ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags20e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473145.1| Oryza sativa (japonica cultivar-group), predic... 141 3e-30
2dbj|AK073609.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 3e-30
3dbj|AK067002.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 3e-30
4gb|AY106405.1| Zea mays PCO131557 mRNA sequence 105 1e-19
5emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4,... 86 1e-13
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
7emb|AL591475.9| Human DNA sequence from clone RP11-314C16 on chr... 48 0.030
8gb|AC117523.2| Homo sapiens chromosome 5 clone RP11-1084O22, com... 42 1.8
9gb|AC094096.2| Homo sapiens chromosome 5 clone RP11-11P11, compl... 42 1.8
10gb|AE004556.1| Pseudomonas aeruginosa PAO1, section 117 of 529 o... 42 1.8
11gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosom... 40 7.3
12gb|U97407.2| Caenorhabditis elegans cosmid C34G6, complete sequence 40 7.3
13gb|AC024213.1| Caenorhabditis elegans cosmid Y76G2B, complete se... 40 7.3
14gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome... 40 7.3
15emb|BX548040.19| Zebrafish DNA sequence from clone CH211-190L11 ... 40 7.3
16emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g... 40 7.3
17ref|XM_679252.1| PREDICTED: Danio rerio similar to Cadherin EGF ... 40 7.3
18ref|NM_059310.2| Caenorhabditis elegans C34G6.1 (C34G6.1) mRNA, ... 40 7.3
19dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
20gb|AC006824.1|AC006824 Caenorhabditis elegans clone Y76G2B, comp... 40 7.3
21dbj|AK101888.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
22gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
23emb|BX936386.9| Zebrafish DNA sequence from clone CH211-232P21 i... 40 7.3
24gb|AC092891.5| Homo sapiens 12 BAC RP11-495C19 (Roswell Park Can... 40 7.3 
>ref|XM_473145.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2193

 Score =  141 bits (71), Expect = 3e-30
 Identities = 110/123 (89%)
 Strand = Plus / Plus

                                                                        
Query: 121  acagctggaggctgatgaattgttggctcggcaacttcaggagcagctttacaatgaaac 180
            |||| ||||| ||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 1626 acagttggagtctgatgagttattggctcgccaacttcaggagcagctttacaatgaaac 1685

                                                                        
Query: 181  acctcgtgttgctcctcgagaagagattgatgcgatcgtagcaatgtcacttcaacacga 240
             |||| ||||| |||   ||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 1686 tcctcatgttgttcccacagaagagattgatgcgatcatagcaatgtcacttcaacatga 1745

               
Query: 241  aga 243
            |||
Sbjct: 1746 aga 1748



 Score =  125 bits (63), Expect = 2e-25
 Identities = 93/103 (90%)
 Strand = Plus / Plus

                                                                        
Query: 436  tgctgcgcatattcaacctaatattgatttaaatgattatgatgcgctacttgcgctaga 495
            |||||| ||||||||||||||||||||| |||||||||||||||| || |||||  ||||
Sbjct: 1905 tgctgcacatattcaacctaatattgatctaaatgattatgatgcactgcttgcattaga 1964

                                                       
Query: 496  tgaaaataaccaccagcacactggtgcttcggaaagtcagatc 538
            ||||||||||||||||||  |||||||||| ||||| ||||||
Sbjct: 1965 tgaaaataaccaccagcatgctggtgcttcagaaagccagatc 2007



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 27   ctgtaatagatattgatgacacatcttcccctgaagttagatctagtttgag 78
            ||||| ||||||||||||||| ||  || |||||||| ||  ||||||||||
Sbjct: 1526 ctgtagtagatattgatgacatatgctctcctgaagtaaggcctagtttgag 1577
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>dbj|AK073609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048J15, full
            insert sequence
          Length = 2753

 Score =  141 bits (71), Expect = 3e-30
 Identities = 110/123 (89%)
 Strand = Plus / Plus

                                                                        
Query: 121  acagctggaggctgatgaattgttggctcggcaacttcaggagcagctttacaatgaaac 180
            |||| ||||| ||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 1927 acagttggagtctgatgagttattggctcgccaacttcaggagcagctttacaatgaaac 1986

                                                                        
Query: 181  acctcgtgttgctcctcgagaagagattgatgcgatcgtagcaatgtcacttcaacacga 240
             |||| ||||| |||   ||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 1987 tcctcatgttgttcccacagaagagattgatgcgatcatagcaatgtcacttcaacatga 2046

