ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags20g04 |
|---|---|
| Clone Library Name | barley_pub |
>RL13A_PICMA (O65055) 60S ribosomal protein L13a| Length = 206 Score = 295 bits (755), Expect(2) = 8e-80 Identities = 141/158 (89%), Positives = 152/158 (96%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 232 MVSGSG+CAK VVVDARHHMLGRLASI+AKELL+GQRVVVVRCEEICMSGGLVRQKMKYL Sbjct: 1 MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYL 60 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 412 RFLRKRMNTKPSHGPIHFRAP++ILWRTIRGMIPHKT RG AALA L+A+EGVPPPYDR Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRK 120 Query: 413 KRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 KRMVIPDALKVLRLQPGH+YCLLG+LSKEVGW++ DTI Sbjct: 121 KRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTI 158 Score = 21.9 bits (45), Expect(2) = 8e-80 Identities = 9/10 (90%), Positives = 10/10 (100%) Frame = +3 Query: 564 VSYDRRKQLA 593 VSY+RRKQLA Sbjct: 171 VSYERRKQLA 180
>R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2| Length = 206 Score = 290 bits (741), Expect = 3e-78 Identities = 136/158 (86%), Positives = 148/158 (93%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 232 MVSGSG+C+KRVVVDARHHM GRLASI+AKELLNGQ VVVVRCEEIC+SGGLVRQKMKY+ Sbjct: 1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYM 60 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 412 RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT RG AALARLK +EGVPPPYD+ Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKV 120 Query: 413 KRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 KRMVIPDALKVLRLQ GH+YCLLG+LS EVGWN+ DTI Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTI 158
>R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4| Length = 206 Score = 289 bits (740), Expect = 4e-78 Identities = 136/158 (86%), Positives = 148/158 (93%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 232 MVSGSG+C+KRVVVDARHHMLGRLASI AKELLNGQ+VV+VRCEEIC+SGGLVRQKMKY+ Sbjct: 1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYM 60 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 412 RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT RG AALARLK YEGVP PYD+ Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKI 120 Query: 413 KRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 KRMVIPDALKVLRLQ GH+YCLLG+LS EVGWN+ DTI Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTI 158
>R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3| Length = 206 Score = 287 bits (734), Expect = 2e-77 Identities = 135/158 (85%), Positives = 146/158 (92%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 232 MVSGSG+CAKRVVVD RHHMLGRLAS AKELLNGQ VVVVRCEEIC+SGGLVRQKMKY+ Sbjct: 1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYM 60 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 412 RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT RG AALARLK +EG+PPPYD+ Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKI 120 Query: 413 KRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 KRMVIPDALKVLRLQ GH+YCLLG+LS EVGWN+ DTI Sbjct: 121 KRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTI 158
>R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1| Length = 206 Score = 285 bits (730), Expect = 5e-77 Identities = 133/158 (84%), Positives = 147/158 (93%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 232 MVSGSG+CAKRVVVDARHHMLGRLAS+VAK+LLNGQ +VVVRCEEIC+SGGLVRQKMKY+ Sbjct: 1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYM 60 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 412 RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT RG ALARLK +EGVP PYD+ Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKI 120 Query: 413 KRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 KRMV+PDALKVLRLQ GH+YCLLG+LS EVGWN+ DTI Sbjct: 121 KRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTI 158
>RL13A_LUPLU (O49885) 60S ribosomal protein L13a| Length = 205 Score = 278 bits (712), Expect = 7e-75 Identities = 134/158 (84%), Positives = 146/158 (92%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 232 MVSGSG+ AKRVVVDARHHMLGRLASIVAKELLNGQ+VV+VR EEIC+SGGLVRQKMKYL Sbjct: 1 MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYL 60 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 412 RFLRKRMNTKPSHGPIH AP+KI WRT+RGMIPHKT RGE ALARLK YEG+PPP+D+ Sbjct: 61 RFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQ 119 Query: 413 KRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 KR+V+PDALKVLRLQ GH+YCLLGQLS EVGWNY DTI Sbjct: 120 KRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTI 157
>RL13A_CYAPA (P93099) 60S ribosomal protein L13a| Length = 200 Score = 218 bits (555), Expect = 1e-56 Identities = 103/149 (69%), Positives = 124/149 (83%) Frame = +2 Query: 80 KRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNT 259 K VVVD R H+LGRLA+ +AKELLNGQRVV VR EEI +SG L R K+K+ FL+KRMNT Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63 Query: 260 KPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDAL 439 P GP HFR+PA+ILWRTIRGMIPHKT RG AAL RLKA+EGVPPPYD+ KRMVIP AL Sbjct: 64 NPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQAL 123 Query: 440 KVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 +VLRL+PG ++C+LG+L+ EVGW ++D + Sbjct: 124 RVLRLKPGRKFCVLGRLATEVGWRHSDLV 152
>RL13A_SPOFR (Q962U0) 60S ribosomal protein L13A| Length = 204 Score = 204 bits (520), Expect = 1e-52 Identities = 90/154 (58%), Positives = 120/154 (77%) Frame = +2 Query: 65 SGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLR 244 +G K +V+D R H+LGRLA+++AK LL G +VVVVRCE+I +SG R K+K++ FLR Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLR 61 Query: 245 KRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMV 424 KR N P+ GP HFRAP+KILW+T+RGMIPHKT RG++AL RL+AY+G PPPYD +R+V Sbjct: 62 KRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVV 121 Query: 425 IPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 +P AL+V L+PG +YC +G+LS EVGW Y D + Sbjct: 122 VPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVV 155
>RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a| Length = 202 Score = 203 bits (516), Expect = 3e-52 Identities = 92/143 (64%), Positives = 118/143 (82%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 +V+D R H+LGRLA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 6 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 65 Query: 266 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 445 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALKV Sbjct: 66 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKV 125 Query: 446 LRLQPGHRYCLLGQLSKEVGWNY 514 +RL+P ++ LG+L+ EVGW Y Sbjct: 126 VRLKPTRKFAYLGRLAHEVGWKY 148
>RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a| Length = 202 Score = 202 bits (515), Expect = 5e-52 Identities = 92/143 (64%), Positives = 118/143 (82%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 +V+D R H+LGRLA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 6 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSP 65 Query: 266 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 445 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALKV Sbjct: 66 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 125 Query: 446 LRLQPGHRYCLLGQLSKEVGWNY 514 +RL+P ++ LG+L+ EVGW Y Sbjct: 126 VRLKPTRKFAYLGRLAHEVGWKY 148
>RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a| Length = 202 Score = 202 bits (515), Expect = 5e-52 Identities = 92/143 (64%), Positives = 118/143 (82%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 +V+D R H+LGRLA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 6 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 65 Query: 266 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 445 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALKV Sbjct: 66 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 125 Query: 446 LRLQPGHRYCLLGQLSKEVGWNY 514 +RL+P ++ LG+L+ EVGW Y Sbjct: 126 VRLKPTRKFAYLGRLAHEVGWKY 148
>RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly basic protein)| Length = 202 Score = 202 bits (515), Expect = 5e-52 Identities = 92/143 (64%), Positives = 118/143 (82%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 +V+D R H+LGRLA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 6 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 65 Query: 266 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 445 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALKV Sbjct: 66 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 125 Query: 446 LRLQPGHRYCLLGQLSKEVGWNY 514 +RL+P ++ LG+L+ EVGW Y Sbjct: 126 VRLKPTRKFAYLGRLAHEVGWKY 148
>RL13A_RAT (P35427) 60S ribosomal protein L13a| Length = 202 Score = 202 bits (513), Expect = 8e-52 Identities = 92/143 (64%), Positives = 117/143 (81%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 +V+D R H+LGRLA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 6 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 65 Query: 266 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 445 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK +G+PPPYD+ KRMV+P ALKV Sbjct: 66 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKV 125 Query: 446 LRLQPGHRYCLLGQLSKEVGWNY 514 +RL+P ++ LG+L+ EVGW Y Sbjct: 126 VRLKPTRKFAYLGRLAHEVGWKY 148
>RL13A_MOUSE (P19253) 60S ribosomal protein L13a (Transplantation antigen P198)| (Tum-P198 antigen) Length = 202 Score = 201 bits (512), Expect = 1e-51 Identities = 92/143 (64%), Positives = 117/143 (81%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 +V+D R H+LGRLA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 6 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 65 Query: 266 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 445 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK +G+PPPYD+ KRMV+P ALKV Sbjct: 66 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKV 125 Query: 446 LRLQPGHRYCLLGQLSKEVGWNY 514 +RL+P ++ LG+L+ EVGW Y Sbjct: 126 VRLKPTRKFAYLGRLAHEVGWKY 148
>RL13A_CHOPR (Q8MUR4) 60S ribosomal protein L13A| Length = 204 Score = 200 bits (508), Expect = 3e-51 Identities = 87/154 (56%), Positives = 119/154 (77%) Frame = +2 Query: 65 SGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLR 244 +G K +V+D R H+LGRLA+++AK LL G +VVVVRCE++ +SG R K+K++ FLR Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLR 61 Query: 245 KRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMV 424 KR N P+ GP HFRAP+KILW+T+RGMIPHKT RG+ AL RL++Y+G PPPYD +R+V Sbjct: 62 KRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVV 121 Query: 425 IPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 +P AL+V L+PG +YC +G+LS EVGW Y + + Sbjct: 122 VPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVV 155
>RL16A_SCHPO (O42848) 60S ribosomal protein L16-A| Length = 197 Score = 199 bits (505), Expect = 7e-51 Identities = 90/149 (60%), Positives = 119/149 (79%) Frame = +2 Query: 80 KRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNT 259 K VV+DA+ H+LGRLAS+VAK+LL GQ+VVVVRCEE+ +SG R K+KYL +LRK Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65 Query: 260 KPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDAL 439 PS G HFRAP++I + +RGM+PHKTARG+AAL L+A EG+PPP+D+ KR+V+P AL Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125 Query: 440 KVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 +VLRL+PG +YC +G+LS EVGW Y+D + Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIV 154
>RL16_NEUCR (Q9P720) 60S ribosomal protein L16| Length = 202 Score = 198 bits (503), Expect = 1e-50 Identities = 91/148 (61%), Positives = 117/148 (79%), Gaps = 1/148 (0%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 VV+D + H+LGRLASIVAK+LLNGQ++VVVRCE + +SG R K+KY +LRK P Sbjct: 8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNP 67 Query: 266 SHG-PIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 442 + G P HFRAP++I ++ +RGMIPHKTARG AAL RLK +EGVPPPYD+ K+MV+P AL+ Sbjct: 68 TRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALR 127 Query: 443 VLRLQPGHRYCLLGQLSKEVGWNYADTI 526 VLRLQPG ++C +G+LS EVGW Y D + Sbjct: 128 VLRLQPGRKFCTVGRLSSEVGWKYEDVV 155
>RL16B_SCHPO (O42991) 60S ribosomal protein L16-B| Length = 197 Score = 197 bits (502), Expect = 1e-50 Identities = 90/149 (60%), Positives = 118/149 (79%) Frame = +2 Query: 80 KRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNT 259 K VV+DA+ H+LGRLAS+VAK+LL GQ+VVVVRCEE+ +SG R K+KYL +LRK Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65 Query: 260 KPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDAL 439 PS G HFRAP++I + +RGM+PHKTARG+AAL L+A EG+PPP+D+ KR+V+P AL Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125 Query: 440 KVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 +VLRL+PG +YC +G+LS EVGW Y D + Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIV 154
