ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags20d18 |
|---|---|
| Clone Library Name | barley_pub |
>DCK1_FOWPV (P21974) Probable deoxycytidine kinase FPV059 (EC 2.7.1.74) (dCK)| Length = 219 Score = 36.2 bits (82), Expect = 0.044 Identities = 27/98 (27%), Positives = 37/98 (37%) Frame = +3 Query: 36 VSLDYLQGLHEKHESWLFPXXXXXXXXXXXXQLPTHMDGSLPPGIRDRVFYLEGDHMHSS 215 +S+DYL+ LHEKHE WL + Sbjct: 165 ISIDYLKTLHEKHELWL-----------------------------------------TQ 183 Query: 216 IQKVPALVLDCEPDIDFNRDIQAKRKYAQQVAEFFEFV 329 +KVP L++D E D F D AK+K +V EF + Sbjct: 184 CKKVPVLIIDGEEDFIF--DPCAKKKLINEVTEFINSI 219
>DCK_RAT (P48769) Deoxycytidine kinase (EC 2.7.1.74) (dCK)| Length = 260 Score = 35.4 bits (80), Expect = 0.075 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = +3 Query: 24 EEGGVSLDYLQGLHEKHESWL 86 EE G+ L+YL+ LH KHESWL Sbjct: 196 EEQGIPLEYLEKLHYKHESWL 216
>DCK_MOUSE (P43346) Deoxycytidine kinase (EC 2.7.1.74) (dCK)| Length = 260 Score = 35.4 bits (80), Expect = 0.075 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = +3 Query: 24 EEGGVSLDYLQGLHEKHESWL 86 EE G+ L+YL+ LH KHESWL Sbjct: 196 EEQGIPLEYLEKLHYKHESWL 216
>DCK_HUMAN (P27707) Deoxycytidine kinase (EC 2.7.1.74) (dCK)| Length = 260 Score = 35.4 bits (80), Expect = 0.075 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = +3 Query: 24 EEGGVSLDYLQGLHEKHESWL 86 EE G+ L+YL+ LH KHESWL Sbjct: 196 EEQGIPLEYLEKLHYKHESWL 216
>KITH_ICHV1 (P28855) Thymidine kinase (EC 2.7.1.21)| Length = 228 Score = 33.5 bits (75), Expect = 0.29 Identities = 13/20 (65%), Positives = 17/20 (85%) Frame = +3 Query: 27 EGGVSLDYLQGLHEKHESWL 86 E GV LDYL+ LHE++E+WL Sbjct: 166 EAGVGLDYLRLLHERYEAWL 185
>DCK2_FOWPV (Q9J579) Probable deoxycytidine kinase FPV151 (EC 2.7.1.74) (dCK)| Length = 235 Score = 33.1 bits (74), Expect = 0.37 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = +3 Query: 24 EEGGVSLDYLQGLHEKHESWL 86 EE V +DYL LH+KHE WL Sbjct: 171 EENTVKIDYLNLLHDKHEKWL 191
>ACADM_CAEEL (Q22347) Probable medium-chain specific acyl-CoA dehydrogenase,| mitochondrial precursor (EC 1.3.99.3) (MCAD) Length = 417 Score = 33.1 bits (74), Expect = 0.37 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = +1 Query: 157 CLQEYGIVSFTWKEITCILASKR---FLLWSWIVNLTLISTETYKPNENMPSKLRSSLNS 327 CL E + K ++A+ + F+L VNL L TYK ++ +K+RSS N+ Sbjct: 285 CLDESAKYALERKAFGTVIANHQAVQFMLADMAVNLELARLITYKSANDVDNKVRSSYNA 344 Query: 328 *IAK 339 IAK Sbjct: 345 SIAK 348
>TTLL2_HUMAN (Q9BWV7) Tubulin--tyrosine ligase-like protein 2 (Testis-specific| protein NYD-TSPG) Length = 592 Score = 32.0 bits (71), Expect = 0.83 Identities = 20/71 (28%), Positives = 31/71 (43%) Frame = +3 Query: 228 PALVLDCEPDIDFNRDIQAKRKYAQQVAEFFEFVNSKKEAPSEQTSTEKDRMNPKIMFPN 407 PAL LDC + D+ KRK + + ++N + E ++ N + Sbjct: 391 PALTLDC------STDVLVKRKLVHDIIDLI-YLNGLRNEGGEASNATHGNSNIDAAKSD 443 Query: 408 RGGLWVPDGVP 440 RGGL PD +P Sbjct: 444 RGGLDAPDCLP 454
>DNK_DROME (Q9XZT6) Deoxynucleoside kinase (EC 2.7.1.145) (Deoxyribonucleoside| kinase) (Dm-dNK) (Multispecific deoxynucleoside kinase) Length = 250 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/21 (66%), Positives = 14/21 (66%) Frame = +3 Query: 24 EEGGVSLDYLQGLHEKHESWL 86 EE V L YLQ LHE HE WL Sbjct: 171 EESCVPLKYLQELHELHEDWL 191
>DGUOK_MOUSE (Q9QX60) Deoxyguanosine kinase, mitochondrial precursor (EC| 2.7.1.113) (dGK) Length = 277 Score = 31.6 bits (70), Expect = 1.1 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +3 Query: 24 EEGGVSLDYLQGLHEKHESW 83 EE G+ L YLQ LH +HE W Sbjct: 210 EEKGIELAYLQQLHSQHEDW 229
