ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags20h01 |
|---|---|
| Clone Library Name | barley_pub |
>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein| (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C homolog) Length = 1288 Score = 33.5 bits (75), Expect = 0.34 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +3 Query: 117 AEEEIRRRSMQASLRAAMPQPPEN-TADGSVPRQVPRMTVDVNFSEFAGESDAG 275 A EE+ RS++ L + P PP T + PR + V+ NF +AGE G Sbjct: 49 ASEELDNRSLEEILNSIPPPPPPAMTNEAGAPRLMITHIVNQNFKSYAGEKILG 102
>YFF4_YEAST (P43549) Hypothetical 70.5 kDa protein in AGP3-DAK3 intergenic| region Length = 646 Score = 32.7 bits (73), Expect = 0.58 Identities = 21/62 (33%), Positives = 31/62 (50%) Frame = +3 Query: 171 PQPPENTADGSVPRQVPRMTVDVNFSEFAGESDAGSNQGTPGRPLHHVHSISPSTASFAR 350 PQ P NT +V R+ R + +VNFS ES A S R L ++ ++ ST + + Sbjct: 244 PQKPSNTHIENVSRKKKRTSHNVNFS-LGDESYASSIADAESRKLKNMQTLDGSTPVYTK 302 Query: 351 SP 356 P Sbjct: 303 LP 304
>SMC4_MOUSE (Q8CG47) Structural maintenance of chromosomes 4-like 1 protein| (Chromosome-associated polypeptide C) (XCAP-C homolog) Length = 1286 Score = 32.0 bits (71), Expect = 0.98 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +3 Query: 123 EEIRRRSMQASLRAAMPQPPENTA-DGSVPRQVPRMTVDVNFSEFAGESDAG 275 EE+ RS++ L + P PP A + PR + V+ NF +AGE G Sbjct: 49 EELDNRSLEEILNSIPPPPPPAMASEAGAPRLMITHIVNQNFKSYAGEKVLG 100
>ACM4_HUMAN (P08173) Muscarinic acetylcholine receptor M4| Length = 479 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Frame = +3 Query: 117 AEEEIRRRSMQASLRAAMPQPPENTADGSVPRQVPRMTVDVNFSEFAGESDAGS-NQGTP 293 A EE+R ++ + A+P PP AD + + ES +GS Q T Sbjct: 263 AREELRNGKLEEAPPPALPPPPRPVAD----------------KDTSNESSSGSATQNTK 306 Query: 294 GRPLHHVHSISPSTASFARSPFGSRNHNPGN 386 RP + + +T + P R NP + Sbjct: 307 ERPATELSTTEATTPAMPAPPLQPRALNPAS 337
>FBX42_MOUSE (Q6PDJ6) F-box only protein 42| Length = 717 Score = 31.2 bits (69), Expect = 1.7 Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 12/109 (11%) Frame = +3 Query: 189 TADGSVPRQVPRMTVDVNFSEFAGESDAGS-NQGTPGRPLHHVHSIS---PSTASFARSP 356 T GSV R P T V+ + AG+ + G R L + ++S PS ++ P Sbjct: 522 TVAGSV-RHPPEQTNGVHTPPHVASALAGAVSPGALRRSLEAIKAMSSKGPSASAALSPP 580 Query: 357 FGSRNHNPGNXXXXXXXXXXXXXXXXXXGTGHQ--------GHHPSASL 479 GS +PG+ G GH GHHP SL Sbjct: 581 LGSSPSSPGSQSLSSGETVPNSRPGPAQGDGHSLPPIARRLGHHPPQSL 629
>MUTA_STRCM (Q05064) Methylmalonyl-CoA mutase small subunit (EC 5.4.99.2)| (MCM-beta) Length = 616 Score = 30.8 bits (68), Expect = 2.2 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = +3 Query: 192 ADGSVPRQVPRMTVDVNFSEFAGESDAGSNQGTPGRPLHHVHSISPSTASFARSPFGS 365 A + P +PR+ D + E G SDA + T RP + ++ P+ A AR+ F + Sbjct: 463 APAAPPGGLPRVRRDEAYEELRGRSDA-HLEATGARPKVFIAALGPAAAHTARATFAA 519
>SLU7_EMENI (Q5B3U2) Pre-mRNA-splicing factor slu7 (Splicing factor sluA)| Length = 466 Score = 30.8 bits (68), Expect = 2.2 Identities = 21/68 (30%), Positives = 27/68 (39%) Frame = +3 Query: 102 KQILNAEEEIRRRSMQASLRAAMPQPPENTADGSVPRQVPRMTVDVNFSEFAGESDAGSN 281 +Q++ EE+ R QA L Q + D P Q R +A ESD G Sbjct: 130 RQVVEEYEELERLKRQAKLTKGETQTTNDGLDDEAPEQEAR---------YAEESDMGRQ 180 Query: 282 QGTPGRPL 305 Q T R L Sbjct: 181 QSTATRNL 188
>SMC4_MICAR (Q9ERA5) Structural maintenance of chromosomes 4-like 1 protein| (Chromosome-associated polypeptide C) (XCAP-C homolog) (Fragment) Length = 1243 Score = 30.0 bits (66), Expect = 3.7 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 123 EEIRRRSMQASLRAAMPQPPENTA-DGSVPRQVPRMTVDVNFSEFAGESDAG 275 EE+ RS++ L + P PP A + PR + V+ NF AGE G Sbjct: 6 EEVDNRSLEEILSSIPPPPPPAMASEAGAPRLMITHIVNQNFKSCAGEKILG 57
