ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags20h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UGPI5_ARATH (Q9C7F7) Uncharacterized GPI-anchored protein At1g27... 110 4e-24
22SSL_PICGL (P26986) 2S seed storage-like protein precursor 47 4e-05
3NLTP_PINTA (Q41073) Nonspecific lipid-transfer protein precursor... 36 0.065
4NLTPB_RICCO (P10974) Nonspecific lipid-transfer protein B (NS-LT... 33 0.55
5PE2R1_CANFA (Q9BGL8) Prostaglandin E2 receptor, EP1 subtype (Pro... 32 1.2
6NLTP_MAIZE (P19656) Nonspecific lipid-transfer protein precursor... 31 2.7
7NLTPD_RICCO (Q43119) Nonspecific lipid-transfer protein D, cotyl... 31 2.7
8NLTPC_RICCO (P10975) Nonspecific lipid-transfer protein C, cotyl... 31 2.7
9NLTP_STRHE (O65888) Nonspecific lipid-transfer protein precursor... 31 2.7
10NLTP2_SORBI (Q43194) Nonspecific lipid-transfer protein 2 precur... 30 3.6
11NLTP4_ORYSA (Q42976) Nonspecific lipid-transfer protein 4 precur... 30 4.6
12NLT41_HORVU (Q43767) Nonspecific lipid-transfer protein 4.1 prec... 30 4.6
13PRIA_RHORU (P05445) Primosomal protein N' (EC 3.6.1.-) (ATP-depe... 30 6.1

>UGPI5_ARATH (Q9C7F7) Uncharacterized GPI-anchored protein At1g27950 precursor|
          Length = 193

 Score =  110 bits (274), Expect = 4e-24
 Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
 Frame = +3

Query: 201 ALQTKCQEDLQKLSDCMDYATGHEDTPSAKCCEDTADTQRARPECLCNIIQQVHSGSHGV 380
           AL  +C +D QK++ C+D+ATG    PS KCC+   D +   P+CLC +IQQ  +G   +
Sbjct: 30  ALADECNQDFQKVTLCLDFATGKATIPSKKCCDAVEDIKERDPKCLCFVIQQAKTGGQAL 89

Query: 381 QQLGLRFDRLLAQPAACKLANANVSLCINLLHLTPSSPDYALFANASKITP------STA 542
           + LG++ D+L+  P +C+L NA+++ C  LL ++PSSPD A+F N +  TP      S A
Sbjct: 90  KDLGVQEDKLIQLPTSCQLHNASITNCPKLLGISPSSPDAAVFTNNATTTPVAPAGKSPA 149

Query: 543 APARDT 560
            PA  T
Sbjct: 150 TPATST 155



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>2SSL_PICGL (P26986) 2S seed storage-like protein precursor|
          Length = 172

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 21/47 (44%), Positives = 27/47 (57%)
 Frame = +3

Query: 219 QEDLQKLSDCMDYATGHEDTPSAKCCEDTADTQRARPECLCNIIQQV 359
           Q D Q+LS C DY     + PS +CCE   + QR  P+C C  IQQ+
Sbjct: 55  QRDPQRLSSCRDYLERRREQPSERCCE---ELQRMSPQCRCQAIQQM 98



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>NLTP_PINTA (Q41073) Nonspecific lipid-transfer protein precursor (LTP)|
          Length = 123

 Score = 36.2 bits (82), Expect = 0.065
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
 Frame = +3

Query: 216 CQEDLQKLSDCMDYATGHEDTPSAKCCEDT--ADTQ-RARP--ECLCNIIQQVHSGSHGV 380
           C + +  ++ C  Y  G+  TP+A CC      D+Q +A P  + +CN ++         
Sbjct: 34  CNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKT------QA 87

Query: 381 QQLGLRFDRLLAQPAACKLANANVSLCINL 470
           +  G++  +    P  CK+ + NV +  N+
Sbjct: 88  KSYGVKLGKAANLPGLCKVTDLNVPISPNV 117



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>NLTPB_RICCO (P10974) Nonspecific lipid-transfer protein B (NS-LTP B)|
           (Phospholipid transfer protein) (PLTP)
          Length = 92

 Score = 33.1 bits (74), Expect = 0.55
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 216 CQEDLQKLSDCMDYATGHEDTPSAKCCEDTADTQRARP 329
           C +  + LS C+ + TG + TPS  CC    + +R  P
Sbjct: 3   CGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAP 40



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>PE2R1_CANFA (Q9BGL8) Prostaglandin E2 receptor, EP1 subtype (Prostanoid EP1|
           receptor) (PGE receptor, EP1 subtype)
          Length = 403

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 451 TLALASLQAAGWARRRSKRRPSCCTP 374
           TL+  +L  A W RRRS+RRP  C P
Sbjct: 226 TLSGLALLRARWRRRRSRRRPQACGP 251



