ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags20g21 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 88.2 bits (217), Expect = 8e-18 Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 2/142 (1%) Frame = +2 Query: 11 LRSLILSGDFFLAAVVACTLTKLVLRLEEVQPSKVEANKACTGALLVITSILQLGLSSYL 190 LR +L GDFF+AA +A TLTK+ LR + K + N A+L++ +IL LG SS Sbjct: 542 LRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLP 601 Query: 191 PQPIDNDSYDRIVLCVKLLCNIGDDVRRIWLQSCRQSFAKMLAEK--QFRDTEEMRAKAQ 364 +PI +D DRI LC+K+L + I+ + CRQS ++ML+ K + + +++ ++ + Sbjct: 602 KKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSQMLSAKLEEEKLSQKKESEKR 661 Query: 365 ISHGQPDDLIDFYHLKSRKGMS 430 QPDD I F L ++ M+ Sbjct: 662 NVTVQPDDPISFMQLTAKNEMN 683
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 88.2 bits (217), Expect = 8e-18 Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 2/142 (1%) Frame = +2 Query: 11 LRSLILSGDFFLAAVVACTLTKLVLRLEEVQPSKVEANKACTGALLVITSILQLGLSSYL 190 LR +L GDFF+AA +A TLTK+ LR + K + N A+L++ +IL LG SS Sbjct: 542 LRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLP 601 Query: 191 PQPIDNDSYDRIVLCVKLLCNIGDDVRRIWLQSCRQSFAKMLAEK--QFRDTEEMRAKAQ 364 +PI +D DRI LC+K+L + I+ + CRQS ++ML+ K + + +++ ++ + Sbjct: 602 KKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSQMLSAKLEEEKLSQKKESEKR 661 Query: 365 ISHGQPDDLIDFYHLKSRKGMS 430 QPDD I F L ++ M+ Sbjct: 662 NVTVQPDDPISFMQLTAKNEMN 683
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 87.4 bits (215), Expect = 1e-17 Identities = 52/142 (36%), Positives = 82/142 (57%), Gaps = 2/142 (1%) Frame = +2 Query: 11 LRSLILSGDFFLAAVVACTLTKLVLRLEEVQPSKVEANKACTGALLVITSILQLGLSSYL 190 LR +L GDFF+AA +A TLTK+ LR + K + N A+L++ +IL LG SS Sbjct: 542 LRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLP 601 Query: 191 PQPIDNDSYDRIVLCVKLLCNIGDDVRRIWLQSCRQSFAKMLAEK--QFRDTEEMRAKAQ 364 +PI +D DRI LC+K+L + I+ + CRQS + ML+ K + + +++ ++ + Sbjct: 602 KKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEKR 661 Query: 365 ISHGQPDDLIDFYHLKSRKGMS 430 QPDD I F L ++ M+ Sbjct: 662 NVTVQPDDPISFMQLTAKNEMN 683
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 85.1 bits (209), Expect = 7e-17 Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = +2 Query: 11 LRSLILSGDFFLAAVVACTLTKLVLRLEEVQPSKVEANKACTGALLVITSILQLGLSSYL 190 LR ++ GDFF+ A ++ TLTKL LR E++ N+ T +L+++SIL LG S + Sbjct: 554 LRQYLMDGDFFIGAALSATLTKLALRYAELETEARAQNRLTTQVMLIMSSILHLGKSGFP 613 Query: 191 PQPIDNDSYDRIVLCVKLLCNIGDDVRRIWLQSCRQSFAKMLAEKQFRDTEEMRAKAQ-I 367 +PI ND DRI +C++ L + ++ CR++ KML + D ++ K + Sbjct: 614 SKPITNDDTDRIFVCLRTLSERTPEAISVFTLYCREALGKMLDAQHDEDQRMLKEKQKAT 673 Query: 368 SHGQPDDLIDFYHLKS 415 + QPDD + F L + Sbjct: 674 AKVQPDDPVLFAQLSN 689
>COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat protein)| (Beta-COP) (Fragment) Length = 400 Score = 82.0 bits (201), Expect = 6e-16 Identities = 40/143 (27%), Positives = 81/143 (56%) Frame = +2 Query: 20 LILSGDFFLAAVVACTLTKLVLRLEEVQPSKVEANKACTGALLVITSILQLGLSSYLPQP 199 LI GD++LA+ ++ +LTKL R E++ ++NK +++I+ ++ L +S + Sbjct: 2 LIADGDWYLASCISSSLTKLFFRAEQLNIDNADSNKLKAQVMMIISVLINLSKASQVST- 60 Query: 200 IDNDSYDRIVLCVKLLCNIGDDVRRIWLQSCRQSFAKMLAEKQFRDTEEMRAKAQISHGQ 379 +Y+R++ C+++L + +++IWLQ CR SFA L + +E + + + Sbjct: 61 -SKSAYERMLSCIQVLIDSNATIKKIWLQDCRDSFANYLKYLLIKQSENKKKTEKEVLVK 119 Query: 380 PDDLIDFYHLKSRKGMSQLELED 448 P+++I+ LKS+K ++ ED Sbjct: 120 PNNIINIRQLKSKKAFGPVDTED 142
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 77.0 bits (188), Expect = 2e-14 Identities = 40/113 (35%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Frame = +2 Query: 11 LRSLILSGDFFLAAVVACTLTKLVLRLEEVQPSKVEANKACTGALLVITSILQLGLSSYL 190 LR+ ILSGD++LAAV+A LTKLV+R + K N A L++TSI+++G S ++ Sbjct: 546 LRTQILSGDYYLAAVLASALTKLVMRFARLSFDKERLNALKAEACLIMTSIIRVGQSKFV 605 Query: 191 PQPIDNDSYDRIVLCVKLLCNIGD--DVRRIWLQSCRQSFAKMLAEKQFRDTE 343 ID+DS +RI+ C++ + + + + + ++L R++F+ ++A+ R E Sbjct: 606 KYTIDDDSVERIMNCIRAIYSFEELPEFQTVFLDDMRKAFSSLVAQSDKRQKE 658
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 67.4 bits (163), Expect = 2e-11 Identities = 43/119 (36%), Positives = 68/119 (57%) Frame = +2 Query: 11 LRSLILSGDFFLAAVVACTLTKLVLRLEEVQPSKVEANKACTGALLVITSILQLGLSSYL 190 +R +LSGDF+ AA++A T+ KLVL+ E V +K N ALL++ SI+++G SS + Sbjct: 552 IRRFVLSGDFYTAAILANTIIKLVLKFENVSKNKTVINALKAEALLILVSIVRVGQSSLV 611 Query: 191 PQPIDNDSYDRIVLCVKLLCNIGDDVRRIWLQSCRQSFAKMLAEKQFRDTEEMRAKAQI 367 + ID DS +R++ + +L D+V ++ K+L E F DT + K QI Sbjct: 612 EKKIDEDSLERVMTSISILL---DEVN----PEEKKEEVKLL-EVAFLDTTKSSFKRQI 662
>MCM7_HUMAN (P33993) DNA replication licensing factor MCM7 (CDC47 homolog)| (P1.1-MCM3) Length = 719 Score = 33.5 bits (75), Expect = 0.25 Identities = 23/95 (24%), Positives = 41/95 (43%) Frame = +2 Query: 65 TLTKLVLRLEEVQPSKVEANKACTGALLVITSILQLGLSSYLPQPIDNDSYDRIVLCVKL 244 T+ +V R+ EV+P V A C Q G +Y QPI + ++ +++C Sbjct: 162 TVRGIVTRVSEVKPKMVVATYTCD----------QCGAETY--QPIQSPTFMPLIMCPSQ 209 Query: 245 LCNIGDDVRRIWLQSCRQSFAKMLAEKQFRDTEEM 349 C R++LQ+ F K K ++++ Sbjct: 210 ECQTNRSGGRLYLQTRGSRFIKFQEMKMQEHSDQV 244
