>YB95_ARATH (Q8W487) Protein At2g39795, mitochondrial precursor|
          Length = 250

 Score = 93.2 bits (230), Expect = 6e-19
 Identities = 43/105 (40%), Positives = 67/105 (63%)
 Frame = +1

Query: 61  SSLAMKVIVSKGSGPNLEFTCTAFREEITIDDMMIAEKTEPDAEKFPFEGPEFTELPPNV 240
           SS+ + V V+K SG  LEF+C AF +EI ID + +    +   ++   EGP+F +L  N+
Sbjct: 145 SSIPLVVTVTKKSGLTLEFSCMAFPDEIAIDALSVKHPGDSLEDQLANEGPDFEDLDENL 204

Query: 241 QKGLFKFLEVRGVTLTTTNFMHDYMITKQTKEYVRWMTKLKGLVQ 375
           +K  +KFLE+RGV  +TTNF+H+YM  K  +EY  W+  +K  ++
Sbjct: 205 KKTFYKFLEIRGVKASTTNFLHEYMTRKVNREYFLWLKNVKEFME 249

>Y2979_ARATH (O22288) Hypothetical protein At2g39790, mitochondrial precursor|
          Length = 240

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 29/103 (28%), Positives = 52/103 (50%)
 Frame = +1

Query: 64  SLAMKVIVSKGSGPNLEFTCTAFREEITIDDMMIAEKTEPDAEKFPFEGPEFTELPPNVQ 243
           S  + V V K +G ++EFTC A+ + I + D+ + +      E    + P F  L  N++
Sbjct: 140 SFPLVVTVIKKNGVSIEFTCQAYADYIDLTDLTVHDYQYQMGET---DWPRFKNLDDNLK 196

Query: 244 KGLFKFLEVRGVTLTTTNFMHDYMITKQTKEYVRWMTKLKGLV 372
           K   ++L  R +    T  +H YM++K  +EY+ W+  +   V
Sbjct: 197 KAFHRYLATR-LDANITKLLHKYMVSKIKREYLLWLKNVNKFV 238

>MAM33_YEAST (P40513) Mitochondrial acidic protein MAM33, mitochondrial|
           precursor
          Length = 266

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 202 FEGPEFTELPPNVQKGLFKFLEVRGVTLTTTNFMHDYMITKQTKEYVRWMTKLK 363
           + GP F+ L   +Q+ L  +LE RGV     +F+  Y   K+  EY+ W+ K+K
Sbjct: 209 YHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMK 262

>PRIA_RHORU (P05445) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase|
           priA) (Replication factor Y)
          Length = 811

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 222 RASSQRAEGPVQVPGGTRCDADNHQLHARLHDH 320
           RA+ QRAEG   +PGG R      ++ A L DH
Sbjct: 142 RAAGQRAEGQGPLPGGARLSPGRQRVLAVLDDH 174

>ZW10_RAT (Q4V8C2) Centromere/kinetochore protein zw10 homolog|
          Length = 776

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
 Frame = -1

Query: 375 LDQTLELGHPPDVLLGLLGDHVIVHEVGGC----------QRHTSYLQELE---QALLHV 235
           LD  LE+G  P+++L  +   VI  ++  C            ++S LQ+ E   Q+    
Sbjct: 310 LDADLEIGKVPEIVLAEMLGEVIWEDLSDCLIRNCLVYSIPTNSSKLQQYEEIIQSTEEF 369

Query: 234 GRKLGEFRALKGEFLCIRFCFLCYHHVVNGDLLTKGCAGELKVWARSLGDYHLHSKATV 58
            + L E R LKG+   +    L Y   +N     K C  ++ V AR L    +H+   +
Sbjct: 370 EKSLKEMRFLKGDTTDL----LKYARNINSHFANKKCQ-DVIVAARHLMTSEIHNTVKI 423

>DYH5_MOUSE (Q8VHE6) Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy|
            chain 5) (Mdnah5)
          Length = 4621

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
 Frame = -1

Query: 282  RHTSYLQELEQALLHVGRKLGEFRALKGEF--------LCIRFCFLCYHHVVNGDLLTKG 127
            RH   +Q+L++A   +  K  E   ++ E+          +     C H +     L  G
Sbjct: 3433 RHILAMQDLQKAQAELDAKQAELDVVQAEYEQAMAEKQTLLEDADRCRHKMQTASTLISG 3492

Query: 126  CAGELKVWARSLGDYHLHSKATVFAALIFIVIXPWQHPHRQ 4
             AGE + W     ++   +K  V   L+      +  P  Q
Sbjct: 3493 LAGEKERWTEQSKEFAAQTKRLVGDVLLATAFLSYSGPFNQ 3533

>DYH5_HUMAN (Q8TE73) Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy|
            chain 5) (HL1)
          Length = 4624

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
 Frame = -1

Query: 282  RHTSYLQELEQALLHVGRKLGEFRALKGEF--------LCIRFCFLCYHHVVNGDLLTKG 127
            RH   +Q+L++A   +  K  E   ++ E+          +     C H +     L  G
Sbjct: 3436 RHLLAMQDLQKAQAELDDKQAELDVVQAEYEQAMTEKQTLLEDAERCRHKMQTASTLISG 3495

Query: 126  CAGELKVWARSLGDYHLHSKATVFAALIFIVIXPWQHPHRQ 4
             AGE + W     ++   +K  V   L+      +  P  Q
Sbjct: 3496 LAGEKERWTEQSQEFAAQTKRLVGDVLLATAFLSYSGPFNQ 3536

>PRTP_EBV (P25939) Probable processing and transport protein|
          Length = 789

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -1

Query: 354 GHPPDVLLGLLGDHVI----VHEVGGCQRHTSYLQELEQALLHVGRKLG 220
           GH  DV L L+ D  I    ++ V  C  HT  L+ LE+AL  +GR  G
Sbjct: 213 GHKVDVSLCLINDIEILMKRINSVFYCMSHTMGLESLERALDLLGRFRG 261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,773,754
Number of Sequences: 219361
Number of extensions: 1744287
Number of successful extensions: 4312
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4311
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)