ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags20g17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7 31 1.7
2ZIMP7_MOUSE (Q8CIE2) PIAS-like protein Zimp7 30 3.7
3Y2298_ARCFU (O27986) Hypothetical DNA primase small subunit-like... 30 3.7
4ANKH_TETNG (P58369) Progressive ankylosis protein homolog (ANK) 28 8.2
5TCMO_GLYEC (Q96423) Trans-cinnamate 4-monooxygenase (EC 1.14.13.... 28 8.2

>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7|
          Length = 920

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 207 FTSIMDSAASLKAAEMYTCTLGRAICSVADRRNQSGQKHDYLGAGQSTGRDK*THQGP 380
           FT    +AA   AA   T T    + ++ ++++Q   ++  +GAGQS       H GP
Sbjct: 144 FTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGP 201



to top

>ZIMP7_MOUSE (Q8CIE2) PIAS-like protein Zimp7|
          Length = 920

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 207 FTSIMDSAASLKAAEMYTCTLGRAICSVADRRNQSGQKHDYLGAGQSTGRDK*THQGP 380
           FT    +AA   AA   T T    + ++ ++++Q   ++  +G GQS       H GP
Sbjct: 144 FTQAAAAAAMAAAAATATATATATVAALQEKQSQELSQYGAMGTGQSFNSQFLQHGGP 201



to top

>Y2298_ARCFU (O27986) Hypothetical DNA primase small subunit-like protein AF2298|
          Length = 280

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 336 LRDSHAFGRFDFSCQRLSKWLG 271
           LR+  +F R++FS  R+ KWLG
Sbjct: 14  LRERESFYRYEFSLDRVEKWLG 35



to top

>ANKH_TETNG (P58369) Progressive ankylosis protein homolog (ANK)|
          Length = 487

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/35 (37%), Positives = 26/35 (74%)
 Frame = -1

Query: 325 SCFWPL*FLLSATEQMARPKVHVYISAALREAAES 221
           S +WPL  +L AT++++RP V++++S  L+  +E+
Sbjct: 239 SFWWPLALIL-ATQRISRPIVNLFVSRDLKGTSEA 272



to top

>TCMO_GLYEC (Q96423) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic|
           acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome
           P450 73)
          Length = 505

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 304 IKAAKSMTISEQASLLGETSKLTKGQVAPADGLLDLQREGESKENNI 444
           +K  K   + E+  L    S   +G     D +LD Q++GE  E+N+
Sbjct: 250 LKLFKDYFVDERMKLESTKSTSNEGLKCAIDHILDAQKKGEINEDNV 296


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.128    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,616,269
Number of Sequences: 219361
Number of extensions: 1066711
Number of successful extensions: 2395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2395
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
to top