               
Query: 241  aga 243
            |||
Sbjct: 2047 aga 2049



 Score =  125 bits (63), Expect = 2e-25
 Identities = 93/103 (90%)
 Strand = Plus / Plus

                                                                        
Query: 436  tgctgcgcatattcaacctaatattgatttaaatgattatgatgcgctacttgcgctaga 495
            |||||| ||||||||||||||||||||| |||||||||||||||| || |||||  ||||
Sbjct: 2206 tgctgcacatattcaacctaatattgatctaaatgattatgatgcactgcttgcattaga 2265

                                                       
Query: 496  tgaaaataaccaccagcacactggtgcttcggaaagtcagatc 538
            ||||||||||||||||||  |||||||||| ||||| ||||||
Sbjct: 2266 tgaaaataaccaccagcatgctggtgcttcagaaagccagatc 2308



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 27   ctgtaatagatattgatgacacatcttcccctgaagttagatctagtttgag 78
            ||||| ||||||||||||||| ||  || |||||||| ||  ||||||||||
Sbjct: 1827 ctgtagtagatattgatgacatatgctctcctgaagtaaggcctagtttgag 1878
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>dbj|AK067002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091B14, full
            insert sequence
          Length = 3674

 Score =  141 bits (71), Expect = 3e-30
 Identities = 110/123 (89%)
 Strand = Plus / Plus

                                                                        
Query: 121  acagctggaggctgatgaattgttggctcggcaacttcaggagcagctttacaatgaaac 180
            |||| ||||| ||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 2862 acagttggagtctgatgagttattggctcgccaacttcaggagcagctttacaatgaaac 2921

                                                                        
Query: 181  acctcgtgttgctcctcgagaagagattgatgcgatcgtagcaatgtcacttcaacacga 240
             |||| ||||| |||   ||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 2922 tcctcatgttgttcccacagaagagattgatgcgatcatagcaatgtcacttcaacatga 2981

               
Query: 241  aga 243
            |||
Sbjct: 2982 aga 2984



 Score =  125 bits (63), Expect = 2e-25
 Identities = 93/103 (90%)
 Strand = Plus / Plus

                                                                        
Query: 436  tgctgcgcatattcaacctaatattgatttaaatgattatgatgcgctacttgcgctaga 495
            |||||| ||||||||||||||||||||| |||||||||||||||| || |||||  ||||
Sbjct: 3127 tgctgcacatattcaacctaatattgatctaaatgattatgatgcactgcttgcattaga 3186

                                                       
Query: 496  tgaaaataaccaccagcacactggtgcttcggaaagtcagatc 538
            ||||||||||||||||||  |||||||||| ||||| ||||||
Sbjct: 3187 tgaaaataaccaccagcatgctggtgcttcagaaagccagatc 3229



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 27   ctgtaatagatattgatgacacatcttcccctgaagttagatctagtttgag 78
            ||||| ||||||||||||||| ||  || |||||||| ||  ||||||||||
Sbjct: 2762 ctgtagtagatattgatgacatatgctctcctgaagtaaggcctagtttgag 2813
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>gb|AY106405.1| Zea mays PCO131557 mRNA sequence
          Length = 797

 Score =  105 bits (53), Expect = 1e-19
 Identities = 83/93 (89%)
 Strand = Plus / Plus

                                                                       
Query: 446 attcaacctaatattgatttaaatgattatgatgcgctacttgcgctagatgaaaataac 505
           |||||||| || ||||| |||||||| |||||||| || ||||| || ||||||||||||
Sbjct: 312 attcaaccaaacattgacttaaatgactatgatgcactgcttgctctggatgaaaataac 371

                                            
Query: 506 caccagcacactggtgcttcggaaagtcagatc 538
           |||||||||||||||||||| ||||| ||||||
Sbjct: 372 caccagcacactggtgcttcagaaagccagatc 404



 Score =  105 bits (53), Expect = 1e-19
 Identities = 92/105 (87%)
 Strand = Plus / Plus

                                                                       
Query: 143 ttggctcggcaacttcaggagcagctttacaatgaaacacctcgtgttgctcctcgagaa 202
           |||||||| ||||| ||||||||||| ||||||||| |  ||||| |||| ||   ||||
Sbjct: 9   ttggctcgccaactccaggagcagctctacaatgaatctgctcgttttgccccaacagaa 68