>RL13A_SALTR (Q91487) 60S ribosomal protein L13a (Transplantation antigen P198| homolog) (Fragment) Length = 189 Score = 195 bits (495), Expect = 9e-50 Identities = 89/135 (65%), Positives = 111/135 (82%) Frame = +2 Query: 110 MLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFR 289 +LGRLA+IVA E+L G +VVVVRCE I +SG R K+KYL FLRKRMNT PS GP HFR Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFR 60 Query: 290 APAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHR 469 AP++I WRT+RGM+PHKT RG+AAL RLK ++GVPPPYD+ KRMV+P ALK++RL+P + Sbjct: 61 APSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRK 120 Query: 470 YCLLGQLSKEVGWNY 514 + LLG+L+ EVGW Y Sbjct: 121 FALLGRLAHEVGWKY 135
>RL13A_DROME (Q9VNE9) 60S ribosomal protein L13A| Length = 205 Score = 191 bits (485), Expect = 1e-48 Identities = 85/154 (55%), Positives = 119/154 (77%) Frame = +2 Query: 65 SGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLR 244 +G+ + VV+D R H+LGRLAS+VAK LL G +V VVRCEE+ +SG R K+K+L +LR Sbjct: 2 TGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLR 61 Query: 245 KRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMV 424 KR N P+ GP HFRAP++I ++ +RGMIPHKT RG+AALARL+ ++G+P PYD+ +R+V Sbjct: 62 KRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVV 121 Query: 425 IPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 +P A++VL L+ +YC +G+LS EVGW+Y D I Sbjct: 122 VPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVI 155
>RL16A_YEAST (P26784) 60S ribosomal protein L16-A (L13A) (RP22)| Length = 198 Score = 188 bits (478), Expect = 9e-48 Identities = 85/147 (57%), Positives = 114/147 (77%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 VV+D + H++GRLAS+VAK+LLNGQ++VVVR EE+ +SG R K+KY FLRK Sbjct: 6 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 65 Query: 266 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 445 + GP HFRAP++I ++ +RGM+ HKTARG+AAL RLK +EG+PPPYD+ KR+V+P AL+V Sbjct: 66 TRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRV 125 Query: 446 LRLQPGHRYCLLGQLSKEVGWNYADTI 526 LRL+PG +Y LG+LS VGW Y D + Sbjct: 126 LRLKPGRKYTTLGKLSTSVGWKYEDVV 152
>RL16B_YEAST (P26785) 60S ribosomal protein L16-B (YL15) (RP23)| Length = 197 Score = 188 bits (477), Expect = 1e-47 Identities = 86/147 (58%), Positives = 114/147 (77%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 VV+DA+ H+LGRLAS +AK++LNGQ++VVVR E + +SG R K+KY FLRK Sbjct: 5 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNK 64 Query: 266 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 445 + GP HFRAP++IL++ IRGM+ HKTARG+AAL RLK +EG+PPPYD+ KR+V+P AL+V Sbjct: 65 TRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRV 124 Query: 446 LRLQPGHRYCLLGQLSKEVGWNYADTI 526 LRL+PG +Y LG+LS VGW Y D + Sbjct: 125 LRLKPGRKYTTLGKLSTSVGWKYEDVV 151
>RL16C_SCHPO (O43004) 60S ribosomal protein L16-C| Length = 197 Score = 187 bits (475), Expect = 2e-47 Identities = 84/149 (56%), Positives = 113/149 (75%) Frame = +2 Query: 80 KRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNT 259 K V++DA+ H++GRLAS VAK+LL GQ+VVVVRCEE+ +SG R K+KYL +LRK Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65 Query: 260 KPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDAL 439 PS G HFRAP++I + +RGM+PHKT RG AL L+A EG+PPP+D+ KR+V+P AL Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125 Query: 440 KVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 +VLRL+P +YC +G+LS EVGW Y + + Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIV 154
>RL13A_PIG (Q95307) 60S ribosomal protein L13a (Fragment)| Length = 137 Score = 184 bits (468), Expect = 1e-46 Identities = 86/135 (63%), Positives = 111/135 (82%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 +V+D R H+LGRLA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 62 Query: 266 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 445 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALKV Sbjct: 63 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 122 Query: 446 LRLQPGHRYCLLGQL 490 +RL+ ++ LG+L Sbjct: 123 VRLKLTGKFXYLGRL 137
>RL13A_CAEEL (Q27389) 60S ribosomal protein L13a| Length = 202 Score = 180 bits (456), Expect = 3e-45 Identities = 82/153 (53%), Positives = 111/153 (72%) Frame = +2 Query: 68 GVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRK 247 G+ + +++D ++H+LGRLASIVAK+LL G +VVV+R EEI +SG R K+KY+ FLRK Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61 Query: 248 RMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVI 427 R N P+ G H+RAP KI WRT+RGM+PHKT RG AL L+AYEGVP Y +TK + Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHA 121 Query: 428 PDALKVLRLQPGHRYCLLGQLSKEVGWNYADTI 526 P A + RLQP ++C++G+LS EVGW + D + Sbjct: 122 PSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVV 153
>RL13_ARCFU (O29137) 50S ribosomal protein L13P| Length = 156 Score = 88.2 bits (217), Expect = 2e-17 Identities = 52/140 (37%), Positives = 81/140 (57%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPS 268 V+DA H+LGRL+S +AK LLNG+R+VVV E+ ++G + M + R+ K Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKE 74 Query: 269 HGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVL 448 GP R P +I RT+RGM+P K++RG A RL+ + GVP + I DAL + Sbjct: 75 KGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LE 133 Query: 449 RLQPGHRYCLLGQLSKEVGW 508 ++ +Y L ++S+ +G+ Sbjct: 134 KVSKTDKYVTLAEVSRYLGF 153
>RLSX_METTH (O26146) Fused L13/S9 ribosomal protein [Includes: 50S ribosomal| protein L13P; 30S ribosomal protein S9P] Length = 282 Score = 85.9 bits (211), Expect = 8e-17 Identities = 50/141 (35%), Positives = 84/141 (59%), Gaps = 1/141 (0%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 ++++ H+LGRLAS+V+K+LL G+ V+V+ E+I ++G KY + + + + P Sbjct: 4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNP 63 Query: 266 SH-GPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 442 GP + R P I RT+RGM+P+K ++G A LKAY G+P + + + IPDA K Sbjct: 64 RRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-K 122 Query: 443 VLRLQPGHRYCLLGQLSKEVG 505 ++ G LG++S+ +G Sbjct: 123 AGSIKKGME---LGEISELLG 140
