ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags20d02 |
|---|---|
| Clone Library Name | barley_pub |
>RIB1_MOUSE (Q91YQ5) Dolichyl-diphosphooligosaccharide--protein| glycosyltransferase 67 kDa subunit precursor (EC 2.4.1.119) (Ribophorin I) (RPN-I) Length = 608 Score = 92.8 bits (229), Expect = 5e-19 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 4/168 (2%) Frame = +2 Query: 11 VDLTSHIVRVLTSLKVENAGSEPVSK----VLLAFPNIQSKNLAAIRAFGTEGKVKGLSS 178 VDL+SH+ +V + + + G S+ VL P ++S+ E + Sbjct: 41 VDLSSHLAKVTAEVVLVHPGGGSTSRASSFVLALEPELESRLAHLGVQIKGEDEEDNNLE 100 Query: 179 ILPIEVVEPSGVPPELTFFSALLNKPLEKGKILHLDVLTVFTHFLQPFPEEITQADSQLV 358 + ++ SG FF+ L L+ G + + V TV+TH L P+P +ITQ++ Q V Sbjct: 101 VRETKIKGKSG-----RFFTVKLPVALDPGSKISVVVETVYTHVLHPYPTQITQSEKQFV 155 Query: 359 VFQDSSHYLSPYPVKVQTLSIRLPGGRVESYTKYGNTKLVESELKYGP 502 VF+ + ++ SPYP K QT+ ++L VESYTK GN E L YGP Sbjct: 156 VFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPSRSEDVLDYGP 203
>RIB1_HUMAN (P04843) Dolichyl-diphosphooligosaccharide--protein| glycosyltransferase 67 kDa subunit precursor (EC 2.4.1.119) (Ribophorin I) (RPN-I) Length = 607 Score = 92.4 bits (228), Expect = 6e-19 Identities = 55/164 (33%), Positives = 85/164 (51%) Frame = +2 Query: 11 VDLTSHIVRVLTSLKVENAGSEPVSKVLLAFPNIQSKNLAAIRAFGTEGKVKGLSSILPI 190 VDL+SH+ +V + + + G S+ ++ + A + G + K + + Sbjct: 40 VDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDEEEN-NL 98 Query: 191 EVVEPSGVPPELTFFSALLNKPLEKGKILHLDVLTVFTHFLQPFPEEITQADSQLVVFQD 370 EV E FF+ L L+ G + + V TV+TH L P+P +ITQ++ Q VVF+ Sbjct: 99 EVRETKIKGKSGRFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEG 158 Query: 371 SSHYLSPYPVKVQTLSIRLPGGRVESYTKYGNTKLVESELKYGP 502 + ++ SPYP K QT+ ++L VESYTK GN E L YGP Sbjct: 159 NHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGP 202
>RIB1_RAT (P07153) Dolichyl-diphosphooligosaccharide--protein| glycosyltransferase 67 kDa subunit precursor (EC 2.4.1.119) (Ribophorin I) (RPN-I) Length = 605 Score = 92.0 bits (227), Expect = 8e-19 Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Frame = +2 Query: 11 VDLTSHIVRVLTSLKVENAGSEPVSK----VLLAFPNIQSKNL-AAIRAFGTEGKVKGLS 175 VDL+SH+ +V + + + G ++ VL P ++S+ ++ G + + L Sbjct: 38 VDLSSHLAKVTAEVVLAHPGGGSTARASSFVLALEPELESRLAHLGVQVKGEDEEDNNL- 96 Query: 176 SILPIEVVEPSGVPPELTFFSALLNKPLEKGKILHLDVLTVFTHFLQPFPEEITQADSQL 355 EV E FF+ L L+ G + + V TV+TH L P+P +ITQ++ Q Sbjct: 97 -----EVRETKMKGKSGRFFTVKLPVALDPGSKISIVVETVYTHVLHPYPTQITQSEKQF 151 Query: 356 VVFQDSSHYLSPYPVKVQTLSIRLPGGRVESYTKYGNTKLVESELKYGP 502 VVF+ + ++ SPYP K QT+ +RL VES+TK GN E L YGP Sbjct: 152 VVFEGNHYFYSPYPTKTQTMRVRLASRNVESHTKLGNPSRSEDILDYGP 200