                                                        
Query: 203 gagattgatgcgatcgtagcaatgtcacttcaacacgaagaagat 247
           ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 69  gagattgatgcaatcgtagcaatgtcacttcaacatgaagaagat 113
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>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
             complete sequence
          Length = 158601

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                         
Query: 121   acagctggaggctgatgaattgttggctcggcaacttcaggagcagctttacaatgaaac 180
             |||| ||||| ||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 35791 acagttggagtctgatgagttattggctcgccaacttcaggagcagctttacaatgaaac 35732

                        
Query: 181   acctcgtgttg 191
              |||| |||||
Sbjct: 35731 tcctcatgttg 35721



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                         
Query: 466   aaatgattatgatgcgctacttgcgctagatgaaaataaccaccagcacactggtgcttc 525
             ||||||||||||||| || |||||  ||||||||||||||||||||||  ||||||||||
Sbjct: 34063 aaatgattatgatgcactgcttgcattagatgaaaataaccaccagcatgctggtgcttc 34004

                          
Query: 526   ggaaagtcagatc 538
              ||||| ||||||
Sbjct: 34003 agaaagccagatc 33991



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 204   agattgatgcgatcgtagcaatgtcacttcaacacgaaga 243
             |||||||||||||| ||||||||||||||||||| |||||
Sbjct: 35628 agattgatgcgatcatagcaatgtcacttcaacatgaaga 35589



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 436   tgctgcgcatattcaacctaatattgat 463
             |||||| |||||||||||||||||||||
Sbjct: 34380 tgctgcacatattcaacctaatattgat 34353



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                 
Query: 27    ctgtaatagatattgatgacacatcttcccctgaagttagatctagtttgag 78
             ||||| ||||||||||||||| ||  || |||||||| ||  ||||||||||
Sbjct: 35891 ctgtagtagatattgatgacatatgctctcctgaagtaaggcctagtttgag 35840
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                            
Query: 121      acagctggaggctgatgaattgttggctcggcaacttcaggagcagctttacaatgaaac 180
                |||| ||||| ||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 25549594 acagttggagtctgatgagttattggctcgccaacttcaggagcagctttacaatgaaac 25549535

                           
Query: 181      acctcgtgttg 191
                 |||| |||||
Sbjct: 25549534 tcctcatgttg 25549524



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                            
Query: 466      aaatgattatgatgcgctacttgcgctagatgaaaataaccaccagcacactggtgcttc 525
                ||||||||||||||| || |||||  ||||||||||||||||||||||  ||||||||||
Sbjct: 25547866 aaatgattatgatgcactgcttgcattagatgaaaataaccaccagcatgctggtgcttc 25547807

                             
Query: 526      ggaaagtcagatc 538
                 ||||| ||||||
Sbjct: 25547806 agaaagccagatc 25547794



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 204      agattgatgcgatcgtagcaatgtcacttcaacacgaaga 243
                |||||||||||||| ||||||||||||||||||| |||||
Sbjct: 25549431 agattgatgcgatcatagcaatgtcacttcaacatgaaga 25549392



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 436      tgctgcgcatattcaacctaatattgat 463
                |||||| |||||||||||||||||||||
Sbjct: 25548183 tgctgcacatattcaacctaatattgat 25548156



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                    
Query: 27       ctgtaatagatattgatgacacatcttcccctgaagttagatctagtttgag 78
                ||||| ||||||||||||||| ||  || |||||||| ||  ||||||||||
Sbjct: 25549694 ctgtagtagatattgatgacatatgctctcctgaagtaaggcctagtttgag 25549643
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>emb|AL591475.9| Human DNA sequence from clone RP11-314C16 on chromosome 6 Contains a
             novel gene and a CpG island, complete sequence
          Length = 48654

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 35    gatattgatgacacatcttcccct 58
             ||||||||||||||||||||||||
Sbjct: 46611 gatattgatgacacatcttcccct 46588
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>gb|AC117523.2| Homo sapiens chromosome 5 clone RP11-1084O22, complete sequence
          Length = 124957

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 451   acctaatattgatttaaatgattat 475
             |||||||||||||||| ||||||||
Sbjct: 31755 acctaatattgatttacatgattat 31779
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>gb|AC094096.2| Homo sapiens chromosome 5 clone RP11-11P11, complete sequence
          Length = 156194

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 451   acctaatattgatttaaatgattat 475
             |||||||||||||||| ||||||||
Sbjct: 70306 acctaatattgatttacatgattat 70330
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>gb|AE004556.1| Pseudomonas aeruginosa PAO1, section 117 of 529 of the complete genome
          Length = 11513

