ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags20g16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483551.1| Oryza sativa (japonica cultivar-group), mRNA 135 2e-28
2dbj|AK067831.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 133 8e-28
4dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic D... 133 8e-28
5dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic D... 133 8e-28
6gb|AY107588.1| Zea mays PCO070301 mRNA sequence 46 0.14
7gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.57
8gb|BT016757.1| Zea mays clone Contig590 mRNA sequence 42 2.2
9gb|BT016469.1| Zea mays clone Contig302 mRNA sequence 42 2.2
10emb|CT009536.7| Mouse DNA sequence from clone RP23-25A7 on chrom... 42 2.2
11emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete ch... 42 2.2
12gb|AY197773.1| Zea mays fructokinase 2 (frk2) mRNA, complete cds 42 2.2
13gb|AF457962.1| Zea mays clone csi1n.pk0029.c8, mRNA sequence 42 2.2
14gb|AC154669.2| Mus musculus BAC clone RP24-289P23 from 14, compl... 42 2.2
15gb|AY112523.1| Zea mays CL966_1 mRNA sequence 42 2.2
16gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 2.2
17gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 8.9
18emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete ... 40 8.9
19gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.9
20dbj|AP008931.1| Rhodococcus erythropolis PR4 plasmid pREL1, comp... 40 8.9
21gb|AC107623.2| Homo sapiens chromosome 3 clone RP11-648C16, comp... 40 8.9
22gb|AC096970.2| Homo sapiens chromosome 3 clone RP11-321A23, comp... 40 8.9
23gb|AC063933.13| Homo sapiens 3 BAC RP11-566A3 (Roswell Park Canc... 40 8.9
24gb|AC122918.4| Mus musculus chromosome 6 clone RP23-29F15, compl... 40 8.9
25emb|AL844144.10| Mouse DNA sequence from clone RP23-204D17 on ch... 40 8.9
26gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromoso... 40 8.9
27emb|AL627204.7| Mouse DNA sequence from clone RP23-118E21 on chr... 40 8.9 
>ref|XM_483551.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1691

 Score =  135 bits (68), Expect = 2e-28
 Identities = 222/272 (81%), Gaps = 1/272 (0%)
 Strand = Plus / Plus

                                                                        
Query: 354  gtggaggagatatcgtgtacagtgttgcgcaccagcactctggaggagtcggtgcttctc 413
            ||||||| ||||||||||   |||| ||||| ||||| || || ||| | ||||| ||| 
Sbjct: 953  gtggaggcgatatcgtgtttggtgtcgcgcatcagcattcaggtggaattggtgcctctt 1012

                                                                        
Query: 414  tgcatggccaggatggacgccttctatgtgaatcgcttccaacttacggcacagggaagg 473
            | || |||||||||||||| || || |||| |||| |||| |  || ||||  ||| | |
Sbjct: 1013 tacacggccaggatggacgtctgctttgtgcatcgattccgagctatggcaagggggaag 1072

                                                                        
Query: 474  aggcagggaacgaggcgaactacatcgtcggcatgtcgagttgctaccctaagccaggat 533
            |||| || || || |  |||||||||||||||||||| |  |||||||| ||||| ||||
Sbjct: 1073 aggctggcaatgaagataactacatcgtcggcatgtcaacatgctacccgaagccgggat 1132

                                                                        
Query: 534  ccatcaaggtcagcgacggcgaggtgctgaccatcgtctccaactacagcagcacccgcg 593
            |  |||||||||| || ||||||||||||||| |||||||||||||||||||   |||| 
Sbjct: 1133 cagtcaaggtcagtgatggcgaggtgctgaccgtcgtctccaactacagcagtgaccgcc 1192

                                            
Query: 594  agcacacccggcgtcatgggcctggtctacat 625
            |||||| ||||||||||||||||| |||||||
Sbjct: 1193 agcaca-ccggcgtcatgggcctgctctacat 1223



 Score =  113 bits (57), Expect = 7e-22
 Identities = 180/221 (81%)
 Strand = Plus / Plus

                                                                       
Query: 2   gagtgcaagtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaag 61
           ||||||||||| ||   ||||||| | || ||||| ||||||||||||| | || | |||
Sbjct: 601 gagtgcaagtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaag 660

