ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags20d01 |
|---|---|
| Clone Library Name | barley_pub |
>STS5_SCHPO (O74454) Protein sts5| Length = 1066 Score = 31.2 bits (69), Expect = 2.0 Identities = 33/116 (28%), Positives = 45/116 (38%) Frame = -2 Query: 490 TPLFSALPLGVADGGSLKHCGGKGVGGFQTRLLFIENLTFLPLLSPS*AGTLPLLPTSPP 311 T L A+ G G G+G F + N + + P G PL PT+ Sbjct: 67 TGLLPAVESSFVHGHRRSASAGVGMGNFSNQATIPSNSPAVSNMQPPTQGGQPLYPTNFF 126 Query: 310 EDSDDLSADFERFLFFATIAVTGVTGIPASAATFSNCXXRLDIEASSNVMASVSSP 143 S S+D F + V + S AT +N R A S+ +ASVSSP Sbjct: 127 TTSVSASSD----SFPNSPTVPSKFSLNPSVATSTNISPRR--HAKSHSVASVSSP 176
>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast| precursor Length = 387 Score = 31.2 bits (69), Expect = 2.0 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = +3 Query: 324 GSKGNVPAQDGDKSGKKVRFSMKSNLVWNPPTPLPPQCLRLPPSATPRGSALKSGVRPGP 503 G G++P D+ S S+ VW+ T + P LR PP+ P + L+ +P P Sbjct: 4 GLYGDLPPPTDDEKP-----SGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNKPKP 58 Query: 504 I 506 I Sbjct: 59 I 59
>EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear antigen 1)| (EBNA-1) Length = 641 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +3 Query: 429 PQCLRLPPSATPRGSALKSGVRPGPIKES 515 PQC P S P G A G +PGP++ES Sbjct: 529 PQCRLTPLSRLPFGMAPGPGPQPGPLRES 557
>TRPA_BACC1 (Q73BQ6) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 258 Score = 30.0 bits (66), Expect = 4.5 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = -2 Query: 442 LKHCGGKGVGGFQTR-LLFIENLTFLPLLSPS*AGTLPLLP-TSPPEDSDDLSADFERFL 269 +++C GV G L + E PLL + +PL+ TSP E + ++++ E F+ Sbjct: 112 IENCIEAGVDGIIVPDLPYEEQDIIAPLLRTANIALIPLVTVTSPIERIEKITSESEGFV 171 Query: 268 FFATIAVTGVTGI 230 + T+A GVTG+ Sbjct: 172 YAVTVA--GVTGV 182
>TAF1C_MOUSE (Q6PDZ2) TATA box-binding protein-associated factor, RNA polymerase| I, subunit C (TATA box-binding protein-associated factor 1C) (TBP-associated factor 1C) (TBP-associated factor RNA polymerase I 95 kDa) (TAFI95) Length = 836 Score = 30.0 bits (66), Expect = 4.5 Identities = 31/93 (33%), Positives = 36/93 (38%), Gaps = 10/93 (10%) Frame = -2 Query: 514 LSFIGPGRTPLFSALPLGVADGGSLKHC----------GGKGVGGFQTRLLFIENLTFLP 365 + F G R LF A PLG+ DG L G + L F +NL Sbjct: 1 MDFPGTLRPSLFKAGPLGMTDGPDLSFMCSWRDALTLPGSQPQNCKDPTLSFAKNL---- 56 Query: 364 LLSPS*AGTLPLLPTSPPEDSDDLSADFERFLF 266 L PS G LPLL P D D + FLF Sbjct: 57 LWEPSTPGPLPLL-MPPDPDPWDPGVTAQDFLF 88
>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (DNup214) Length = 1711 Score = 29.6 bits (65), Expect = 5.9 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = -2 Query: 262 ATIAVTGVTGIPASAATFSNCXXRLDIEASSNVMASVSSPICWSSDVAS 116 ++ VT T +P SA +FSN L ++ S S+P+ S A+ Sbjct: 1297 SSTTVTSSTAVPGSAFSFSNAFSTLSAGGAAAPTTSASAPLAAKSPTAT 1345
>ACK1_HUMAN (Q07912) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1) (Tyrosine| kinase non-receptor protein 2) Length = 1036 Score = 29.6 bits (65), Expect = 5.9 Identities = 16/30 (53%), Positives = 19/30 (63%) Frame = +3 Query: 414 PTPLPPQCLRLPPSATPRGSALKSGVRPGP 503 PTPLP L LPP +TP +A + VRP P Sbjct: 883 PTPLPVPLL-LPPPSTPAPAAPTATVRPMP 911
>STF1_RAT (P50569) Steroidogenic factor 1 (STF-1) (SF-1) (Adrenal 4-binding| protein) (Steroid hormone receptor Ad4BP) (Fushi tarazu factor homolog 1) Length = 462 Score = 29.6 bits (65), Expect = 5.9 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Frame = +3 Query: 411 PPTPLPPQCLRLPPSA-TPRGSALKSGVRPGPI 506 PP P PP LPPS P AL SG GP+ Sbjct: 129 PPPPPPPPDYMLPPSLHAPEPKALVSGPPSGPL 161