>MCM7_MOUSE (Q61881) DNA replication licensing factor MCM7 (CDC47 homolog)| Length = 719 Score = 33.1 bits (74), Expect = 0.32 Identities = 22/82 (26%), Positives = 36/82 (43%) Frame = +2 Query: 65 TLTKLVLRLEEVQPSKVEANKACTGALLVITSILQLGLSSYLPQPIDNDSYDRIVLCVKL 244 T+ +V R+ EV+P V A C Q G +Y QPI + ++ +++C Sbjct: 162 TVRGIVTRVSEVKPRMVVATYTCD----------QCGAETY--QPIQSPTFMPLIMCPSQ 209 Query: 245 LCNIGDDVRRIWLQSCRQSFAK 310 C R++LQ+ F K Sbjct: 210 ECQTNRSGGRLYLQTRGSKFVK 231
>SAHH_PLAF7 (P50250) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (PfSAHH) Length = 479 Score = 33.1 bits (74), Expect = 0.32 Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 16/164 (9%) Frame = +2 Query: 5 LNLRSLILSGDFFLAAVVACTLTKLVLRLEEVQPSKVEANKACTGALLVITSILQLG-LS 181 + L ++ GDFF + CT V++LE + K N A G + +Q+ L Sbjct: 304 VTLDEIVDKGDFF----ITCTGNVDVIKLEHLLKMK---NNAVVGNIGHFDDEIQVNELF 356 Query: 182 SYLPQPIDN--DSYDRIVL-------------CVKLLCNIGDDVRRIWLQSCRQSFAKML 316 +Y I+N DRI L + L C G + C Q+FA+ L Sbjct: 357 NYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQ-L 415 Query: 317 AEKQFRDTEEMRAKAQISHGQPDDLIDFYHLKSRKGMSQLELED 448 Q +DT + K + D+ + YHLK + S EL+D Sbjct: 416 DLWQNKDTNKYENKVYLLPKHLDEKVALYHLK-KLNASLTELDD 458
>SAHH_PLACH (Q4XZZ5) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 479 Score = 31.6 bits (70), Expect = 0.93 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 16/164 (9%) Frame = +2 Query: 5 LNLRSLILSGDFFLAAVVACTLTKLVLRLEEVQPSKVEANKACTGALLVITSILQLG-LS 181 + L ++ GDFF V CT +++LE + K N A G + +Q+ L Sbjct: 303 VTLEEIVEKGDFF----VTCTGNVDIIKLEHLLKMK---NNAVVGNIGHFDDEIQIADLF 355 Query: 182 SYLPQPIDN--DSYDRIVL-------------CVKLLCNIGDDVRRIWLQSCRQSFAKML 316 S+ I+N DR+ L + L C G + C Q FA++ Sbjct: 356 SHEGIEIENVKPQVDRVTLPNGNKIIVLAQGRLLNLACATGHPAFVMSFSFCNQVFAQLE 415 Query: 317 AEKQFRDTEEMRAKAQISHGQPDDLIDFYHLKSRKGMSQLELED 448 + + + K+ I + D+ + +YHLK + + EL+D Sbjct: 416 LWENRNTGKYEKNKSYILPKELDEKVAYYHLK-KLNATLTELDD 458
>CF170_HUMAN (Q96NH3) Protein C6orf170| Length = 1247 Score = 31.6 bits (70), Expect = 0.93 Identities = 14/41 (34%), Positives = 26/41 (63%) Frame = +2 Query: 203 DNDSYDRIVLCVKLLCNIGDDVRRIWLQSCRQSFAKMLAEK 325 DND D+++LC+K+ D + W+++C++ F KM+ K Sbjct: 915 DND-LDKLLLCLKI-----SDKQTEWIENCQRQFCKMMKAK 949
>HXB7_HUMAN (P09629) Homeobox protein Hox-B7 (Hox-2C) (HHO.C1)| Length = 217 Score = 31.2 bits (69), Expect = 1.2 Identities = 19/43 (44%), Positives = 23/43 (53%) Frame = +1 Query: 46 SCSCCMYPYQTGIKAGGGATIEG*SKQGLYWGLAGHYVHSSAG 174 SC+ P + G AG GA+ G S QGLY G G S+AG Sbjct: 31 SCAFASNPQRPGYGAGSGASFAG-SMQGLYPGGGGMAGQSAAG 72
