgctcaaggtgttcc 213
           |||||||||||||||||||||
Sbjct: 845 tgcagctgctcaaggtgttcc 825
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>gb|AC123851.4| Mus musculus BAC clone RP23-323K4 from chromosome 16, complete sequence
          Length = 230221

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 455   tggcagggctcctcctgaaca 475
             |||||||||||||||||||||
Sbjct: 62413 tggcagggctcctcctgaaca 62433
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>emb|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6
          Length = 307120

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 103    aaaccattatgccaagcctca 123
              |||||||||||||||||||||
Sbjct: 290223 aaaccattatgccaagcctca 290203
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>gb|AY678298.1| Lycopersicon esculentum clone 56B23 chromosome 6, genomic sequence
          Length = 198768

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 59    aaacaccaagttcaccaatttcaggaaaatgaatatt 95
             ||||||||| || || ||||||| |||||||||||||
Sbjct: 49552 aaacaccaacttgacaaatttcaagaaaatgaatatt 49516
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>ref|NM_204128.1| Gallus gallus runt-related transcription factor 2 (RUNX2), mRNA
          Length = 1420

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 351 gggcaggagtggcagaggga 370
           ||||||||||||||||||||
Sbjct: 483 gggcaggagtggcagaggga 502
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>emb|AL591686.10| Human DNA sequence from clone RP11-561I11 on chromosome 1 Contains the
             3' end of a novel gene (FLJ40773) and two novel genes,
             complete sequence
          Length = 175463

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   gcagctgctcaaggtgttcc 213
             ||||||||||||||||||||
Sbjct: 68350 gcagctgctcaaggtgttcc 68369
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>emb|AL445437.4| Human DNA sequence from clone RP11-60A14 on chromosome 1 Contains
            STSs and GSSs, complete sequence
          Length = 102094

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 537  ttcctcttcttcaagagtcagctc 560
            ||||| ||||||||||||||||||
Sbjct: 9483 ttcctattcttcaagagtcagctc 9506
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>gb|AC144905.10| Mus musculus chromosome 1, clone RP23-293I7, complete sequence
          Length = 215928

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   tggcagagggacatggccaa 379
             ||||||||||||||||||||
Sbjct: 87743 tggcagagggacatggccaa 87724
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>gb|AF445419.1| Gallus gallus transcription factor RUNX2/CBFA1 mRNA, complete cds
          Length = 1419

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 351 gggcaggagtggcagaggga 370
           ||||||||||||||||||||
Sbjct: 483 gggcaggagtggcagaggga 502
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>gb|AC090094.5| Homo sapiens chromosome 8, clone RP11-252C19, complete sequence
          Length = 158404

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 391    ggaggagcaggttcctcaag 410
              ||||||||||||||||||||
Sbjct: 118412 ggaggagcaggttcctcaag 118393
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>gb|AF450085.1|AF450085 Gallus gallus transcription factor RUNX2 mRNA, complete cds
          Length = 1420

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 351 gggcaggagtggcagaggga 370
           ||||||||||||||||||||
Sbjct: 483 gggcaggagtggcagaggga 502
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>gb|AC025133.6| Homo sapiens chromosome 8, clone RP11-227F6, complete sequence
          Length = 161644

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 391    ggaggagcaggttcctcaag 410
              ||||||||||||||||||||
Sbjct: 160038 ggaggagcaggttcctcaag 160057
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>gb|AC026421.4| Homo sapiens chromosome 5 clone CTD-2127O16, complete sequence
          Length = 170355

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    accaatttcaggaaaatgaa 91
             ||||||||||||||||||||
Sbjct: 36308 accaatttcaggaaaatgaa 36327
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>gb|AY008287.1| Gallus gallus core binding factor alpha 1 (CBFA1) mRNA, partial cds
          Length = 914

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 351 gggcaggagtggcagaggga 370
           ||||||||||||||||||||
Sbjct: 687 gggcaggagtggcagaggga 706
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>gb|AC015600.8| Homo sapiens chromosome 11, clone RP11-45C5, complete sequence
          Length = 154158

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   gtggcagagggacatggcca 378
             ||||||||||||||||||||
Sbjct: 47880 gtggcagagggacatggcca 47861
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>gb|AC162175.10| Mus musculus chromosome 7, clone RP23-327E18, complete sequence
          Length = 224178

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    agggcaggagtggcagaggg 369
              ||||||||||||||||||||
Sbjct: 147906 agggcaggagtggcagaggg 147925


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,938,490
Number of Sequences: 3902068
Number of extensions: 4938490
Number of successful extensions: 88316
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88222
Number of HSP's gapped (non-prelim): 89
length of query: 603
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 580
effective length of database: 17,143,297,704
effective search space: 9943112668320
effective search space used: 9943112668320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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