>RL13_PYRAB (Q9V196) 50S ribosomal protein L13P| Length = 142 Score = 82.8 bits (203), Expect = 7e-16 Identities = 53/142 (37%), Positives = 79/142 (55%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPS 268 +++A +LGRLAS VAK LL G+ VV+V E+ ++G KY + R T P Sbjct: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62 Query: 269 HGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVL 448 GP + + +I+ RTIRGM+P KT RG A RLK Y G+P + + I +A V Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVS 121 Query: 449 RLQPGHRYCLLGQLSKEVGWNY 514 RL +Y +G+++K +G + Sbjct: 122 RLS-RPKYVTVGEVAKFLGGKF 142
>RL13_PYRHO (O59300) 50S ribosomal protein L13P| Length = 142 Score = 82.4 bits (202), Expect = 9e-16 Identities = 53/142 (37%), Positives = 79/142 (55%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPS 268 +++A +LGRLAS VAK LL G+ VV+V E+ ++G KY + R T P Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62 Query: 269 HGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVL 448 GP + + +I+ RTIRGM+P KT RG A RLK Y G+P + + I +A V Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVS 121 Query: 449 RLQPGHRYCLLGQLSKEVGWNY 514 RL +Y +G+++K +G + Sbjct: 122 RLS-RPKYVTVGEVAKFLGGKF 142
>RL13_AERPE (Q9YB50) 50S ribosomal protein L13P| Length = 155 Score = 79.0 bits (193), Expect = 1e-14 Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 2/146 (1%) Frame = +2 Query: 77 AKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMN 256 A+ +VVD ++GRLAS+VAK LL G RV VV E+I +SG R ++ R + Sbjct: 8 AREIVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGD-PRMVVESYRTTVLGVK 66 Query: 257 TKPSH--GPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIP 430 + SH P R P ++ +RGM+P ARG ALARL+ Y GVP + + P Sbjct: 67 SHFSHKWRPKRPRTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVPDELKGREFVRFP 126 Query: 431 DALKVLRLQPGHRYCLLGQLSKEVGW 508 +A RL Y LG +++++GW Sbjct: 127 EA-DASRL--SSHYIELGAVARQLGW 149
>RL13_HALMA (P29198) 50S ribosomal protein L13P (Hmal13)| Length = 145 Score = 73.2 bits (178), Expect = 5e-13 Identities = 50/142 (35%), Positives = 78/142 (54%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 V+VDAR ++GR+AS VA++ L+G+ V VV E ++G + KY KR++ Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRVDIGN 65 Query: 266 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 445 +G + + P I RTIRGM+PHK RG A ++ Y G PYD ++ D + Sbjct: 66 DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG--NPYDEDGEVL--DGTSL 121 Query: 446 LRLQPGHRYCLLGQLSKEVGWN 511 RL ++ LG++S+ +G N Sbjct: 122 DRLS-NIKFVTLGEISETLGAN 142
>RL13_SULSO (P95991) 50S ribosomal protein L13P| Length = 149 Score = 72.4 bits (176), Expect = 9e-13 Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 1/143 (0%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 V+++A +LGR+AS V + L G++V++V E+ +SG R Y L + P Sbjct: 10 VIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNP 69 Query: 266 SHGPIHF-RAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 442 I R+P I+ RTIRGM+P K+++G L +K Y GVP ++ + + PD+ Sbjct: 70 YRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDS-D 127 Query: 443 VLRLQPGHRYCLLGQLSKEVGWN 511 V RL+ +Y + +SKE+GW+ Sbjct: 128 VSRLK--GKYVTVEVVSKELGWS 148
>RL13_METJA (P54023) 50S ribosomal protein L13P| Length = 137 Score = 70.5 bits (171), Expect = 4e-12 Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 1/140 (0%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPS 268 V+DA +LGRLAS VAK +L G+ +V+V E + ++G Y K+ P Sbjct: 3 VIDAEGAILGRLASEVAKRVLRGEEIVIVNAEMVVITGNKDWIIKTYQEEREKKNVANPR 62 Query: 269 H-GPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 445 GP R P IL RTIR M+P+K +G A R+K Y G P K + + + K+ Sbjct: 63 RFGPKFPRRPDDILRRTIRKMLPYKKPKGREAFKRVKVYVGNP------KNLTVDE--KI 114 Query: 446 LRLQPGHRYCLLGQLSKEVG 505 +Y L +LSK +G Sbjct: 115 SHKLNTTKYITLAELSKHLG 134
>RL13_HALSA (Q9HQJ3) 50S ribosomal protein L13P| Length = 145 Score = 68.2 bits (165), Expect = 2e-11 Identities = 50/142 (35%), Positives = 71/142 (50%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 265 VVVDAR ++GR+AS VA+ L G RV VV E+ ++G + R R N Sbjct: 10 VVVDARDCIMGRVASNVAERALAGDRVAVVNAEQAVITG----TEDDVFSTYRTRANLGS 65 Query: 266 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 445 GP + + P I R IRGM+P+K G AL ++ Y G P D + D + Sbjct: 66 DRGPYYPKRPDGIFKRAIRGMLPYKQDDGREALDSVRVYVGNPMDEDGD----VLDGTSL 121 Query: 446 LRLQPGHRYCLLGQLSKEVGWN 511 RL R+ L ++S+E+G N Sbjct: 122 DRLST-IRFVTLSEVSEELGAN 142
>RL13_SULAC (P39473) 50S ribosomal protein L13P| Length = 148 Score = 67.4 bits (163), Expect = 3e-11 Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 1/141 (0%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKY-LRFLRKRMNTK 262 V+VDA + +LGR+++ +AK L +G++V VV E+ +SG R Y L F K M Sbjct: 8 VIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVKTMQNP 67 Query: 263 PSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 442 G R P I+ RT+RGM+P K G+ LKAY G+P + K M+ D Sbjct: 68 YRQGIRRPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGIPKELE-GKSMIRFDDAD 125 Query: 443 VLRLQPGHRYCLLGQLSKEVG 505 V RL+ +Y + +LS+ +G Sbjct: 126 VSRLK--GKYITVAELSRLLG 144
>RL13_THEMA (Q9X1G5) 50S ribosomal protein L13| Length = 149 Score = 48.1 bits (113), Expect = 2e-05 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 20/141 (14%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 196 M+ V K VVDA +LGRLA+ +AK L+ G V+VV +++ + Sbjct: 12 MIKPEEVERKWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVL 71 Query: 197 SGGLVRQKMKY--------LRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARG 352 +G + QK+ Y L+ L R + + P +++W ++ M+P K +G Sbjct: 72 TGKKLDQKVYYWHSGYPGGLKSLTARQMLE--------KHPERLIWLAVKRMLP-KNRKG 122 Query: 353 EAALARLKAYEGVPPPYDRTK 415 L RLK Y P+ K Sbjct: 123 RKMLKRLKVYASPEHPHQAQK 143
>RK13_SPIOL (P12629) 50S ribosomal protein L13, chloroplast precursor (CL13)| Length = 250 Score = 45.8 bits (107), Expect = 9e-05 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 12/138 (8%) Frame = +2 Query: 80 KRVVVDARHHMLGRLASIVA-----KELLN-------GQRVVVVRCEEICMSGGLVRQKM 223 K VVDA +LGR+AS +A K L + G V+VV +++ +SG QK+ Sbjct: 113 KWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKL 172 Query: 224 KYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPY 403 R + + + R P +I+ +RGM+P K G LK Y+G P+ Sbjct: 173 YRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRYLFNHLKVYKGAEHPH 231 Query: 404 DRTKRMVIPDALKVLRLQ 457 + + +P K +R++ Sbjct: 232 QAQQPIDLPLRDKRIRVE 249