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>NLTP_MAIZE (P19656) Nonspecific lipid-transfer protein precursor (LTP)|
           (Phospholipid transfer protein) (PLTP) (Allergen Zea m
           14)
          Length = 120

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
 Frame = +3

Query: 216 CQEDLQKLSDCMDYATGHEDTPSAKCCE-----DTADTQRARPECLCNIIQQVHSGSHGV 380
           C +    ++ C+ YA G    PSA CC      + A    A     CN ++   +G  G+
Sbjct: 31  CGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGL 90



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>NLTPD_RICCO (Q43119) Nonspecific lipid-transfer protein D, cotyledon-specific|
           isoform precursor (NS-LTP D)
          Length = 116

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +3

Query: 216 CQEDLQKLSDCMDYATGHEDTPSAKCC---EDTADTQRA--RPECLCNIIQQVHSGSHGV 380
           C     K + C+ +ATG +  PS+ CC   +  A T ++    + +C  ++         
Sbjct: 28  CSTVDMKAAACVGFATGKDSKPSSACCTGLQQLAQTVKSVDDKKAICRCLKA------SS 81

Query: 381 QQLGLRFDRLLAQPAACKL 437
           + LG++   L   PAAC +
Sbjct: 82  KSLGIKDQFLSKIPAACNI 100



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>NLTPC_RICCO (P10975) Nonspecific lipid-transfer protein C, cotyledon-specific|
           isoform precursor (NS-LTP C) (Phospholipid transfer
           protein) (PLTP)
          Length = 116

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
 Frame = +3

Query: 216 CQEDLQKLSDCMDYATGHEDTPSAKCCE---------DTADTQRARPECLCNIIQQVHSG 368
           C     K + C+ +ATG +  PS  CC           T D ++A   CL          
Sbjct: 28  CSTVDMKAAACVGFATGKDSKPSQACCTGLQQLAQTVKTVDDKKAICRCL---------- 77

Query: 369 SHGVQQLGLRFDRLLAQPAACKL 437
               + LG++   L   PAAC +
Sbjct: 78  KASSKSLGIKDQFLSKIPAACNI 100



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>NLTP_STRHE (O65888) Nonspecific lipid-transfer protein precursor (LTP)|
           (Fragment)
          Length = 118

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +3

Query: 234 KLSDCMDYATGHEDTPSAKCC---EDTADTQRARPE--CLCNIIQQVHSGSHGVQQLGLR 398
           K + C+ +ATG +  PSA CC      A T +   +   +C  ++        VQ     
Sbjct: 16  KAASCISFATGKDKKPSAACCSGLHPLAQTVKTVEDNKAICRCLKTAIKNFSRVQ----- 70

Query: 399 FDRLLAQ-PAACKL 437
            DR L Q P  CK+
Sbjct: 71  -DRFLGQIPTPCKI 83



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>NLTP2_SORBI (Q43194) Nonspecific lipid-transfer protein 2 precursor (LTP 2)|
          Length = 122

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
 Frame = +3

Query: 216 CQEDLQKLSDCMDYATGHEDTPSAKCCE-----DTADTQRARPECLCNIIQQVHSGSHGV 380
           C +    +  C+ YA G    PSA CC      ++A    A     CN ++    G  G+
Sbjct: 33  CGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGL 92



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>NLTP4_ORYSA (Q42976) Nonspecific lipid-transfer protein 4 precursor (LTP 4)|
          Length = 121

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 216 CQEDLQKLSDCMDYATGHEDTPSAKCC 296
           C +    ++ C+ Y  G E +PS+ CC
Sbjct: 32  CGDVTSSIAPCLSYVMGRESSPSSSCC 58



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>NLT41_HORVU (Q43767) Nonspecific lipid-transfer protein 4.1 precursor (LTP 4.1)|
           (CW21) (CW-21)
          Length = 115

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
 Frame = +3

Query: 216 CQEDLQKLSDCMDYATGHEDTPSAKCC----------EDTADTQRARPECLCNIIQQVHS 365
           C +    LS C+ YA G+   P A CC          + TAD Q A     C  I+    
Sbjct: 29  CGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAA-----CKCIKSAAG 83

Query: 366 GSHGVQQLGL 395
           G +  +  G+
Sbjct: 84  GLNAGKAAGI 93



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>PRIA_RHORU (P05445) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase|
           priA) (Replication factor Y)
          Length = 811

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 367 PLCTCWMILQRHSGRALCVSAVSSQHLADGVSSCPVA*SM 248
           P CT W++  R  GR  C      Q + +   +C VA S+
Sbjct: 530 PRCTAWLVEHRRDGRLRCHHCGYQQPIPETCPACGVADSL 569


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.125    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,169,941
Number of Sequences: 219361
Number of extensions: 702091
Number of successful extensions: 2848
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2846
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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