ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags20g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HYPA_CLOPE (Q46205) Protein hypA 31 2.0
2ZP4_FELCA (P48834) Zona pellucida sperm-binding protein 4 precur... 30 3.3
3SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor 30 4.4
4DNLJ_SYNY3 (P72588) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleo... 30 5.7
5V30K_TRVTC (P05078) 29.1 kDa protein 29 9.7
6METX_MANSM (Q65U29) Homoserine O-acetyltransferase (EC 2.3.1.31)... 29 9.7
7LYPD4_HUMAN (Q6UWN0) Ly6/PLAUR domain-containing protein 4 precu... 29 9.7
8ISP4_SCHPO (P40900) Sexual differentiation process protein isp4 29 9.7
9CAN7_MOUSE (Q9R1S8) Calpain-7 (EC 3.4.22.-) (PalB homolog) (PalBH) 29 9.7
10CAN7_HUMAN (Q9Y6W3) Calpain-7 (EC 3.4.22.-) (PalB homolog) (PalBH) 29 9.7

>HYPA_CLOPE (Q46205) Protein hypA|
          Length = 973

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +3

Query: 147 DMPNSLFQGMVEIGRMFY-PEKPPPFLVSQHASHTLQQRMIINDTYALDYIYRKY----K 311
           ++PN  ++  VE  + +Y P     FL       T ++   IN+ Y  ++ Y++     K
Sbjct: 203 EIPNLTYEEFVEFHKKYYHPSNSYIFLYGN--GDTEKELEFINEEYLKNFEYKEIDSEIK 260

Query: 312 EEKSFESM 335
           E+KSFESM
Sbjct: 261 EQKSFESM 268



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>ZP4_FELCA (P48834) Zona pellucida sperm-binding protein 4 precursor (Zona|
           pellucida sperm-binding protein B)
          Length = 570

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 210 PPPFLVSQHASHTLQQRMIINDTYALDYIYRKYKEEKSFESMVQVNISCK-APPPATGTD 386
           PPP L +QH   TL+ ++  +  Y   Y    Y   K     + V +S +    P+ G  
Sbjct: 339 PPPHLKTQHGPLTLELKIAKDKHYGSYYTIGDYPVVKLLRDPIYVEVSIRHRTDPSLG-- 396

Query: 387 MSNHYCW 407
           +  H CW
Sbjct: 397 LLLHNCW 403



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>SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor|
          Length = 263

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 396 GCSCQCPSLEAVPCRRCLPAPSIRNSSPLCTSC 298
           GC C CP+    PC+  +P  +   ++   T+C
Sbjct: 23  GCDCGCPTTSPKPCQTTVPTCAPTTTTTTTTTC 55



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>DNLJ_SYNY3 (P72588) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase|
           [NAD+])
          Length = 669

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 15  APTPASVREHTK-AATEVKLKFRLTIHNPSGRGEINCSINSMIVVDMPNSLFQGMVEIGR 191
           A TP +V E  + A T V+   R T+HN     E++  +   +++     +   +V +  
Sbjct: 335 AVTPLAVMEPVQLAGTTVQ---RATLHNQDRIQELDIRVGDTVIIRKAGEIIPEVVRVMT 391

Query: 192 MFYPEKPPPFLVSQH 236
              PE   P++   H
Sbjct: 392 ELRPENTTPYIFPSH 406



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>V30K_TRVTC (P05078) 29.1 kDa protein|
          Length = 255

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 171 GMVEIGRMFYPEKPPPFLVSQHASHTLQQRMIINDTYALDYIYRKYKEE--KSFESMVQV 344
           G V++ R    E PP F V+     TL  + ++  +  L+ +  + K+E     +S+ +V
Sbjct: 88  GEVDVSRFGESELPPDFEVTFSKVTTLVNKSLVRKSELLEKMNNELKQELTNKLDSLEKV 147

Query: 345 NISCK 359
           N+  K
Sbjct: 148 NVQLK 152



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>METX_MANSM (Q65U29) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 359

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +2

Query: 389 EQPLLLAGGSRLGQAVQXXXXXGYLQEDKRDRLPSCLA 502
           EQPL L  G RLGQ        G L EDK + +  C A
Sbjct: 11  EQPLDLIFGGRLGQIDVAYQTYGTLNEDKSNAVLICHA 48



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>LYPD4_HUMAN (Q6UWN0) Ly6/PLAUR domain-containing protein 4 precursor|
          Length = 246

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 411 PASNNGCSCQCPSLEAVPCRRCLPAPSIRNSSPLCTS 301
           P S    SC CP+      + CLP     NS PL  S
Sbjct: 132 PKSITSASCSCPTCVGEHMKDCLPNFVTTNSCPLAAS 168



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>ISP4_SCHPO (P40900) Sexual differentiation process protein isp4|
          Length = 785

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 183 IGRMFYPEKPPPFLVSQHASHTLQQRMIINDTYALDYIYRK---YKEEKSF 326
           IGR+ +  KP PF V +HA   +   +   + Y+ D I  +   YK+   F
Sbjct: 148 IGRLKFNFKPGPFNVKEHALIVVMSSVSFGNAYSTDIILAQRVHYKQRFGF 198



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>CAN7_MOUSE (Q9R1S8) Calpain-7 (EC 3.4.22.-) (PalB homolog) (PalBH)|
          Length = 813

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
 Frame = +3

Query: 189 RMFYPEKPPPFL--VSQHASHTLQQ-RMIINDTYALDYIYRKYKEEKSFESMVQVNISC- 356
           +++YP  PPP++  +  ++ H L + ++    T+    +  +Y+++ +    V+V  +C 
Sbjct: 617 KVYYPADPPPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTVRVYSACS 676

Query: 357 ----KAPPPAT 377
               K P P T
Sbjct: 677 FTFSKIPSPYT 687



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>CAN7_HUMAN (Q9Y6W3) Calpain-7 (EC 3.4.22.-) (PalB homolog) (PalBH)|
          Length = 813

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
 Frame = +3

Query: 189 RMFYPEKPPPFL--VSQHASHTLQQ-RMIINDTYALDYIYRKYKEEKSFESMVQVNISC- 356
           +++YP  PPP++  +  ++ H L + ++    T+    +  +Y+++ +    V+V  +C 
Sbjct: 617 KVYYPADPPPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTVRVYSACS 676

Query: 357 ----KAPPPAT 377
               K P P T
Sbjct: 677 FTFSKIPSPYT 687


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,096,836
Number of Sequences: 219361
Number of extensions: 1441921
Number of successful extensions: 4397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4384
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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