>RL13_STAS1 (Q49ZD6) 50S ribosomal protein L13| Length = 145 Score = 44.3 bits (103), Expect = 3e-04 Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 12/129 (9%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 196 M + S + K V+DA LGRL+S VA L G V+V+ +I Sbjct: 6 MANESNIERKWYVIDAEGKTLGRLSSEVAAILRGKNKVTYTPHVDTGDYVIVINASKIHF 65 Query: 197 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLK 376 +G R KM Y S G + P ++L +I+GM+P T GE +L Sbjct: 66 TGNKERDKMYYRHSNHPGGIKSISAGELKANNPERLLENSIKGMLP-STRLGEKQGKKLF 124 Query: 377 AYEGVPPPY 403 Y G P+ Sbjct: 125 VYGGAEHPH 133
>RL13_DEIRA (Q9RXY1) 50S ribosomal protein L13| Length = 174 Score = 44.3 bits (103), Expect = 3e-04 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 14/128 (10%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAK------------ELLNGQRVVVVRCEEICMSGGLVRQKMKY 229 VVVDA LGRLA+++A ++ G VVV+ ++ ++G + K+ Y Sbjct: 42 VVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKV-Y 100 Query: 230 LRF--LRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPY 403 R+ + + T+ + + + P +++ + GM+P K +G A RLK Y G P+ Sbjct: 101 TRYTGYQGGLKTETAREALS-KHPERVIEHAVFGMLP-KGRQGRAMHTRLKVYAGETHPH 158 Query: 404 DRTKRMVI 427 K V+ Sbjct: 159 SAQKPQVL 166
>RL13_STRCO (Q53874) 50S ribosomal protein L13| Length = 147 Score = 44.3 bits (103), Expect = 3e-04 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 12/117 (10%) Frame = +2 Query: 89 VVDARHHMLGRLAS------------IVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 232 V+DA+ +LGRLA+ I A + G V+++ +++ +SG QKM Y Sbjct: 17 VIDAQDVVLGRLATTAASILRGKHKPIYAPHVDTGDFVIIINADKVHLSGNKRTQKMAYR 76 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPY 403 + + + P K + + I+GM+P K + G L++LK Y+G P+ Sbjct: 77 HSGYPGGLRSVRYDELLDKNPEKAVEKAIKGMLP-KNSLGRQMLSKLKVYKGDQHPH 132
>RL13_SYNY3 (P73294) 50S ribosomal protein L13| Length = 151 Score = 43.1 bits (100), Expect = 6e-04 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 12/120 (10%) Frame = +2 Query: 80 KRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKM 223 K V+DA LGRLA+ VA L G V+++ E+I ++G QK+ Sbjct: 15 KWYVIDAEGQRLGRLATEVATILRGKNKPTFTPHMDTGDFVIIINAEKIEVTGRKREQKL 74 Query: 224 KYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPY 403 R + + + R P +I+ +RGM+P K + G +LK Y G P+ Sbjct: 75 YRRHSGRPGGMKEETFEKLQVRLPERIVESAVRGMLP-KNSLGRKLFTKLKVYAGPSHPH 133
>RL13_BACSU (P70974) 50S ribosomal protein L13| Length = 145 Score = 42.7 bits (99), Expect = 8e-04 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 14/135 (10%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 196 M + S + K +VVDA LGRL+S VA L G V+++ E+I + Sbjct: 6 MANASTIERKCLVVDAAGKTLGRLSSEVAAILRGKHKPTYTPHVDTGDHVIIINAEKIEL 65 Query: 197 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRA--PAKILWRTIRGMIPHKTARGEAALAR 370 +G + K+ Y R + K S + R P K+L I+GM+P K + G + Sbjct: 66 TGKKLTDKI-YYRHTQHPGGLK-SRTALEMRTNYPEKMLELAIKGMLP-KGSLGRQMFKK 122 Query: 371 LKAYEGVPPPYDRTK 415 L Y G P++ K Sbjct: 123 LNVYRGSEHPHEAQK 137
>RL13_MYCLE (P38014) 50S ribosomal protein L13| Length = 147 Score = 41.2 bits (95), Expect = 0.002 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 12/130 (9%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYL 232 V+DA +LGRLA++ A L G V+V+ +++ +SG V+ KM Y Sbjct: 17 VIDATDVVLGRLAAVAATLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKVQHKMVYR 76 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 412 K + G + + P +++ + I GM+P K +L+ Y G P + + Sbjct: 77 HSGYPGGLRKRTIGELMQKHPDRVVEKAIVGMLP-KNKLSRQIQRKLRVYAG--PDHPHS 133 Query: 413 KRMVIPDALK 442 + +P +K Sbjct: 134 AQQPVPFEIK 143
>RL13_STAEQ (Q5HM31) 50S ribosomal protein L13| Length = 145 Score = 41.2 bits (95), Expect = 0.002 Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 12/129 (9%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 196 M + S + K V+DA LGRL+S VA L G V+++ +I Sbjct: 6 MANESNIERKWYVIDAEGQTLGRLSSEVAAILRGKNKVTYTPHVDTGDYVIIINASKIEF 65 Query: 197 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLK 376 +G + KM Y S G + P ++L +I+GM+P T GE +L Sbjct: 66 TGNKEQDKMYYRHSNHPGGLKSISAGELKRTNPERLLETSIKGMLP-STRLGEKQGKKLF 124 Query: 377 AYEGVPPPY 403 Y G P+ Sbjct: 125 VYGGAEHPH 133
>RK13_GUITH (O46915) Chloroplast 50S ribosomal protein L13| Length = 143 Score = 39.3 bits (90), Expect = 0.009 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 12/121 (9%) Frame = +2 Query: 80 KRVVVDARHHMLGRLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKM 223 K ++DA LGRLAS AK L+ +V++ ++I ++G K Sbjct: 15 KWFIIDATDKNLGRLASETAKTLVGKYDPLYAPNVNPKNIIVIINADKIRVTGNKKFDKF 74 Query: 224 KYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPY 403 Y + T + + R P +IL + ++G++P K G LK Y G P+ Sbjct: 75 YYRHSGQVGGLTIETFNELQSRLPGRILEKAVKGILP-KGPLGRELFNNLKVYAGSSHPH 133 Query: 404 D 406 + Sbjct: 134 E 134
>RL13_STAES (Q8CRI9) 50S ribosomal protein L13| Length = 145 Score = 39.3 bits (90), Expect = 0.009 Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 12/129 (9%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 196 M + S + K V+DA LGRL+S VA L G V+++ +I Sbjct: 6 MANESNIERKWYVIDAEGQTLGRLSSEVAAILRGKNKVTYTPHVDTGDYVIIINASKIEF 65 Query: 197 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLK 376 +G + KM + S G + P ++L +I+GM+P T GE +L Sbjct: 66 TGNKEQDKMYHRHSNHPGGLKSISAGELKRTNPERLLETSIKGMLP-STRLGEKQGKKLF 124 Query: 377 AYEGVPPPY 403 Y G P+ Sbjct: 125 VYGGAEHPH 133
>RL13_AQUAE (O67722) 50S ribosomal protein L13| Length = 144 Score = 38.9 bits (89), Expect = 0.011 Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 22/131 (16%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKMKYL 232 VVDA LGRLAS +AK L G V+V+ E+I ++G + QK Y Sbjct: 17 VVDATGKTLGRLASEIAKILRGKHKPYYQPDVDCGDFVIVINAEKIRVTGKKLEQKKYYW 76 Query: 233 ----------RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAY 382 R L+ + KP +++ ++ M+P K G L +LK Y Sbjct: 77 HSRYPGGLKERTLKWMLENKPE----------EVIRLAVKRMLP-KNRLGHRMLKKLKVY 125 Query: 383 EGVPPPYDRTK 415 G P+ K Sbjct: 126 RGPEHPHQAQK 136
>RM23_YEAST (Q12487) 60S ribosomal protein L23, mitochondrial precursor (YmL23)| Length = 163 Score = 38.9 bits (89), Expect = 0.011 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 19/129 (14%) Frame = +2 Query: 113 LGRLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKMKYLRFLRK-RM 253 LGRLAS +A L+ G VVV C++I ++G QK + R ++ Sbjct: 28 LGRLASAIAITLIGRHKPVYHPSQDCGDYVVVTNCQKIRVTGKKFEQKTYWSHSGRPGQL 87 Query: 254 NTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT------K 415 + + + + +IL + + GM+P R + L RLK ++G PY + + Sbjct: 88 KLQTMNKVVADKGFGEILKKAVSGMLPKNKLR-KQRLDRLKVFDGSENPYKQNITAFAHE 146 Query: 416 RMVIPDALK 442 + IP+ LK Sbjct: 147 QSSIPEPLK 155