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 236   cacgaagaagatgcagaacgg 256
             |||||||||||||||||||||
Sbjct: 10666 cacgaagaagatgcagaacgg 10646
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>gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0059H21 map R3342S, complete sequence
          Length = 133790

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   ttgatgacacatcttcccct 58
            ||||||||||||||||||||
Sbjct: 3690 ttgatgacacatcttcccct 3671
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>gb|U97407.2| Caenorhabditis elegans cosmid C34G6, complete sequence
          Length = 47858

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    ttctgtaatagatattgatgacac 48
             |||||||||| |||||||||||||
Sbjct: 41410 ttctgtaataaatattgatgacac 41433



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    ttctgtaatagatattgatgacac 48
             |||||||||| |||||||||||||
Sbjct: 37018 ttctgtaataaatattgatgacac 36995
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>gb|AC024213.1| Caenorhabditis elegans cosmid Y76G2B, complete sequence
          Length = 28779

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 25   ttctgtaatagatattgatgacac 48
            |||||||||| |||||||||||||
Sbjct: 4811 ttctgtaataaatattgatgacac 4834



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 25  ttctgtaatagatattgatgacac 48
           |||||||||| |||||||||||||
Sbjct: 419 ttctgtaataaatattgatgacac 396
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>gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome 10, complete sequence
          Length = 226256

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   aactttgggtttgaggtctt 419
             ||||||||||||||||||||
Sbjct: 29022 aactttgggtttgaggtctt 29003
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>emb|BX548040.19| Zebrafish DNA sequence from clone CH211-190L11 in linkage group 12,
             complete sequence
          Length = 147855

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   tgatttaaatgattatgatg 479
             ||||||||||||||||||||
Sbjct: 99340 tgatttaaatgattatgatg 99359
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>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 456     atattgatttaaatgattat 475
               ||||||||||||||||||||
Sbjct: 1171206 atattgatttaaatgattat 1171187
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>ref|XM_679252.1| PREDICTED: Danio rerio similar to Cadherin EGF LAG seven-pass G-type
            receptor 1 precursor (LOC556436), mRNA
          Length = 3195

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 153  aacttcaggagcagctttac 172
            ||||||||||||||||||||
Sbjct: 995  aacttcaggagcagctttac 1014
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>ref|NM_059310.2| Caenorhabditis elegans C34G6.1 (C34G6.1) mRNA, complete cds
          Length = 5307

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 25  ttctgtaatagatattgatgacac 48
           |||||||||| |||||||||||||
Sbjct: 179 ttctgtaataaatattgatgacac 156
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 39       ttgatgacacatcttcccct 58
                ||||||||||||||||||||
Sbjct: 27841982 ttgatgacacatcttcccct 27842001
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>gb|AC006824.1|AC006824 Caenorhabditis elegans clone Y76G2B, complete sequence
          Length = 28779

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 25   ttctgtaatagatattgatgacac 48
            |||||||||| |||||||||||||
Sbjct: 4811 ttctgtaataaatattgatgacac 4834



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 25  ttctgtaatagatattgatgacac 48
           |||||||||| |||||||||||||
Sbjct: 419 ttctgtaataaatattgatgacac 396
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>dbj|AK101888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M12, full
            insert sequence
          Length = 3586

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   ttgatgacacatcttcccct 58
            ||||||||||||||||||||
Sbjct: 1491 ttgatgacacatcttcccct 1472
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 39       ttgatgacacatcttcccct 58
                ||||||||||||||||||||
Sbjct: 27865970 ttgatgacacatcttcccct 27865989
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>emb|BX936386.9| Zebrafish DNA sequence from clone CH211-232P21 in linkage group 3,
             complete sequence
          Length = 158520

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   taatattgatttaaatgatt 473
             ||||||||||||||||||||
Sbjct: 40398 taatattgatttaaatgatt 40379
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>gb|AC092891.5| Homo sapiens 12 BAC RP11-495C19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 109440

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 452    cctaatattgatttaaatgattat 475
              |||||||||||| |||||||||||
Sbjct: 104249 cctaatattgatataaatgattat 104272


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,990,422
Number of Sequences: 3902068
Number of extensions: 3990422
Number of successful extensions: 82735
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82627
Number of HSP's gapped (non-prelim): 107
length of query: 538
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 515
effective length of database: 17,143,297,704
effective search space: 8828798317560
effective search space used: 8828798317560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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