>PO121_RAT (P52591) Nuclear envelope pore membrane protein POM 121 (Pore|
           membrane protein of 121 kDa) (P145)
          Length = 1199

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = -2

Query: 573 ETMVSTSPSLTLMDPGLG*QLDMPTM*FASFPASFPVP*VGS--DSHRRRPSWPCREAPT 400
           +T  +TSP  TL          +PT+  A+ PAS P P      +S ++    P   +  
Sbjct: 539 DTSPATSPPFTLT---------LPTVGPAASPASLPAPSSNPLLESLKKMQESPAPSSSE 589

Query: 399 PPECWCATLYTISPPRGKTALVVLV 325
           PPE   AT+   SPP+  + L  LV
Sbjct: 590 PPE--AATVAAPSPPKTPSLLAPLV 612

>TROAP_HUMAN (Q12815) Trophinin-associated protein (Tastin) (Trophinin-assisting|
           protein)
          Length = 778

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 26/119 (21%), Positives = 43/119 (36%)
 Frame = +3

Query: 93  IRPSVSSRKGSMARCGRCSCSTP*LGSTGLTRWCLSRSTYLTLRIPPCWMEFMNALARLS 272
           ++PS   + G    C R           G +  C      L   +PPC  ++  A   L 
Sbjct: 622 LQPSTQGQSGPPGPCPRVEL--------GASEPCTLEHRSLESSLPPCCSQWAPATTSLI 673

Query: 273 IKSRNAARKTEPTTSASILRPLERSCRVEEISCTVLRTSTLEESVLLCMARMDAFYVNR 449
             S++    + P  S   LRP      +  ++    RT  L E +  C+  +  F+  R
Sbjct: 674 FSSQHPLCASPPICSLQSLRPPAGQAGLSNLA---PRTLALRERLKSCLTAIHCFHEAR 729

>SLAP_BACLI (P49052) S-layer protein precursor (Surface layer protein)|
          Length = 874

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
 Frame = +2

Query: 242 GIHERSCKVEYQVEECSTENRANNECIHTKTTRAVLPRGGDIVYSVAHQHSG-GVGASLH 418
           GI E   KVE QV +      +N   I  K   A      D+V++V    +G      L 
Sbjct: 365 GIAEGKYKVEVQVTKRGGITVSNTGIIEVKNLDAEATAIKDVVFAVDTDKAGVNYAKPLS 424

Query: 419 GQDGRLLCESLPTYGTGKEAG--------NEANYIVGMSSCYPK---PGSIKVSDGEV 559
           G D  L  ++L     G++AG        N+ N +V  S+   K   PG I V +GE+
Sbjct: 425 GTDFTLNSKTLV---AGEKAGIHKVVAQINKENKVVDPSAISLKSSNPGVISVKNGEI 479

>COBQ_BRUSU (Q8G005) Cobyric acid synthase|
          Length = 483

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -1

Query: 640 ARPRGM*TRPMTPGVLAGAAVVGDDGQHLAVADLDGSWLRVATRHADDVVRLVPCLL 470
           AR RG+  RP  P  ++  A V DDG  +  A     WL+         V + P LL
Sbjct: 27  ARNRGLKVRPFKPQNMSNNAAVSDDGGEIGRA----QWLQALACGVPSSVHMNPVLL 79

>COBQ_BRUME (Q8YHV6) Cobyric acid synthase|
          Length = 483

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -1

Query: 640 ARPRGM*TRPMTPGVLAGAAVVGDDGQHLAVADLDGSWLRVATRHADDVVRLVPCLL 470
           AR RG+  RP  P  ++  A V DDG  +  A     WL+         V + P LL
Sbjct: 27  ARNRGLKVRPFKPQNMSNNAAVSDDGGEIGRA----QWLQALACGVPSSVHMNPVLL 79

>TRYA3_LUCCU (P35043) Trypsin alpha-3 (EC 3.4.21.4) (Fragment)|
          Length = 165

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 428 GRLLCESLPTYGTGKE--AGNEANYIVGMSSCYPKPGSIKVSDGEVLTIVS 574
           GR  C S  TYG G E  A     Y VG  SC    G   VS G ++ +VS
Sbjct: 85  GRTQCAS-STYGYGSEIKASMICAYTVGKDSCQGDSGGPLVSGGRLVGVVS 134

>YGFF_ECOLI (P52037) Hypothetical oxidoreductase ygfF (EC 1.-.-.-)|
          Length = 247

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 8   KCDSYNVTIDEYGRTVSKNYTGGLLCCYDQT-QCQLKEGFNG 130
           +C   N+T +   R +S N TG  LCC +   +  LK G +G
Sbjct: 93  QCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSG 134

>KPB2_MOUSE (Q8BWJ3) Phosphorylase b kinase alpha regulatory chain, liver isoform|
            (Phosphorylase kinase alpha L subunit)
          Length = 1235

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -1

Query: 616  RPMTPGVLAGAAVVGDDGQHLAVADLDGSWLRVATRHADDVVRLVP 479
            R  TP    G +     GQHL   +  G WLR   R  D  +  VP
Sbjct: 1038 RSSTPSSPTGTSSTDSGGQHLGWGEQQGQWLR--RRRLDGAINRVP 1081

>VDMB_BPT7 (P03694) DNA maturase B (DNA packaging protein B) (GP19)|
          Length = 586

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +3

Query: 27  SQSMSMGAQSRRTTLVGCFAAMIRPSVSSR 116
           S S +MGA+ +  TLV  FAA+++P  SSR
Sbjct: 166 SNSATMGAREKLWTLVQEFAALLKPLPSSR 195

>YFG8_YEAST (P43536) Hypothetical 18.6 kDa protein in COS4 5'region|
          Length = 160

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 306 PTTSASILRPLERSCRVEEISCTVLRTSTLEESVLLCMARMD--AFYVNRFQL 458
           P+  A  L PL  SCR++  +C    ++    S++    R+D   FY  +FQ+
Sbjct: 80  PSRHAENLAPLLASCRIQYTNCFSSSSNGQVPSIISLYLRVDLSPFYAKKFQI 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,512,868
Number of Sequences: 219361
Number of extensions: 2104556
Number of successful extensions: 6727
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6723
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)