>STF1_MOUSE (P33242) Steroidogenic factor 1 (STF-1) (SF-1) (Adrenal 4-binding| protein) (Steroid hormone receptor Ad4BP) (Fushi tarazu factor homolog 1) (Embryonal LTR-binding protein) (ELP) (Embryonal long terminal repeat-binding protein) (Steroid hydroxy Length = 462 Score = 29.6 bits (65), Expect = 5.9 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Frame = +3 Query: 411 PPTPLPPQCLRLPPSA-TPRGSALKSGVRPGPI 506 PP P PP LPPS P AL SG GP+ Sbjct: 129 PPPPPPPPDYMLPPSLHAPEPKALVSGPPSGPL 161
>CATC_RAT (P80067) Dipeptidyl-peptidase 1 precursor (EC 3.4.14.1)| (Dipeptidyl-peptidase I) (DPP-I) (DPPI) (Cathepsin C) (Cathepsin J) (Dipeptidyl transferase) [Contains: Dipeptidyl-peptidase 1 exclusion domain chain (Dipeptidyl-peptidase I exclusion domai Length = 462 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 422 FTTTVLEAPTICYPKRECTKKWSSAWAYKGKLYAG 526 F T +AP C PK C + +SS + Y G Y G Sbjct: 321 FPYTATDAP--CKPKENCLRYYSSEYYYVGGFYGG 353
>EMR1_HUMAN (Q14246) EGF-like module-containing mucin-like hormone| receptor-like 1 precursor (Cell surface glycoprotein EMR1) (EMR1 hormone receptor) Length = 886 Score = 29.3 bits (64), Expect = 7.7 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Frame = -1 Query: 269 LLCHYCSN---WCHRHPCFCSNLLKLLXKIGHRSVIKCNGISVIA---HLLVL*CGIYTL 108 LLC N + H H C C L K L G G ++IA H L L C + L Sbjct: 625 LLCRSIRNHNTYLHLHLCVCLLLAKTLFLAGIHKTDNKTGCAIIAGFLHYLFLACFFWML 684 Query: 107 LTAI 96 + A+ Sbjct: 685 VEAV 688
>HD_RAT (P51111) Huntingtin (Huntington disease protein homolog) (HD| protein) Length = 3110 Score = 29.3 bits (64), Expect = 7.7 Identities = 16/41 (39%), Positives = 19/41 (46%) Frame = +3 Query: 411 PPTPLPPQCLRLPPSATPRGSALKSGVRPGPIKESSTQVKK 533 PP P PPQ PP P+G PGP +E + KK Sbjct: 25 PPPPPPPQ----PPQPPPQGQPPPPPPLPGPAEEPLHRPKK 61
>HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)| Length = 443 Score = 29.3 bits (64), Expect = 7.7 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = +3 Query: 411 PPTPLPPQCLRLPPSATPRGSALKSGVRPGPIKESSTQVKKAKAKA 548 PP P PPQ PP+ TP S V P P +S + AK+ Sbjct: 100 PPAPQPPQPPPQPPAPTPAAPPPPSSVSP-PQSANSNPTPASTAKS 144
>TACC2_MOUSE (Q9JJG0) Transforming acidic coiled-coil-containing protein 2| Length = 1035 Score = 29.3 bits (64), Expect = 7.7 Identities = 13/38 (34%), Positives = 16/38 (42%) Frame = +3 Query: 402 VWNPPTPLPPQCLRLPPSATPRGSALKSGVRPGPIKES 515 V +PP P P C+ PP P G V P + S Sbjct: 59 VIDPPAPEEPGCISEPPVVVPDGPRSSESVEGSPFRPS 96
>TRPA_BACCR (Q81GG4) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 258 Score = 29.3 bits (64), Expect = 7.7 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Frame = -2 Query: 442 LKHCGGKGVGGFQTR-LLFIENLTFLPLLSPS*AGTLPLLP-TSPPEDSDDLSADFERFL 269 +++C GV G L + E PLL +PL+ TSP E + ++++ E F+ Sbjct: 112 IENCIEAGVDGIIVPDLPYEEQNIIAPLLREVNIALIPLVTVTSPIERIEKITSESEGFV 171 Query: 268 FFATIAVTGVTGI 230 + T+A GVTG+ Sbjct: 172 YAVTVA--GVTGV 182
>ALKH_SHIFL (P0A958) KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate| aldolase (EC 4.1.3.16) (2-keto-4-hydroxyglutarate aldolase) (KHG-aldolase); 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) (Phospho-2-dehydro-3-deoxygluconate aldolase) Length = 213 Score = 29.3 bits (64), Expect = 7.7 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = -2 Query: 367 PLLSPS*AGTLPLLPTSPPEDSDDLSADF--ERFLFFATIAVTGVTGIPASAATFS 206 PLL + GT+PL+P L D+ + F FF A GV + A A FS Sbjct: 99 PLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFS 154
>ALKH_ECOLI (P0A955) KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate| aldolase (EC 4.1.3.16) (2-keto-4-hydroxyglutarate aldolase) (KHG-aldolase); 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) (Phospho-2-dehydro-3-deoxygluconate aldolase) Length = 213 Score = 29.3 bits (64), Expect = 7.7 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = -2 Query: 367 PLLSPS*AGTLPLLPTSPPEDSDDLSADF--ERFLFFATIAVTGVTGIPASAATFS 206 PLL + GT+PL+P L D+ + F FF A GV + A A FS Sbjct: 99 PLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFS 154