>RL13_STAAW (Q7A089) 50S ribosomal protein L13| Length = 145 Score = 38.5 bits (88), Expect = 0.015 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 12/129 (9%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 196 M + S + K V+DA LGRL+S VA L G V+V+ +I Sbjct: 6 MANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEF 65 Query: 197 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLK 376 +G K+ Y + G + P +++ +I+GM+P T GE +L Sbjct: 66 TGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLP-STRLGEKQGKKLF 124 Query: 377 AYEGVPPPY 403 Y G P+ Sbjct: 125 VYGGAEHPH 133
>RL13_STAAS (Q6G7A3) 50S ribosomal protein L13| Length = 145 Score = 38.5 bits (88), Expect = 0.015 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 12/129 (9%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 196 M + S + K V+DA LGRL+S VA L G V+V+ +I Sbjct: 6 MANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEF 65 Query: 197 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLK 376 +G K+ Y + G + P +++ +I+GM+P T GE +L Sbjct: 66 TGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLP-STRLGEKQGKKLF 124 Query: 377 AYEGVPPPY 403 Y G P+ Sbjct: 125 VYGGAEHPH 133
>RL13_STAAR (Q6GEL7) 50S ribosomal protein L13| Length = 145 Score = 38.5 bits (88), Expect = 0.015 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 12/129 (9%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 196 M + S + K V+DA LGRL+S VA L G V+V+ +I Sbjct: 6 MANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEF 65 Query: 197 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLK 376 +G K+ Y + G + P +++ +I+GM+P T GE +L Sbjct: 66 TGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLP-STRLGEKQGKKLF 124 Query: 377 AYEGVPPPY 403 Y G P+ Sbjct: 125 VYGGAEHPH 133
>RL13_STAAN (Q7A473) 50S ribosomal protein L13| Length = 145 Score = 38.5 bits (88), Expect = 0.015 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 12/129 (9%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 196 M + S + K V+DA LGRL+S VA L G V+V+ +I Sbjct: 6 MANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEF 65 Query: 197 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLK 376 +G K+ Y + G + P +++ +I+GM+P T GE +L Sbjct: 66 TGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLP-STRLGEKQGKKLF 124 Query: 377 AYEGVPPPY 403 Y G P+ Sbjct: 125 VYGGAEHPH 133
>RL13_STAAM (Q99S51) 50S ribosomal protein L13| Length = 145 Score = 38.5 bits (88), Expect = 0.015 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 12/129 (9%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 196 M + S + K V+DA LGRL+S VA L G V+V+ +I Sbjct: 6 MANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEF 65 Query: 197 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLK 376 +G K+ Y + G + P +++ +I+GM+P T GE +L Sbjct: 66 TGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLP-STRLGEKQGKKLF 124 Query: 377 AYEGVPPPY 403 Y G P+ Sbjct: 125 VYGGAEHPH 133
>RL13_STAAC (Q5HDZ0) 50S ribosomal protein L13| Length = 145 Score = 38.5 bits (88), Expect = 0.015 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 12/129 (9%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 196 M + S + K V+DA LGRL+S VA L G V+V+ +I Sbjct: 6 MANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEF 65 Query: 197 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLK 376 +G K+ Y + G + P +++ +I+GM+P T GE +L Sbjct: 66 TGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLP-STRLGEKQGKKLF 124 Query: 377 AYEGVPPPY 403 Y G P+ Sbjct: 125 VYGGAEHPH 133
>RL13_THET8 (P60488) 50S ribosomal protein L13| Length = 140 Score = 38.5 bits (88), Expect = 0.015 Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 23/143 (16%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKMKY 229 V++DA LGRLA+ +A L G VVVV ++I ++G + QK+ Y Sbjct: 14 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI-Y 72 Query: 230 LRF-----------LRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLK 376 R+ L K + T P ++L ++GM+P K G RLK Sbjct: 73 TRYSGYPGGLKKIPLEKMLATHPE----------RVLEHAVKGMLP-KGPLGRRLFKRLK 121 Query: 377 AYEGVPPPYDRTKRMVIPDALKV 445 Y G P+ + P+ L+V Sbjct: 122 VYAGPDHPHQAQR----PEKLEV 140
>RL13_STACA (Q00990) 50S ribosomal protein L13| Length = 145 Score = 38.1 bits (87), Expect = 0.019 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 12/129 (9%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 196 M + S + K V+DA LGRL+S VA L +G V+++ +I M Sbjct: 6 MANESNIERKWYVIDAAGQTLGRLSSEVASILRGKHKATYTPHVDSGDYVIIINAGQIEM 65 Query: 197 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLK 376 +G K+ Y + G + + P ++L +I+GM+P + GE +L Sbjct: 66 TGKKASDKVYYRHSNYPGGIKSITAGELREKNPERLLEISIKGMLP-SSRLGEKQGKKLF 124 Query: 377 AYEGVPPPY 403 Y G P+ Sbjct: 125 VYGGAEHPH 133
>RL13_CHLTR (O84127) 50S ribosomal protein L13| Length = 150 Score = 38.1 bits (87), Expect = 0.019 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 13/113 (11%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKM-KY 229 VV+A LGRL+S VAK L G V+V+ E++ ++G QK+ Y Sbjct: 24 VVNAEGKTLGRLSSEVAKILRGKHKVTFTPHVAMGDGVIVINAEKVRLTGAKRAQKVYHY 83 Query: 230 LRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEG 388 M P I R PA ++ ++GM+P KT G + L+ +G Sbjct: 84 YTGFISGMREVPFENMI-ARKPAYVIEHAVKGMLP-KTKLGRRQMKSLRVLKG 134
>RL13_CHLMU (Q9PKR3) 50S ribosomal protein L13| Length = 150 Score = 37.7 bits (86), Expect = 0.025 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 13/113 (11%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKM-KY 229 V++A LGRL+S VAK L G V+V+ E++ ++G QK+ Y Sbjct: 24 VINAEGKTLGRLSSEVAKILRGKHKVTFTPHVAMGDGVIVINAEKVRLTGAKRAQKVYHY 83 Query: 230 LRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEG 388 M P I R PA ++ ++GM+P KT G + L+ +G Sbjct: 84 YTGFISGMREVPFENMI-ARKPAYVIEHAVKGMLP-KTKLGRRQMKSLRVVKG 134
>RL13_STAHJ (Q4L881) 50S ribosomal protein L13| Length = 145 Score = 37.0 bits (84), Expect = 0.043 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 12/129 (9%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 196 M + S + K V+DA LGRL+S VA L G V+++ +I + Sbjct: 6 MANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIIINAAKIEL 65 Query: 197 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLK 376 +G K+ Y + G + P ++L +I+GM+P + GE +L Sbjct: 66 TGKKESDKIYYRHSNHPGGIKSVTAGELKRNNPERLLETSIKGMLP-SSRLGEKQGKKLF 124 Query: 377 AYEGVPPPY 403 Y G P+ Sbjct: 125 VYGGAEHPH 133