                                                                       
Query: 62  aactacactggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaaggg 121
            |||||| |||||| ||   ||||||||||||| |||| |||||  || | |||||||| 
Sbjct: 661 gactacattggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggt 720

                                                                       
Query: 122 ttcaatggcgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggact 181
           ||||| || ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| |
Sbjct: 721 ttcaacggtgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagt 780

                                                    
Query: 182 gacgcggtggtgcctgtcaagatctacatatttgacgttac 222
           || ||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 781 gatgcggttgtgccagtcaagatttacatatttgatgttac 821



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 260 tgcaaggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgc 319
           |||||||||||||| ||||| |||||||||||  | |||||||| ||||| || ||||||
Sbjct: 859 tgcaaggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgc 918

             
Query: 320 at 321
           ||
Sbjct: 919 at 920
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>dbj|AK067831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121M08, full
            insert sequence
          Length = 1719

 Score =  135 bits (68), Expect = 2e-28
 Identities = 222/272 (81%), Gaps = 1/272 (0%)
 Strand = Plus / Plus

                                                                        
Query: 354  gtggaggagatatcgtgtacagtgttgcgcaccagcactctggaggagtcggtgcttctc 413
            ||||||| ||||||||||   |||| ||||| ||||| || || ||| | ||||| ||| 
Sbjct: 953  gtggaggcgatatcgtgtttggtgtcgcgcatcagcattcaggtggaattggtgcctctt 1012

                                                                        
Query: 414  tgcatggccaggatggacgccttctatgtgaatcgcttccaacttacggcacagggaagg 473
            | || |||||||||||||| || || |||| |||| |||| |  || ||||  ||| | |
Sbjct: 1013 tacacggccaggatggacgtctgctttgtgcatcgattccgagctatggcaagggggaag 1072

                                                                        
Query: 474  aggcagggaacgaggcgaactacatcgtcggcatgtcgagttgctaccctaagccaggat 533
            |||| || || || |  |||||||||||||||||||| |  |||||||| ||||| ||||
Sbjct: 1073 aggctggcaatgaagataactacatcgtcggcatgtcaacatgctacccgaagccgggat 1132

                                                                        
Query: 534  ccatcaaggtcagcgacggcgaggtgctgaccatcgtctccaactacagcagcacccgcg 593
            |  |||||||||| || ||||||||||||||| |||||||||||||||||||   |||| 
Sbjct: 1133 cagtcaaggtcagtgatggcgaggtgctgaccgtcgtctccaactacagcagtgaccgcc 1192

                                            
Query: 594  agcacacccggcgtcatgggcctggtctacat 625
            |||||| ||||||||||||||||| |||||||
Sbjct: 1193 agcaca-ccggcgtcatgggcctgctctacat 1223



 Score =  113 bits (57), Expect = 7e-22
 Identities = 180/221 (81%)
 Strand = Plus / Plus

                                                                       
Query: 2   gagtgcaagtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaag 61
           ||||||||||| ||   ||||||| | || ||||| ||||||||||||| | || | |||
Sbjct: 601 gagtgcaagtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaag 660

                                                                       
Query: 62  aactacactggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaaggg 121
            |||||| |||||| ||   ||||||||||||| |||| |||||  || | |||||||| 
Sbjct: 661 gactacattggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggt 720

                                                                       
Query: 122 ttcaatggcgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggact 181
           ||||| || ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| |
Sbjct: 721 ttcaacggtgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagt 780

                                                    
Query: 182 gacgcggtggtgcctgtcaagatctacatatttgacgttac 222
           || ||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 781 gatgcggttgtgccagtcaagatttacatatttgatgttac 821



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 260 tgcaaggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgc 319
           |||||||||||||| ||||| |||||||||||  | |||||||| ||||| || ||||||
Sbjct: 859 tgcaaggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgc 918

             
Query: 320 at 321
           ||
Sbjct: 919 at 920
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  133 bits (67), Expect = 8e-28
 Identities = 119/135 (88%), Gaps = 1/135 (0%)
 Strand = Plus / Plus