>ALKH_ECOL6 (P0A956) KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate| aldolase (EC 4.1.3.16) (2-keto-4-hydroxyglutarate aldolase) (KHG-aldolase); 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) (Phospho-2-dehydro-3-deoxygluconate aldolase) Length = 213 Score = 29.3 bits (64), Expect = 7.7 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = -2 Query: 367 PLLSPS*AGTLPLLPTSPPEDSDDLSADF--ERFLFFATIAVTGVTGIPASAATFS 206 PLL + GT+PL+P L D+ + F FF A GV + A A FS Sbjct: 99 PLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFS 154
>ALKH_ECO57 (P0A957) KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate| aldolase (EC 4.1.3.16) (2-keto-4-hydroxyglutarate aldolase) (KHG-aldolase); 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) (Phospho-2-dehydro-3-deoxygluconate aldolase) Length = 213 Score = 29.3 bits (64), Expect = 7.7 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = -2 Query: 367 PLLSPS*AGTLPLLPTSPPEDSDDLSADF--ERFLFFATIAVTGVTGIPASAATFS 206 PLL + GT+PL+P L D+ + F FF A GV + A A FS Sbjct: 99 PLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFS 154
>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 7389 Score = 29.3 bits (64), Expect = 7.7 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Frame = +3 Query: 114 IDATSEDQQMGD--DTDAITFDDASMSNLXKQFEKVAAEAG 230 + A ED+ G+ +TDA +A+ NL +Q+EKV A+ G Sbjct: 3739 LGAGEEDEVNGNLLETDAEGHSEATKGNLNQQYEKVKAQHG 3779
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 28.9 bits (63), Expect = 10.0 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +3 Query: 408 NPPTPLPPQCLRLPPSATPRGSALKSGVRPGP 503 +PP+P+PP +PPS P A P P Sbjct: 309 SPPSPVPPSPAPVPPSPAPPSPAPSPPPSPAP 340
>PT1_STRCO (Q9KZP1) Phosphoenolpyruvate-protein phosphotransferase (EC| 2.7.3.9) (Phosphotransferase system, enzyme I) Length = 556 Score = 28.9 bits (63), Expect = 10.0 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Frame = -2 Query: 502 GPGRTPLFSALPL-----GVADGGSLKHCGGKGVGGFQTRLLFIENLTFLP 365 GPG T +PL G AD + G +GVG F+T LF+++ P Sbjct: 251 GPGATSDGHKVPLLANIGGPADVPAAVEAGAEGVGLFRTEFLFLDDSANAP 301
>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) (EBNA2) Length = 451 Score = 28.9 bits (63), Expect = 10.0 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = +3 Query: 411 PPTPLPPQCLRLPPSAT 461 PPTPLPP L +PP T Sbjct: 168 PPTPLPPATLTVPPRPT 184
>Y640_MYCPN (P75157) Hypothetical lipoprotein MG439 homolog 5 precursor| (E09_orf300) Length = 300 Score = 28.9 bits (63), Expect = 10.0 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 11/88 (12%) Frame = +3 Query: 315 GDVGSKGNVPAQDGDKSGKKVRFSMKSNLVWNPPT-----------PLPPQCLRLPPSAT 461 G GS G + + +G+K +F+ + PPT +P + P A Sbjct: 181 GGKGSNGKNSIDESEYTGEKAKFTGNFIFTYTPPTGGARNFSDKSFDVPTSSINFP--AN 238 Query: 462 PRGSALKSGVRPGPIKESSTQVKKAKAK 545 + S + + ES+ QVKK K++ Sbjct: 239 VKIDVTTSHTKLNELLESNEQVKKMKSR 266
>EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) Length = 487 Score = 28.9 bits (63), Expect = 10.0 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = +3 Query: 411 PPTPLPPQCLRLPPSAT 461 PPTPLPP L +PP T Sbjct: 202 PPTPLPPATLTVPPRPT 218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,748,653 Number of Sequences: 219361 Number of extensions: 1228218 Number of successful extensions: 5307 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4707 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5264 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