>OSTA_SCHPO (Q10176) Putative dolichyl-diphosphooligosaccharide--protein| glycosyltransferase alpha subunit precursor (EC 2.4.1.119) (Oligosaccharyl transferase alpha subunit) Length = 450 Score = 48.1 bits (113), Expect = 1e-05 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 11/169 (6%) Frame = +2 Query: 11 VDLTSHIVRVLTSLKVENAGSEPVSKVLLAFPNIQSKNLAAIRAFGTEGKVKGLSSILPI 190 +DL S + LTSL + N G EP + +++ ++ E + KG + PI Sbjct: 31 IDLRSTYTKTLTSLIIVNEGDEPQNTYRYFQQTSPGESVLSLSVSIKEEEKKGTN---PI 87 Query: 191 EVVEPSGVPPELTFFSALLNKPLEKGKILHLDVLTVFTHFLQPFPEEITQADSQLVVFQD 370 +V + L P++ G+ L + ++P P + Q + Q +V+ Sbjct: 88 KVNN--------NVYDIPLQPPVKPGESRTLLIQAGLDGGVRPLPAAVDQDEEQYLVYLT 139 Query: 371 SSHYLSPYPVKVQTLSIRLPGGRVESYTKY-----------GNTKLVES 484 + + SPY +Q + LP ++++YT Y GNT + ES Sbjct: 140 TLYLDSPYTTDLQRTRLILPSAKIDTYTTYNIDGAELPNRVGNTLVYES 188
>RXT3_YEAST (Q07458) Transcriptional regulatory protein RXT3| Length = 294 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 4/25 (16%) Frame = -1 Query: 492 FSSDSTSFV----FPYFVYDSTLPP 430 F DSTS+ FPY +YD+TLPP Sbjct: 100 FDEDSTSYSDRHSFPYNLYDNTLPP 124
>MLRV_RAT (P08733) Myosin regulatory light chain 2, ventricular/cardiac| muscle isoform (MLC-2) (MLC-2v) Length = 165 Score = 29.6 bits (65), Expect = 4.8 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Frame = +2 Query: 2 EGKVDLTSHIVRVLTSLKVENAGSEPVSKVLLAFP-----NIQSKNLAAIRAFGTE 154 EGK L + VR + + + E E + ++ AFP N+ KNL I G E Sbjct: 108 EGKGSLKADYVREMLTTQAERFSKEEIDQMFAAFPPDVTGNLDYKNLVHIITHGEE 163
>MLRV_MOUSE (P51667) Myosin regulatory light chain 2, ventricular/cardiac| muscle isoform (MLC-2) (MLC-2v) Length = 165 Score = 29.6 bits (65), Expect = 4.8 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Frame = +2 Query: 2 EGKVDLTSHIVRVLTSLKVENAGSEPVSKVLLAFP-----NIQSKNLAAIRAFGTE 154 EGK L + VR + + + E E + ++ AFP N+ KNL I G E Sbjct: 108 EGKGSLKADYVREMLTTQAERFSKEEIDQMFAAFPPDVTGNLDYKNLVHIITHGEE 163
>URE1_SILPO (Q5LSQ2) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit) Length = 569 Score = 29.6 bits (65), Expect = 4.8 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 8/97 (8%) Frame = +2 Query: 134 IRAFGTEGKVKG----LSSILPIEVVEPSGVPPELTFFSALLNKPLEKGKILHLDVLTVF 301 I AF TEG G + I E V PS P F L + HLD+L V Sbjct: 270 IHAFHTEGAGGGHAPDIIKICGEEHVLPSSTNPTRPFTVNTLEE--------HLDMLMVC 321 Query: 302 THFLQPFPEEITQADSQL----VVFQDSSHYLSPYPV 400 H + PE++ A+S++ + +D H + + + Sbjct: 322 HHLDKSIPEDVAFAESRIRRETIAAEDILHDMGAFSI 358
>TOP1_PYRFU (O73954) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) [Contains: Endonuclease PI-PfuI (EC 3.1.-.-) (Pfu topA intein)] Length = 1060 Score = 29.3 bits (64), Expect = 6.3 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Frame = -3 Query: 379 VRAILKDNKLRIGLGDL--FWEWLEKVCKYSQDIQVKNLPLFQRF 251 +RA ++DNKL++ L DL F E L K + ++ +P+F F Sbjct: 591 IRAKIEDNKLKVHLEDLQRFRELLGKFSRRKLYVETSQVPVFTDF 635
>FAT1_COCHE (O42633) Fatty acid transporter protein| Length = 643 Score = 29.3 bits (64), Expect = 6.3 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +2 Query: 53 KVENAGSEPVSKVLLAFPNIQSKNLAAIRAFGTEGKVKGLS 175 K EN + V+ V+ FP I N+ + G +G+V+ L+ Sbjct: 507 KSENVSTNEVADVMGTFPQIAETNVYGVLVPGNDGRVRSLN 547