                                                                            
Query: 491      aactacatcgtcggcatgtcgagttgctaccctaagccaggatccatcaaggtcagcgac 550
                |||||||||||||||||||| |  |||||||| ||||| |||||  |||||||||| || 
Sbjct: 26913587 aactacatcgtcggcatgtcaacatgctacccgaagccgggatcagtcaaggtcagtgat 26913646

                                                                            
Query: 551      ggcgaggtgctgaccatcgtctccaactacagcagcacccgcgagcacacccggcgtcat 610
                ||||||||||||||| |||||||||||||||||||   |||| |||||| ||||||||||
Sbjct: 26913647 ggcgaggtgctgaccgtcgtctccaactacagcagtgaccgccagcaca-ccggcgtcat 26913705

                               
Query: 611      gggcctggtctacat 625
                ||||||| |||||||
Sbjct: 26913706 gggcctgctctacat 26913720



 Score =  113 bits (57), Expect = 7e-22
 Identities = 180/221 (81%)
 Strand = Plus / Plus

                                                                            
Query: 2        gagtgcaagtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaag 61
                ||||||||||| ||   ||||||| | || ||||| ||||||||||||| | || | |||
Sbjct: 26912812 gagtgcaagtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaag 26912871

                                                                            
Query: 62       aactacactggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaaggg 121
                 |||||| |||||| ||   ||||||||||||| |||| |||||  || | |||||||| 
Sbjct: 26912872 gactacattggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggt 26912931

                                                                            
Query: 122      ttcaatggcgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggact 181
                ||||| || ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| |
Sbjct: 26912932 ttcaacggtgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagt 26912991

                                                         
Query: 182      gacgcggtggtgcctgtcaagatctacatatttgacgttac 222
                || ||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 26912992 gatgcggttgtgccagtcaagatttacatatttgatgttac 26913032



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                          
Query: 264      aggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgcat 321
                |||||||||| ||||| |||||||||||  | |||||||| ||||| || ||||||||
Sbjct: 26913206 aggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgcat 26913263
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>dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0666G10
          Length = 150761

 Score =  133 bits (67), Expect = 8e-28
 Identities = 119/135 (88%), Gaps = 1/135 (0%)
 Strand = Plus / Plus

                                                                         
Query: 491   aactacatcgtcggcatgtcgagttgctaccctaagccaggatccatcaaggtcagcgac 550
             |||||||||||||||||||| |  |||||||| ||||| |||||  |||||||||| || 
Sbjct: 14987 aactacatcgtcggcatgtcaacatgctacccgaagccgggatcagtcaaggtcagtgat 15046

                                                                         
Query: 551   ggcgaggtgctgaccatcgtctccaactacagcagcacccgcgagcacacccggcgtcat 610
             ||||||||||||||| |||||||||||||||||||   |||| |||||| ||||||||||
Sbjct: 15047 ggcgaggtgctgaccgtcgtctccaactacagcagtgaccgccagcaca-ccggcgtcat 15105

                            
Query: 611   gggcctggtctacat 625
             ||||||| |||||||
Sbjct: 15106 gggcctgctctacat 15120



 Score =  113 bits (57), Expect = 7e-22
 Identities = 180/221 (81%)
 Strand = Plus / Plus

                                                                         
Query: 2     gagtgcaagtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaag 61
             ||||||||||| ||   ||||||| | || ||||| ||||||||||||| | || | |||
Sbjct: 14212 gagtgcaagtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaag 14271

                                                                         
Query: 62    aactacactggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaaggg 121
              |||||| |||||| ||   ||||||||||||| |||| |||||  || | |||||||| 
Sbjct: 14272 gactacattggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggt 14331

                                                                         
Query: 122   ttcaatggcgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggact 181
             ||||| || ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| |
Sbjct: 14332 ttcaacggtgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagt 14391

                                                      
Query: 182   gacgcggtggtgcctgtcaagatctacatatttgacgttac 222
             || ||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 14392 gatgcggttgtgccagtcaagatttacatatttgatgttac 14432



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 264   aggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgcat 321
             |||||||||| ||||| |||||||||||  | |||||||| ||||| || ||||||||
Sbjct: 14606 aggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgcat 14663
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>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0665C04
          Length = 177054

 Score =  133 bits (67), Expect = 8e-28
 Identities = 119/135 (88%), Gaps = 1/135 (0%)
 Strand = Plus / Plus