>MCM7_XENLA (Q91876) DNA replication licensing factor MCM7 (CDC47 homolog)| (x.MCM7) Length = 720 Score = 31.2 bits (69), Expect = 1.2 Identities = 21/78 (26%), Positives = 34/78 (43%) Frame = +2 Query: 77 LVLRLEEVQPSKVEANKACTGALLVITSILQLGLSSYLPQPIDNDSYDRIVLCVKLLCNI 256 +V R+ EV+P V A C Q G +Y QPI + ++ +++C C Sbjct: 165 IVTRVTEVKPMMVVATYTCD----------QCGAETY--QPIQSPTFMPLIMCPSRECQT 212 Query: 257 GDDVRRIWLQSCRQSFAK 310 R++LQ+ F K Sbjct: 213 NRSGGRLYLQTRGSKFIK 230
>SAHH_PLAYO (Q7RKK8) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 479 Score = 30.4 bits (67), Expect = 2.1 Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 16/164 (9%) Frame = +2 Query: 5 LNLRSLILSGDFFLAAVVACTLTKLVLRLEEVQPSKVEANKACTGALLVITSILQLG-LS 181 + L ++ GDFF + CT +++LE + K N A G + +Q+ L Sbjct: 303 VTLEEIVEKGDFF----ITCTGNVDIIKLEHLLKMK---NNAVVGNIGHFDDEIQVSDLF 355 Query: 182 SYLPQPIDN--DSYDRIVL-------------CVKLLCNIGDDVRRIWLQSCRQSFAKML 316 ++ I+N DR+ L + L C G + C Q FA++ Sbjct: 356 NHEGIEIENVKPQVDRVTLPNGNKIIVLAQGRLLNLSCATGHPAFVMSFSFCNQIFAQLE 415 Query: 317 AEKQFRDTEEMRAKAQISHGQPDDLIDFYHLKSRKGMSQLELED 448 + + + K+ I + D+ + FYHLK + + EL+D Sbjct: 416 LWENRNTGKYEKNKSYILPKELDEKVAFYHLK-KLNATLTELDD 458
>Y1836_MYCTU (Q50597) Hypothetical protein Rv1836c/MT1884| Length = 677 Score = 30.4 bits (67), Expect = 2.1 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -3 Query: 209 HYQLVGEGRRIAPAEEWT**PARPQYKPCLLQPSMVAPPP 90 HY VG G + +E++ P RP ++P +P APPP Sbjct: 52 HYSAVG-GYSASGSEDYPDIPPRPDWEPTGAEPIAAAPPP 90
>DNAE2_BRAJA (Q89QU8) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1151 Score = 29.3 bits (64), Expect = 4.6 Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Frame = +2 Query: 65 TLTKLVLRLEEVQPSKV-EANKACTGALLVITSILQLGLSSYLPQPIDNDSYDRIVLCVK 241 TL +V +E+ KV K GA +V G L P D +Y R LC Sbjct: 46 TLAGVVRAYKELDNDKVLHKPKLLIGARIVFID----GTPDILVYPRDRAAYGR--LCQL 99 Query: 242 LLCNI-GDDVRRIWLQSCRQSFAKMLA 319 L GDDV RI CR +F+ +LA Sbjct: 100 LTRGKRGDDVTRIEKGECRLTFSDLLA 126
>YWBO_BACSU (P39598) Hypothetical protein ywbO| Length = 200 Score = 29.3 bits (64), Expect = 4.6 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 9/59 (15%) Frame = -3 Query: 425 CPFCFSGGRSQ*DHLAGHERSVPW--------PSSLLYP-*IASQQASWQNSVYMIATK 276 CPFCF G + + + G + V W PS L P S+Q WQ S+ +A K Sbjct: 13 CPFCFVGKAAFEEAIKGKDVEVEWMPFELRPSPSPQLDPVNDPSKQYMWQTSIQPMAEK 71