>RL13_RHOPA (Q6N651) 50S ribosomal protein L13 (RRP-L13)| Length = 154 Score = 37.0 bits (84), Expect = 0.043 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 13/125 (10%) Frame = +2 Query: 71 VCAKRVVVDARHHMLGRLASIVAKELLN------------GQRVVVVRCEEICMSGGLVR 214 V K V++DA ++GRLA++VA L G V+++ ++ ++G Sbjct: 11 VTKKWVIIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIINASKVVLTGRKRD 70 Query: 215 QKMKYLRF-LRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGV 391 K+ Y + + + + R P +++ + I MIP + G + L+ Y G Sbjct: 71 NKVYYHHTGFIGGIKERSAKAILEGRFPERVVEKAIERMIP-RGPLGRVQMGNLRVYPGA 129 Query: 392 PPPYD 406 P++ Sbjct: 130 EHPHE 134
>RL13_CHLPN (Q9Z8T7) 50S ribosomal protein L13| Length = 149 Score = 37.0 bits (84), Expect = 0.043 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 13/125 (10%) Frame = +2 Query: 53 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLN------------GQRVVVVRCEEICM 196 +V S VVDA LGRL+S VAK L G V+V+ E++ + Sbjct: 11 IVKSSETTKSWYVVDAAGKTLGRLSSEVAKILRGKHKVTYTPHVAMGDGVIVINAEKVRL 70 Query: 197 SGGLVRQKM-KYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARL 373 +G QK+ +Y M P + R P I+ I+GM+P +T G+ L L Sbjct: 71 TGAKKGQKIYRYYTGYISGMREIPFEN-MMARKPNYIIEHAIKGMMP-RTRLGKKQLKSL 128 Query: 374 KAYEG 388 + +G Sbjct: 129 RIVKG 133
>RL13_TREPA (O83988) 50S ribosomal protein L13| Length = 142 Score = 36.6 bits (83), Expect = 0.056 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 12/118 (10%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKMKYL 232 ++DA LGR+A+ VA L G VVV+ E++ +SG + KM Y Sbjct: 17 LIDAAGRPLGRVAARVACLLRGKHKASYTPNQEMGDYVVVINAEKVFLSGTKPKDKMYYR 76 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYD 406 S + R P + L ++GM+P K G + +K Y G P++ Sbjct: 77 HSGYPGGLKSVSFSALVKRRPVEPLRHAVKGMLP-KGPLGRKLIKNVKIYAGSVHPHE 133
>RL13_HELPY (P56038) 50S ribosomal protein L13| Length = 141 Score = 36.6 bits (83), Expect = 0.056 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 12/118 (10%) Frame = +2 Query: 86 VVVDARHHMLGRLASIVAKELLNGQR------------VVVVRCEEICMSGGLVRQKMKY 229 VV+DA+ + GRL + +A L R VVV+ ++ SG + K + Sbjct: 15 VVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEYF 74 Query: 230 LRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPY 403 + + +AP K+ +RGM+P KT G+A + +LK Y P+ Sbjct: 75 THSGYFGSTKSKTLQEMLEKAPEKLYHLAVRGMLP-KTKLGKAMIKKLKVYRDDKHPH 131
>RL13_SHIFL (P0AA15) 50S ribosomal protein L13| Length = 142 Score = 35.8 bits (81), Expect = 0.096 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 12/112 (10%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYL 232 VVDA LGRLA+ +A+ L G ++V+ +++ ++G K+ Y Sbjct: 17 VVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYH 76 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEG 388 + + + R P +++ ++GM+P K G A +LK Y G Sbjct: 77 HTGHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAG 127
>RL13_SALTY (P0AA13) 50S ribosomal protein L13| Length = 142 Score = 35.8 bits (81), Expect = 0.096 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 12/112 (10%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYL 232 VVDA LGRLA+ +A+ L G ++V+ +++ ++G K+ Y Sbjct: 17 VVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYH 76 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEG 388 + + + R P +++ ++GM+P K G A +LK Y G Sbjct: 77 HTGHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAG 127
>RL13_SALTI (P0AA14) 50S ribosomal protein L13| Length = 142 Score = 35.8 bits (81), Expect = 0.096 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 12/112 (10%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYL 232 VVDA LGRLA+ +A+ L G ++V+ +++ ++G K+ Y Sbjct: 17 VVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYH 76 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEG 388 + + + R P +++ ++GM+P K G A +LK Y G Sbjct: 77 HTGHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAG 127
>RL13_ECOLI (P0AA10) 50S ribosomal protein L13| Length = 142 Score = 35.8 bits (81), Expect = 0.096 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 12/112 (10%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYL 232 VVDA LGRLA+ +A+ L G ++V+ +++ ++G K+ Y Sbjct: 17 VVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYH 76 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEG 388 + + + R P +++ ++GM+P K G A +LK Y G Sbjct: 77 HTGHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAG 127
>RL13_ECOL6 (P0AA11) 50S ribosomal protein L13| Length = 142 Score = 35.8 bits (81), Expect = 0.096 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 12/112 (10%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYL 232 VVDA LGRLA+ +A+ L G ++V+ +++ ++G K+ Y Sbjct: 17 VVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYH 76 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEG 388 + + + R P +++ ++GM+P K G A +LK Y G Sbjct: 77 HTGHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAG 127
>RL13_ECO57 (P0AA12) 50S ribosomal protein L13| Length = 142 Score = 35.8 bits (81), Expect = 0.096 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 12/112 (10%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYL 232 VVDA LGRLA+ +A+ L G ++V+ +++ ++G K+ Y Sbjct: 17 VVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYH 76 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEG 388 + + + R P +++ ++GM+P K G A +LK Y G Sbjct: 77 HTGHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAG 127
>RL13_HAEIN (P44387) 50S ribosomal protein L13| Length = 142 Score = 35.4 bits (80), Expect = 0.13 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%) Frame = +2 Query: 89 VVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYL 232 VVDA LGRLA+ +A+ L G ++V+ +++ ++G K+ Y Sbjct: 17 VVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYW 76 Query: 233 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEG 388 + + + R P ++ ++GM+P K G A +LK Y G Sbjct: 77 HTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLP-KGPLGRAMFRKLKVYAG 127