>DGUOK_HUMAN (Q16854) Deoxyguanosine kinase, mitochondrial precursor (EC| 2.7.1.113) (dGK) Length = 277 Score = 31.6 bits (70), Expect = 1.1 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +3 Query: 24 EEGGVSLDYLQGLHEKHESWL 86 EE G+ L YL+ LH +HE+WL Sbjct: 210 EEKGIELAYLEQLHGQHEAWL 230
>RL3_MYCPN (P75580) 50S ribosomal protein L3| Length = 287 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = +3 Query: 219 QKVPALVLDCEPDIDFNRDIQAKRKYAQQVAEFFEFVNSKKEAPSEQTSTEKDRMNP 389 +++P V+ CEP+ +AK KY+ + F+ V +KK +Q EK+ + P Sbjct: 22 ERLPITVIYCEPNQVAGVKTEAKDKYSATLLS-FDTVENKKLNKPQQGFFEKNNLKP 77
>NGL3_YEAST (Q03210) Probable RNA exonuclease NGL3 (EC 3.1.-.-)| Length = 505 Score = 29.3 bits (64), Expect = 5.4 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 165 GIRDRVFYLEGDHMHSSIQKVP 230 G+ D +FY+EGDH + QK P Sbjct: 425 GLLDYIFYIEGDHNQDTRQKEP 446
>CRCB_CLOPE (Q8XLL2) Protein crcB homolog| Length = 128 Score = 29.3 bits (64), Expect = 5.4 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Frame = -3 Query: 469 SRFIAEPAKGGTPSGTHKPPLLGNMILGFMRSFSV--LVCSDGASFLLFTNSKNSATCWA 296 S F A+ G P GT +LG +++GF+ FS+ + S L T T ++ Sbjct: 25 SIFAAKNFGGNFPYGTLIANILGALLIGFIMEFSMDSALISSNMKLFLTTGIMGGLTTFS 84 Query: 295 YFRLACMSLL 266 F +S+L Sbjct: 85 TFSYETISML 94
>KITM_HUMAN (O00142) Thymidine kinase 2, mitochondrial precursor (EC 2.7.1.21)| (Mt-TK) Length = 266 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = +3 Query: 24 EEGGVSLDYLQGLHEKHESWLFPXXXXXXXXXXXXQLPTHMDGSLPPGIRDRVFYLEGDH 203 EE + L+YL+ +H HE WL + GSL P + V +E DH Sbjct: 200 EEKVIPLEYLEAIHHLHEEWL-------------------IKGSLFP-MAAPVLVIEADH 239 Query: 204 MH 209 H Sbjct: 240 HH 241
>TRI74_HUMAN (Q86UV6) Tripartite motif protein 74 (Tripartite motif protein 50C)| Length = 250 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/76 (25%), Positives = 30/76 (39%) Frame = -3 Query: 289 RLACMSLLKSMSGSQSKTRAGTFWMLECM*SPSR*KTRSRIPGGKEPSICVGS*LTDNTP 110 ++ C + + GS S W++E + R+PG EP +CV P Sbjct: 50 KVRCPMCWQVVDGSSSLPNVSLAWVIEAL----------RLPGDPEPKVCV----HHRNP 95 Query: 109 LPPPFEGNSQLSCFSC 62 L E + +L C C Sbjct: 96 LSLFCEKDQELICGLC 111
>TRI73_HUMAN (Q86UV7) Tripartite motif protein 73 (Tripartite motif protein 50B)| Length = 250 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/76 (25%), Positives = 30/76 (39%) Frame = -3 Query: 289 RLACMSLLKSMSGSQSKTRAGTFWMLECM*SPSR*KTRSRIPGGKEPSICVGS*LTDNTP 110 ++ C + + GS S W++E + R+PG EP +CV P Sbjct: 50 KVRCPMCWQVVDGSSSLPNVSLAWVIEAL----------RLPGDPEPKVCV----HHRNP 95 Query: 109 LPPPFEGNSQLSCFSC 62 L E + +L C C Sbjct: 96 LSLFCEKDQELICGLC 111
>KITM_MACFA (Q9N0C5) Thymidine kinase 2, mitochondrial precursor (EC 2.7.1.21)| (Mt-TK) Length = 265 Score = 28.5 bits (62), Expect = 9.2 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 24 EEGGVSLDYLQGLHEKHESWL 86 EE + L+YL+ +H HE WL Sbjct: 200 EEKVIPLEYLEAIHHLHEEWL 220
>SYJ1_SCHPO (O43001) Synaptojanin homolog 1 (EC 3.1.3.36)| (Inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1076 Score = 28.5 bits (62), Expect = 9.2 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = -2 Query: 236 QSRNLLDARMHVISF-QVKDTIPYSWRQGAIHMRGQ 132 ++ +LD+ + +S+ QV+ +IP W Q + M GQ Sbjct: 269 ETETILDSSKYCVSYCQVRGSIPIFWEQEGVQMFGQ 304
>CAPS_DROME (Q9NHE5) Calcium-dependent secretion activator (dCAPS)| Length = 1436 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +1 Query: 217 SKRFLLWSWIVNLTLISTETYKPNENMPSKLRSSLNS 327 SK +L SW+ +I T + + PS+++ SLNS Sbjct: 278 SKETVLTSWMAKFDIILKGTGEEDSKRPSRMQQSLNS 314 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,589,820 Number of Sequences: 219361 Number of extensions: 1670317 Number of successful extensions: 4387 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4283 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4384 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