>FUK_HUMAN (Q8N0W3) L-fucose kinase (EC 2.7.1.52) (Fucokinase)| Length = 1084 Score = 29.3 bits (64), Expect = 4.6 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -1 Query: 436 KLTHALSAFQVVEVNKIIWLAMRDLCLGPHLFCIPEL 326 K H L A Q + + +IW A+R+ C GP L + ++ Sbjct: 557 KARHVLEARQDLSLRPLIWAAVREGCPGPLLATLDQV 593
>HTPX_METTH (O26669) Probable protease htpX homolog (EC 3.4.24.-)| Length = 258 Score = 28.9 bits (63), Expect = 6.0 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +2 Query: 56 VACTLTKLVLRLEEVQPSKVEANKACTGAL 145 +A L KLVLRL VQ + E + C G L Sbjct: 227 LASALYKLVLRLSPVQQGRPETGRGCQGLL 256
>TRI56_MOUSE (Q80VI1) Tripartite motif protein 56| Length = 734 Score = 28.9 bits (63), Expect = 6.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +3 Query: 156 RPFFSWGYPPTFPNQLIMIHMTGLC 230 RP FSW +P P +TGLC Sbjct: 469 RPVFSWSFPTRMPGDKRSPRITGLC 493
>PSTB3_SYNY3 (P73788) Phosphate import ATP-binding protein pstB 3 (EC 3.6.3.27)| (Phosphate-transporting ATPase 3) (ABC phosphate transporter 3) Length = 271 Score = 28.9 bits (63), Expect = 6.0 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +2 Query: 167 QLGLSSYLPQPIDNDSYDRIVLCVKLLCNI 256 ++G+ P P YD IV VKL CN+ Sbjct: 101 EIGMVFQRPNPFPTSIYDNIVYGVKLCCNV 130
>MRAZ_BACTN (Q8A250) Protein mraZ| Length = 156 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +2 Query: 209 DSYDRIVLCVKLL--CNIGDDVRRIWLQSCRQSFAKMLAEKQFRDTEEMRA 355 DS RI++ + L CNI D+R I + + + +AK AE+ F EE A Sbjct: 90 DSNGRILIPKRYLQICNIRGDIRFIGIDNKIEIWAKERAEQPFMSPEEFGA 140
>URB1_USTMA (P40349) Siderophore biosynthesis regulatory protein URBS1| Length = 950 Score = 28.5 bits (62), Expect = 7.9 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -3 Query: 284 ATKSSSHHHQYCKATSHKAQSCHMNHYQLVGEGRRIAPAE 165 A+ + SHHHQ A S + S +H R IAPA+ Sbjct: 13 ASPTPSHHHQQAAAASSSSSSSSSHHPPPRIAARPIAPAD 52
>SYL_CHLMU (Q9PKI4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 819 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/72 (22%), Positives = 35/72 (48%) Frame = +2 Query: 107 SKVEANKACTGALLVITSILQLGLSSYLPQPIDNDSYDRIVLCVKLLCNIGDDVRRIWLQ 286 +K+ +N+ G + ++ SS + D D ++ + L KL+ + DD+ ++ L Sbjct: 636 NKLWSNQGVAGCRRFLNRFYEMATSSRVK---DEDIFEGMSLAHKLVQRVTDDIEKLSLN 692 Query: 287 SCRQSFAKMLAE 322 + SF + + E Sbjct: 693 TITSSFMEFINE 704 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,683,304 Number of Sequences: 219361 Number of extensions: 1476095 Number of successful extensions: 4011 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3783 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4010 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