>IRX4_CHICK (Q9YGS0) Iroquois-class homeodomain protein IRX-4 (Iroquois| homeobox protein 4) Length = 485 Score = 33.5 bits (75), Expect = 0.48 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Frame = +1 Query: 268 PRPHPLPRPGQDPLAHHPRYDSAQDRE----GRGRACQAQGVRGCAAAV 402 P PHPLP G P A P +A++ E R R C C AA+ Sbjct: 279 PHPHPLPGGGPPPRAAEPPAAAAEEEEEEAAERARGCLKPAAEECEAAL 327
>IER5_MOUSE (O89113) Immediate early response gene 5 protein| Length = 308 Score = 32.3 bits (72), Expect = 1.1 Identities = 23/78 (29%), Positives = 31/78 (39%) Frame = +1 Query: 268 PRPHPLPRPGQDPLAHHPRYDSAQDREGRGRACQAQGVRGCAAAVRQDQAHGHSRRAQGS 447 P P P P+P + + H P G G + V G A+R + + S Sbjct: 98 PEPQPQPQPQRPSVCHTP---------GAGSSEPVAAVAGSGEALRGGE--------EDS 140 Query: 448 EAAAWAQVLPPGPALQGG 501 AAAW +V P A GG Sbjct: 141 AAAAWGRVERPRAASSGG 158
>RL13_BUCBP (Q89AE6) 50S ribosomal protein L13| Length = 144 Score = 31.6 bits (70), Expect = 1.8 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 12/109 (11%) Frame = +2 Query: 92 VDARHHMLGRLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKMKYLR 235 +DA +LGRLA+ +A L G ++V+ + I ++G K Y Sbjct: 20 IDATGKILGRLATNIASRLRGKHKVEYTPHVDIGDYLIVINAKNIKVTGKKCTDKFYYHH 79 Query: 236 FLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAY 382 K + + R P +I+ +RGM+P K G + +LK Y Sbjct: 80 TGYVGGLKKIAFKDMLHRYPERIIEIAVRGMLP-KGPLGRSMFKKLKVY 127
>IF2_METCA (Q609C0) Translation initiation factor IF-2| Length = 868 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +1 Query: 265 IPRPHPLPRPGQDPLAHHPRYDSAQDREGRGRACQAQGVRGCAAAVRQDQ 414 IPRP P PRP P A P+ ++ + R +A+G + A R+D+ Sbjct: 195 IPRPAPEPRPPARPSAGKPKAEAPRAHPAE-RETEARGDKRSAGLSRKDE 243
>ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII subunit A3| (Elongin A3) (EloA3) (Transcription elongation factor B polypeptide 3C) Length = 546 Score = 30.4 bits (67), Expect = 4.0 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 4/85 (4%) Frame = +1 Query: 268 PRPHPLPRPGQDPLAHHPRYDSAQDREGRGRACQAQG----VRGCAAAVRQDQAHGHSRR 435 P P R P+ P ++ GRG A AQG +GC + + HS+ Sbjct: 167 PHRDPPTRTAPLPMPEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKG 226 Query: 436 AQGSEAAAWAQVLPPGPALQGGRME 510 + S A+ AQ PP Q R++ Sbjct: 227 HKSSRGAS-AQKSPPVQESQSERLQ 250
>WWTR1_MOUSE (Q9EPK5) WW domain-containing transcription regulator protein 1| (Transcriptional coactivator with PDZ-binding motif) Length = 395 Score = 30.0 bits (66), Expect = 5.3 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 6/89 (6%) Frame = +1 Query: 274 PHPLPRPGQDPLAHHPRYDSAQDREGRGRACQAQGVRGCAAAV------RQDQAHGHSRR 435 PHPLP PGQ + H D D E + + ++ + HSR+ Sbjct: 7 PHPLPPPGQQVI--HVTQDLDTDLEALFNSVMNPKPSSWRKKILPESFFKEPDSGSHSRQ 64 Query: 436 AQGSEAAAWAQVLPPGPALQGGRMELRRH 522 + + PGP L GG +R H Sbjct: 65 SSTDSSGG-----HPGPRLAGGAQHVRSH 88
>APXL_HUMAN (Q13796) Apical-like protein (APXL protein)| Length = 1616 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Frame = +1 Query: 280 PLPRPGQDPLAHHPRYDSAQDREGRGRACQA-QGVRGCAAAVRQDQAHGHSRRAQGSEAA 456 P P GQ P H P+ + D GR +G GC+A ++ + +A AA Sbjct: 508 PPPTVGQSPRHHLPQPEGPPDARETGRCYPLDKGAEGCSAGAQEPPRASRAEKASQRLAA 567 Query: 457 A--WA 465 + WA Sbjct: 568 SITWA 572
>Y2023_MYCBO (P64918) Hypothetical protein Mb2023| Length = 537 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = -2 Query: 466 VPRLQPQNLERVGNDHALGPVVRRRHTLVRLEPGKRGLAPRGLVRNHTADGAPE 305 V L+ + L R+ + +G V R T + L+ G P L + TADGAP+ Sbjct: 348 VSHLELEQLRRIRDIVRMGHVQRIEPTTIVLDGGSVPATPTALYIDCTADGAPQ 401
>Y2000_MYCTU (P64917) Hypothetical protein Rv2000/MT2056| Length = 537 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = -2 Query: 466 VPRLQPQNLERVGNDHALGPVVRRRHTLVRLEPGKRGLAPRGLVRNHTADGAPE 305 V L+ + L R+ + +G V R T + L+ G P L + TADGAP+ Sbjct: 348 VSHLELEQLRRIRDIVRMGHVQRIEPTTIVLDGGSVPATPTALYIDCTADGAPQ 401
>RL13_BUCAP (Q8K9F9) 50S ribosomal protein L13| Length = 142 Score = 30.0 bits (66), Expect = 5.3 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 12/109 (11%) Frame = +2 Query: 92 VDARHHMLGRLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKMKYLR 235 VDA + +LGR AS ++ L G ++V+ +I ++G K+ Y Sbjct: 18 VDATNKILGRFASAISIRLRGKHKIEYTPHLDTGDYIIVLNASKILVTGQKKINKVYYHH 77 Query: 236 FLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAY 382 + I + PAK++ ++GM+P K + G + +LK + Sbjct: 78 TGYIGGIKQLRFEEIMLKNPAKVIEIAVKGMLP-KGSLGRSMFKKLKVF 125
>PO3F1_HUMAN (Q03052) POU domain, class 3, transcription factor 1| (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP) Length = 448 Score = 29.6 bits (65), Expect = 6.9 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Frame = +1 Query: 349 GRGRACQAQGVRGC-AAAVRQDQAHGHSRRAQGSEAAAWAQVLPPGPALQGG 501 G GRA G G A V Q AH + AQGS A + P P GG Sbjct: 96 GTGRADDGGGGGGFHARLVHQGAAHAGAAWAQGSTAHHLGPAMSPSPGASGG 147
>MADCA_MOUSE (Q61826) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (mMAdCAM-1) Length = 405 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = +1 Query: 409 DQAHGHSRRAQGSEAAAWAQVLPPGPALQG 498 D A H R A A AW VLPPGP ++G Sbjct: 311 DLATYHKREAG---AQAWLSVLPPGPMVEG 337
>CAPG_HUMAN (P40121) Macrophage capping protein (Actin-regulatory protein| CAP-G) Length = 348 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +1 Query: 349 GRGRACQAQGVRGCAAAVRQDQAHGHSRR---AQGSEAAAWAQVLPPGPALQGGRME 510 G+ + R A A+R + G ++ G E A QVL P PAL+ G E Sbjct: 180 GKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKPALKEGNPE 236
>CAPG_MOUSE (P24452) Macrophage capping protein (Myc basic motif homolog 1)| (Actin-capping protein GCAP39) Length = 352 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +1 Query: 349 GRGRACQAQGVRGCAAAVRQDQAHGHSRR---AQGSEAAAWAQVLPPGPALQGGRME 510 G+ + R A A+R + G ++ G E A QVL P PAL+ G E Sbjct: 182 GKSNILERNKARDLALAIRDSERQGKAQVEIITDGEEPAEMIQVLGPKPALKEGNPE 238
>DEND_RAT (P50617) Dendrin| Length = 653 Score = 29.3 bits (64), Expect = 9.0 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = +1 Query: 385 GCAAAVRQDQAHGHSRRAQGSEAAAWAQVLPPGP---ALQGGRMELRRH 522 GCA +V+ +A G RRA G WA+ PGP AL+ +RRH Sbjct: 524 GCAGSVKGPEAAGVPRRAGG----GWART--PGPYAGALREAVSRIRRH 566 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.133 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,669,390 Number of Sequences: 219361 Number of extensions: 1451712 Number of successful extensions: 5780 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 5353 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5724 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