>URE1_RHOS4 (Q3J154) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit) Length = 568 Score = 29.3 bits (64), Expect = 6.3 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 8/97 (8%) Frame = +2 Query: 134 IRAFGTEGKVKG----LSSILPIEVVEPSGVPPELTFFSALLNKPLEKGKILHLDVLTVF 301 I AF TEG G + ++ V PS P + + + + + HLD+L V Sbjct: 270 IHAFHTEGAGGGHAPDIIKVVGAANVIPSSTNPTMPYTANTVEE--------HLDMLMVC 321 Query: 302 THFLQPFPEEITQADSQL----VVFQDSSHYLSPYPV 400 H + PE++ A+S++ + +D H + + V Sbjct: 322 HHLDRSIPEDVAFAESRIRKETIAAEDILHDMGAFSV 358
>Y583_MYCPN (P75197) Hypothetical protein MPN583 (D02_orf225L)| Length = 225 Score = 28.9 bits (63), Expect = 8.2 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 11/78 (14%) Frame = +2 Query: 221 ELTFFSALLNKPLEKGKILHLDVLTVFTHFLQPFPEEITQADSQLVVF--------QDSS 376 ELT F L+ P++K VF HF+QP + Q + L +F ++ Sbjct: 97 ELTLF---LDNPVDK---------KVFDHFIQPAIKTYEQLGNSLKLFAKPTLTELKNHR 144 Query: 377 HYLSPYPV---KVQTLSI 421 +YLS YP KV LS+ Sbjct: 145 YYLSGYPFLENKVNVLSV 162
>URE1_BACC1 (Q733J6) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit) Length = 570 Score = 28.9 bits (63), Expect = 8.2 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%) Frame = +2 Query: 134 IRAFGTEGKVKG----LSSILPIEVVEPSGVPPELTFFSALLNKPLEKGKILHLDVLTVF 301 I + TEG G + I + + PS P L + L++ HLD+L V Sbjct: 271 IHTYHTEGAGGGHAPDIIKIAALNNILPSSTNPTLPYTVNTLDE--------HLDMLMVC 322 Query: 302 THFLQPFPEEITQADSQL 355 H PE++ ADS++ Sbjct: 323 HHLKANIPEDVMFADSRI 340
>MLRV_HUMAN (P10916) Myosin regulatory light chain 2, ventricular/cardiac| muscle isoform (MLC-2) (MLC-2v) Length = 165 Score = 28.9 bits (63), Expect = 8.2 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Frame = +2 Query: 2 EGKVDLTSHIVRVLTSLKVENAGSEPVSKVLLAFP-----NIQSKNLAAIRAFGTE 154 EGK L + VR + + + E E V ++ AFP N+ KNL I G E Sbjct: 108 EGKGVLKADYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGEE 163
>NLE1_BOVIN (Q58D20) Notchless homolog 1| Length = 485 Score = 28.9 bits (63), Expect = 8.2 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = +2 Query: 341 ADSQLVVFQDSSHYLSPYPVKVQTLSIRLPGGRVESY 451 ADS+L+V S L + VK Q LS LPG E Y Sbjct: 424 ADSRLLVSGSSDSTLKVWDVKAQKLSTDLPGHADEVY 460
>ZCHC8_CHICK (Q5F3D1) Zinc finger CCHC domain-containing protein 8| Length = 613 Score = 28.9 bits (63), Expect = 8.2 Identities = 16/60 (26%), Positives = 29/60 (48%) Frame = +2 Query: 203 PSGVPPELTFFSALLNKPLEKGKILHLDVLTVFTHFLQPFPEEITQADSQLVVFQDSSHY 382 PSG+P E F ++ +P ++ VF H+L F +++ ++ Q SSH+ Sbjct: 272 PSGIPDEWQIFGSIPMQPSQQKD--------VFAHYLSNFHAPSSKSSNKRTAPQPSSHH 323 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,508,097 Number of Sequences: 219361 Number of extensions: 1434295 Number of successful extensions: 4321 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4237 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4318 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