                                                                          
Query: 491    aactacatcgtcggcatgtcgagttgctaccctaagccaggatccatcaaggtcagcgac 550
              |||||||||||||||||||| |  |||||||| ||||| |||||  |||||||||| || 
Sbjct: 176377 aactacatcgtcggcatgtcaacatgctacccgaagccgggatcagtcaaggtcagtgat 176436

                                                                          
Query: 551    ggcgaggtgctgaccatcgtctccaactacagcagcacccgcgagcacacccggcgtcat 610
              ||||||||||||||| |||||||||||||||||||   |||| |||||| ||||||||||
Sbjct: 176437 ggcgaggtgctgaccgtcgtctccaactacagcagtgaccgccagcaca-ccggcgtcat 176495

                             
Query: 611    gggcctggtctacat 625
              ||||||| |||||||
Sbjct: 176496 gggcctgctctacat 176510



 Score =  113 bits (57), Expect = 7e-22
 Identities = 180/221 (81%)
 Strand = Plus / Plus

                                                                          
Query: 2      gagtgcaagtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaag 61
              ||||||||||| ||   ||||||| | || ||||| ||||||||||||| | || | |||
Sbjct: 175602 gagtgcaagtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaag 175661

                                                                          
Query: 62     aactacactggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaaggg 121
               |||||| |||||| ||   ||||||||||||| |||| |||||  || | |||||||| 
Sbjct: 175662 gactacattggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggt 175721

                                                                          
Query: 122    ttcaatggcgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggact 181
              ||||| || ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| |
Sbjct: 175722 ttcaacggtgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagt 175781

                                                       
Query: 182    gacgcggtggtgcctgtcaagatctacatatttgacgttac 222
              || ||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 175782 gatgcggttgtgccagtcaagatttacatatttgatgttac 175822



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                        
Query: 264    aggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgcat 321
              |||||||||| ||||| |||||||||||  | |||||||| ||||| || ||||||||
Sbjct: 175996 aggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgcat 176053
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>gb|AY107588.1| Zea mays PCO070301 mRNA sequence
          Length = 805

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 472 ggaggcagggaacgaggcgaactacatcgtcggcatgtc 510
           |||||| ||| ||||||||  ||||||||||||||||||
Sbjct: 180 ggaggccggggacgaggcgggctacatcgtcggcatgtc 218



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                               
Query: 603 ggcgtcatgggcctggtctacattcctcgtggccga 638
           ||||||||||||||  |||||| |||||||||||||
Sbjct: 310 ggcgtcatgggcctcttctaca-tcctcgtggccga 344
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 535     catcaaggtcagcgacggcgaggtgc 560
               ||||||||||||||||| ||||||||
Sbjct: 2746553 catcaaggtcagcgacgccgaggtgc 2746528
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>gb|BT016757.1| Zea mays clone Contig590 mRNA sequence
          Length = 898

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 535 catcaaggtcagcgacggcgaggtg 559
           ||||||||||||||||| |||||||
Sbjct: 736 catcaaggtcagcgacgacgaggtg 760
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>gb|BT016469.1| Zea mays clone Contig302 mRNA sequence
          Length = 1305

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 535 catcaaggtcagcgacggcgaggtg 559
           ||||||||||||||||| |||||||
Sbjct: 823 catcaaggtcagcgacgacgaggtg 799
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>emb|CT009536.7| Mouse DNA sequence from clone RP23-25A7 on chromosome 14, complete
              sequence
          Length = 239515

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 465    cagggaaggaggcagggaacgaggc 489
              ||||||||||||||||||| |||||
Sbjct: 196641 cagggaaggaggcagggaaggaggc 196665



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 465    cagggaaggaggcagggaacgaggc 489
              ||||||||||||||||||| |||||
Sbjct: 196629 cagggaaggaggcagggaaggaggc 196653
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>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12
          Length = 333800

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 543    tcagcgacggcgaggtgctga 563
              |||||||||||||||||||||
Sbjct: 276651 tcagcgacggcgaggtgctga 276631
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>gb|AY197773.1| Zea mays fructokinase 2 (frk2) mRNA, complete cds
          Length = 1358