>PTH_WOLTR (Q5GTI9) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 182 Score = 29.6 bits (65), Expect = 4.9 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = -3 Query: 230 GHSGHLSGNTSISCVFWRLRHGSTQRSLHAASSDFFFGI*NLLQHLHEIMLFLIQGIQLV 51 GH+G S ++SI +WRLR G + + +D+ + L + ++ + Q I L+ Sbjct: 110 GHNGLKSIDSSIGNDYWRLRFGIGRSDSQRSLADYVLSKFSNLDDVIPLVERIAQNIHLM 169 Query: 50 SQ-LSLPFFNSI 18 Q ++ F NSI Sbjct: 170 LQGNNIAFTNSI 181
>RP1L1_MOUSE (Q8CGM2) Retinitis pigmentosa 1-like 1 protein (Retinitis pigmentosa| 1-like protein 1) Length = 1859 Score = 28.9 bits (63), Expect = 8.3 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -3 Query: 299 TSRSALVGTSI*LPSKLAEIDINGHSGHLSGNTSISCV 186 TS AL+GT P+ + +D++ SG SG +S+ CV Sbjct: 1144 TSHQALLGTEDFTPTSSSGVDVSSGSGG-SGESSVPCV 1180
>LMX1B_MOUSE (O88609) LIM homeobox transcription factor 1 beta (LIM/homeobox| protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2) Length = 372 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +3 Query: 177 PPENTADGSVPRQVPRMTVDVNFSE-FAGESDAGSNQGTPGRPLHHVHSISPS 332 PP+ + S+ + T + S+ F G SD GS Q G P+ ++S+ S Sbjct: 316 PPQMPGNDSIFHDIDSDTSLTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSS 368
>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082| Length = 721 Score = 28.9 bits (63), Expect = 8.3 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Frame = +3 Query: 219 PRMTVDVNFSEFAGESDAGSNQGT-PGRPLHHVHSISPSTASFARSPFGS 365 PR + + S AGS G P P H + P TA SPFG+ Sbjct: 187 PRPVTAEDMTSMTANSPAGSPFGAAPSAPSHSTTTSGPPTAPTPTSPFGT 236
>NPFF1_RAT (Q9EP86) Neuropeptide FF receptor 1 (G-protein coupled receptor| 147) (RFamide-related peptide receptor OT7T022) Length = 432 Score = 28.9 bits (63), Expect = 8.3 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Frame = +3 Query: 135 RRSMQASLRAAMPQPP---ENTADGSVPRQV--PRMTVDVNFSEFAGESDAGSNQGTPG 296 RR QA+ RA + PP A P ++ R+ VDV S+ S++G + G PG Sbjct: 339 RRGFQAAFRAQLCWPPWAAHKQAYSERPNRLLRRRVVVDVQPSDSGLPSESGPSSGVPG 397
>HLXB9_MOUSE (Q9QZW9) Homeobox protein HB9| Length = 404 Score = 28.9 bits (63), Expect = 8.3 Identities = 20/64 (31%), Positives = 23/64 (35%) Frame = +3 Query: 156 LRAAMPQPPENTADGSVPRQVPRMTVDVNFSEFAGESDAGSNQGTPGRPLHHVHSISPST 335 LRA P PP A P F G G G PG P HH H + + Sbjct: 74 LRAESPSPPRLLAAHCALLPKPG---------FLGAGGGGGAAGGPGTPHHHAHPGAAAA 124 Query: 336 ASFA 347 A+ A Sbjct: 125 AAAA 128
>AMYB_DROYA (Q9BN01) Alpha-amylase B precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 494 Score = 28.9 bits (63), Expect = 8.3 Identities = 20/53 (37%), Positives = 25/53 (47%) Frame = +3 Query: 222 RMTVDVNFSEFAGESDAGSNQGTPGRPLHHVHSISPSTASFARSPFGSRNHNP 380 R VDV F+ A + G GT G + SPST SF P+ S + NP Sbjct: 108 RTYVDVVFNHMAAD---GGTYGTGGS------TASPSTKSFPGVPYSSLDFNP 151
>AMYA_DROYA (P83833) Alpha-amylase A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 494 Score = 28.9 bits (63), Expect = 8.3 Identities = 20/53 (37%), Positives = 25/53 (47%) Frame = +3 Query: 222 RMTVDVNFSEFAGESDAGSNQGTPGRPLHHVHSISPSTASFARSPFGSRNHNP 380 R VDV F+ A + G GT G + SPST SF P+ S + NP Sbjct: 108 RTYVDVVFNHMAAD---GGTYGTGGS------TASPSTKSFPGVPYSSLDFNP 151
>TUBE_DROME (P22812) Protein Tube| Length = 462 Score = 28.9 bits (63), Expect = 8.3 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +3 Query: 114 NAEEEIRRRSMQASLRAAMPQPPENTADGSVPRQVPRMTVDVNFSEFAG 260 N E++I RR ++PQP NT + PR+ R T + NF+ G Sbjct: 210 NFEKDIVRRDK------SVPQPSGNTPPIAPPRRQQRSTTNSNFATLTG 252 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,755,258 Number of Sequences: 219361 Number of extensions: 1428005 Number of successful extensions: 4223 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4082 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4216 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
