>XAB1_HUMAN (Q9HCN4) XPA-binding protein 1|
          Length = 374

 Score =  181 bits (459), Expect = 1e-45
 Identities = 87/166 (52%), Positives = 106/166 (63%)
 Frame = +2

Query: 11  LKSEQTSWXYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTPRSTNPVTFMS 190
           ++  Q    YVL+DTPGQIE+FTWSASG IITEA AS+FPTVV YV+DT RSTNPVTFMS
Sbjct: 109 IEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPVTFMS 168

Query: 191 NMMYACSILYKTRLPLVLTFNKVDVAKHEFALEWMQDFEAFQTAXXXXXXXXXXXXXXXX 370
           NM+YACSILYKT+LP ++  NK D+  H FA+EWMQDFEAFQ A                
Sbjct: 169 NMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMS 228

Query: 371 XXXDEFYNNLRXXXXXXXXXXXXDAFFEAIEASANEYMETYRADLD 508
              DEFY++LR            D  F  + ++A EY   YR + +
Sbjct: 229 LVLDEFYSSLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYE 274

>XAB1_MOUSE (Q8VCE2) XPA-binding protein 1|
          Length = 372

 Score =  181 bits (458), Expect = 2e-45
 Identities = 86/166 (51%), Positives = 107/166 (64%)
 Frame = +2

Query: 11  LKSEQTSWXYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTPRSTNPVTFMS 190
           ++  Q ++ YVL+DTPGQIE+FTWSASG IITEA AS+FPTVV YV+DT RSTNPVTFMS
Sbjct: 109 IEKAQNTFRYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPVTFMS 168

Query: 191 NMMYACSILYKTRLPLVLTFNKVDVAKHEFALEWMQDFEAFQTAXXXXXXXXXXXXXXXX 370
           NM+YACSILYKT+LP ++  NK D+  H FA+EWMQDFEAFQ A                
Sbjct: 169 NMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMS 228

Query: 371 XXXDEFYNNLRXXXXXXXXXXXXDAFFEAIEASANEYMETYRADLD 508
              DEFY++LR            D     + ++A EY   YR + +
Sbjct: 229 LVLDEFYSSLRVVGVSAVVGTGFDELCTQVTSAAEEYEREYRPEYE 274

>YJ42_YEAST (P47122) Hypothetical 43.2 kDa protein in HAM1-PEM2 intergenic|
           region
          Length = 385

 Score =  160 bits (405), Expect = 3e-39
 Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 10/175 (5%)
 Frame = +2

Query: 8   LLKSEQTSWXYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTPRSTNPVTFM 187
           L++ ++  +   ++DTPGQIE F WSASGAIITE+FAS+FPTV+AY+VDTPR+++P TFM
Sbjct: 92  LVEQKKDKFQNCIIDTPGQIECFVWSASGAIITESFASSFPTVIAYIVDTPRNSSPTTFM 151

Query: 188 SNMMYACSILYKTRLPLVLTFNKVDVAKHEFALEWMQDFEAFQTA----------XXXXX 337
           SNM+YACSILYKT+LP+++ FNK DV K +FA EWM DFE+FQ A               
Sbjct: 152 SNMLYACSILYKTKLPMIVVFNKTDVCKADFAKEWMTDFESFQAAIKEDQDLNGDNGLGS 211

Query: 338 XXXXXXXXXXXXXXDEFYNNLRXXXXXXXXXXXXDAFFEAIEASANEYMETYRAD 502
                         +EFY+ L             D F + ++   +EY + Y+ +
Sbjct: 212 GYMSSLVNSMSLMLEEFYSQLDVVGVSSFTGDGFDEFMQCVDKKVDEYDQYYKQE 266

>GOP2_CAEEL (P46577) Gro-1 operon protein 2|
          Length = 355

 Score =  150 bits (378), Expect = 4e-36
 Identities = 74/163 (45%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
 Frame = +2

Query: 8   LLKSEQTSWXYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTPRSTNPVTFM 187
           L+    + +   L+DTPGQIE FTWSASG+IIT++ AS+ PTVV Y+VD+ R+TNP TFM
Sbjct: 119 LINKRSSDFSVCLLDTPGQIEAFTWSASGSIITDSLASSHPTVVMYIVDSARATNPTTFM 178

Query: 188 SNMMYACSILYKTRLPLVLTFNKVDVAKHEFALEWMQDFEAFQTA-XXXXXXXXXXXXXX 364
           SNM+YACSILY+T+LP ++ FNK D+ K  FAL+WMQDFE F  A               
Sbjct: 179 SNMLYACSILYRTKLPFIVVFNKADIVKPTFALKWMQDFERFDEALEDARSSYMNDLSRS 238

Query: 365 XXXXXDEFYNNLRXXXXXXXXXXXXDAFFEAIEASANEYMETY 493
                DEFY  L+            +    AI+ S   Y + Y
Sbjct: 239 LSLVLDEFYCGLKTVCVSSATGEGFEDVMTAIDESVEAYKKEY 281

>AFF3_HUMAN (P51826) AF4/FMR2 family member 3 (LAF-4 protein) (Lymphoid nuclear|
            protein related to AF4)
          Length = 1227

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
 Frame = -1

Query: 468  LASIASKNA-STPVPDTADTPTERRLL*NSSSTRERLRVNEDEYDE-SESKAV*NASKSC 295
            L++ A+K++ S P   T+DTP E+ L     S R+R   NED+Y E  +S+   ++S   
Sbjct: 789  LSAPATKDSESAPPSHTSDTPAEKAL---PKSKRKRKCDNEDDYREIKKSQGEKDSSSRL 845

Query: 294  IHSRANSCLATSTLLNVST 238
              S +N+  A    +N+++
Sbjct: 846  ATSTSNTLSANHCNMNINS 864

>FUT2_ARATH (O81053) Probable fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2)|
          Length = 539

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 304 KVLHPLKSKLVLGYINLIKCQHQRQTSLVEDTARVHHVAHKGHR 173
           K+   L + L  GY  ++K  +    ++  D   +H  +H+GH+
Sbjct: 387 KLKSVLVTSLTTGYFEILKTMYWENPTVTRDVIGIHQPSHEGHQ 430

>UREA_CRYNV (O13465) Urease (EC 3.5.1.5) (Urea amidohydrolase)|
          Length = 832

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 44  LVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTPRSTNPVTFMSNMMYACSILYK 223
           L+ T G++++     S  ++TEA AS   TV+         +N  T  S+  Y  +++  
Sbjct: 390 LITTAGRLDVHVHYISPQLMTEALASGITTVIGGGTGPADGSNATTCTSSSFYMQNMIKA 449

Query: 224 T-RLPLVLTF 250
           T  +PL   F
Sbjct: 450 TDTIPLNFGF 459


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,660,065
Number of Sequences: 219361
Number of extensions: 1331164
Number of successful extensions: 4113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4112
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)