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 535 catcaaggtcagcgacggcgaggtg 559
           ||||||||||||||||| |||||||
Sbjct: 726 catcaaggtcagcgacgacgaggtg 750
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>gb|AF457962.1| Zea mays clone csi1n.pk0029.c8, mRNA sequence
          Length = 543

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 535 catcaaggtcagcgacggcgaggtg 559
           ||||||||||||||||| |||||||
Sbjct: 213 catcaaggtcagcgacgacgaggtg 237
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>gb|AC154669.2| Mus musculus BAC clone RP24-289P23 from 14, complete sequence
          Length = 149684

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 465    cagggaaggaggcagggaacgaggc 489
              ||||||||||||||||||| |||||
Sbjct: 111141 cagggaaggaggcagggaaggaggc 111117



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 465    cagggaaggaggcagggaacgaggc 489
              ||||||||||||||||||| |||||
Sbjct: 111129 cagggaaggaggcagggaaggaggc 111105
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>gb|AY112523.1| Zea mays CL966_1 mRNA sequence
          Length = 1528

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 535 catcaaggtcagcgacggcgaggtg 559
           ||||||||||||||||| |||||||
Sbjct: 728 catcaaggtcagcgacgacgaggtg 752
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 548     gacggcgaggtgctgaccatc 568
               |||||||||||||||||||||
Sbjct: 3525151 gacggcgaggtgctgaccatc 3525131
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 279     tcgaggaatgcagcacggaa 298
               ||||||||||||||||||||
Sbjct: 2899951 tcgaggaatgcagcacggaa 2899932
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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 550    cggcgaggtgctgaccatcg 569
              ||||||||||||||||||||
Sbjct: 214643 cggcgaggtgctgaccatcg 214624
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>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
               sequence
          Length = 1632307

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 116     gaagggttcaatggcgaggt 135
               ||||||||||||||||||||
Sbjct: 1140062 gaagggttcaatggcgaggt 1140081
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>dbj|AP008931.1| Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence
          Length = 271577

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 547   cgacggcgaggtgctgacca 566
             ||||||||||||||||||||
Sbjct: 48095 cgacggcgaggtgctgacca 48114
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>gb|AC107623.2| Homo sapiens chromosome 3 clone RP11-648C16, complete sequence
          Length = 176901

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 385   ccagcactctggaggagtcggtgcttct 412
             |||||||||||||||||| ||| |||||
Sbjct: 71904 ccagcactctggaggagtgggttcttct 71877
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>gb|AC096970.2| Homo sapiens chromosome 3 clone RP11-321A23, complete sequence
          Length = 171297

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 385  ccagcactctggaggagtcggtgcttct 412
            |||||||||||||||||| ||| |||||
Sbjct: 6549 ccagcactctggaggagtgggttcttct 6576
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>gb|AC063933.13| Homo sapiens 3 BAC RP11-566A3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168380

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   catccatactaagaccacta 338
             ||||||||||||||||||||
Sbjct: 74582 catccatactaagaccacta 74601
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>gb|AC122918.4| Mus musculus chromosome 6 clone RP23-29F15, complete sequence
          Length = 210315

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     acccagtgtcagctcaagga 117
              ||||||||||||||||||||
Sbjct: 101908 acccagtgtcagctcaagga 101927
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>emb|AL844144.10| Mouse DNA sequence from clone RP23-204D17 on chromosome 2, complete
              sequence
          Length = 178965

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 462    gcacagggaaggaggcaggg 481
              ||||||||||||||||||||
Sbjct: 113838 gcacagggaaggaggcaggg 113857
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>gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromosome unknown, complete
             sequence
          Length = 242530

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   ctggaggagtcggtgcttct 412
             ||||||||||||||||||||
Sbjct: 76412 ctggaggagtcggtgcttct 76431
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>emb|AL627204.7| Mouse DNA sequence from clone RP23-118E21 on chromosome 4, complete
             sequence
          Length = 142447

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 406   tgcttctctgcatggccagg 425
             ||||||||||||||||||||
Sbjct: 45846 tgcttctctgcatggccagg 45865


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,943,716
Number of Sequences: 3902068
Number of extensions: 3943716
Number of successful extensions: 72313
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72022
Number of HSP's gapped (non-prelim): 286
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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