| Clone Name | bags20c13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121393.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023129N03, full insert sequence Length = 2102 Score = 577 bits (291), Expect = e-161 Identities = 474/535 (88%) Strand = Plus / Plus Query: 5 ggaaggaagaatgccgagagatggattctcatgttggtagtggtaaagttatcacagcac 64 |||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||| Sbjct: 657 ggaaggaagactgccgagagatggattctcatgttggtagcgggaaagtgatcacagcac 716 Query: 65 cacttatcactgaggatggaagacctattaaagatcctttggttttacttgaggctactt 124 || | |||||||||||||| ||||| || ||||| |||||||||||||| |||||||||| Sbjct: 717 cattaatcactgaggatggtagacccatcaaagaccctttggttttactcgaggctactt 776 Query: 125 caaaccaaaacacctcagacggtgcttcaactagcagcaacaatggaattgaagtagacg 184 || | ||||||| ||||||||| ||||||| ||||||| ||||||| |||| |||| | Sbjct: 777 catccgaaaacacatcagacggtacttcaacaagcagcacaaatggaaatgaaatagatg 836 Query: 185 attctgcagagcgtattactgacaagcaaattattgagtggaagcttacattacatcaaa 244 | |||||| |||||||| || |||| |||||||| ||||||||||| || ||||||| Sbjct: 837 aatctgcaagccgtattacagataagctcattattgactggaagcttactttgcatcaaa 896 Query: 245 ttggacttgacgtgctacgtactgaccgcaccatggtattttacgagaacaaggaaaatc 304 |||||||||| ||||||||||| |||||||| ||||||||||| |||||||| ||||||| Sbjct: 897 ttggacttgatgtgctacgtacggaccgcactatggtattttatgagaacaaagaaaatc 956 Query: 305 tttcaaagttatgggatattctagccgtgtatgcatggattgacaaagatgttggttact 364 |||| ||||| |||||||||||||| |||||||| |||||||| |||||||||||||||| Sbjct: 957 tttccaagttgtgggatattctagctgtgtatgcttggattgataaagatgttggttact 1016 Query: 365 gtcaaggaatgagtgatttatgctcaccgatgattgtgctactcaatgatgaggcagatg 424 ||||||||||||| ||||||||||| || ||||| ||||||||||| ||||| ||||||| Sbjct: 1017 gtcaaggaatgagcgatttatgctcgccaatgatcgtgctactcaaggatgaagcagatg 1076 Query: 425 cgttttggtgctttgagaaattgatgcgtagattgcgaggaaatttcagatgcacagatc 484 | ||||||||||||||||||||||||||||||||| ||||||||| || |||||| |||| Sbjct: 1077 ccttttggtgctttgagaaattgatgcgtagattgagaggaaattccaaatgcacggatc 1136 Query: 485 aatcagtcggggttgctaaccaacttcagcaccttgcatccattattcaggtgct 539 |||| || || || ||||| ||||||||| |||||||||| |||||||||||||| Sbjct: 1137 aatctgtgggtgtggctaatcaacttcagtaccttgcatctattattcaggtgct 1191
>gb|AY110881.1| Zea mays CL4521_1 mRNA sequence Length = 1181 Score = 230 bits (116), Expect = 4e-57 Identities = 177/196 (90%), Gaps = 1/196 (0%) Strand = Plus / Plus Query: 341 ggattgacaaagatgttggttactgtcaaggaatgagtgatttatgctcaccgatgattg 400 ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| | Sbjct: 16 ggattgacaaagatgttggtt-ctgccaaggaatgagtgatttatgctcaccaatgatag 74 Query: 401 tgctactcaatgatgaggcagatgcgttttggtgctttgagaaattgatgcgtagattgc 460 | ||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 75 ttctactaaaggatgaagcagatgccttttggtgctttgagaaattgatgcgtagattgc 134 Query: 461 gaggaaatttcagatgcacagatcaatcagtcggggttgctaaccaacttcagcaccttg 520 |||||||||||| ||||||||||||||| || || || | ||||||||||| || |||| Sbjct: 135 gaggaaatttcaaatgcacagatcaatctgtgggagtatccaaccaacttcaacatcttg 194 Query: 521 catccattattcaggt 536 |||| ||||||||||| Sbjct: 195 catctattattcaggt 210
>gb|AY109145.1| Zea mays PCO088682 mRNA sequence Length = 545 Score = 224 bits (113), Expect = 2e-55 Identities = 218/253 (86%) Strand = Plus / Plus Query: 287 acgagaacaaggaaaatctttcaaagttatgggatattctagccgtgtatgcatggattg 346 |||||||||| || || |||||||||| ||||||||||| || || ||||||||||| | Sbjct: 3 acgagaacaaagataacatttcaaagttgtgggatattcttgctgtctatgcatggatcg 62 Query: 347 acaaagatgttggttactgtcaaggaatgagtgatttatgctcaccgatgattgtgctac 406 ||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 63 acaaagaagttggttattgtcaaggaatgagtgatttatgttcacccatgatagtgctac 122 Query: 407 tcaatgatgaggcagatgcgttttggtgctttgagaaattgatgcgtagattgcgaggaa 466 || | |||| |||||||| |||||||||||||||| ||||||||||||| ||||||| | Sbjct: 123 tccacaatgaagcagatgcattttggtgctttgagagattgatgcgtagactgcgaggta 182 Query: 467 atttcagatgcacagatcaatcagtcggggttgctaaccaacttcagcaccttgcatcca 526 |||||||||||||| | || || || ||||| | ||||| |||||||| ||||| || | Sbjct: 183 atttcagatgcacacaacagtctgttggggtggaaaaccagcttcagcatcttgcttcta 242 Query: 527 ttattcaggtgct 539 | ||||||||||| Sbjct: 243 tcattcaggtgct 255
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 222 bits (112), Expect = 9e-55 Identities = 211/244 (86%) Strand = Plus / Plus Query: 5 ggaaggaagaatgccgagagatggattctcatgttggtagtggtaaagttatcacagcac 64 |||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||| Sbjct: 20362246 ggaaggaagactgccgagagatggattctcatgttggtagcgggaaagtgatcacagcac 20362305 Query: 65 cacttatcactgaggatggaagacctattaaagatcctttggttttacttgaggctactt 124 || | |||||||||||||| ||||| || ||||| |||||||||||||| |||||||||| Sbjct: 20362306 cattaatcactgaggatggtagacccatcaaagaccctttggttttactcgaggctactt 20362365 Query: 125 caaaccaaaacacctcagacggtgcttcaactagcagcaacaatggaattgaagtagacg 184 || | ||||||| ||||||||| ||||||| ||||||| ||||||| |||| |||| | Sbjct: 20362366 catccgaaaacacatcagacggtacttcaacaagcagcacaaatggaaatgaaatagatg 20362425 Query: 185 attctgcagagcgtattactgacaagcaaattattgagtggaagcttacattacatcaaa 244 | |||||| |||||||| || |||| |||||||| ||||||||||| || ||||||| Sbjct: 20362426 aatctgcaagccgtattacagataagctcattattgactggaagcttactttgcatcaaa 20362485 Query: 245 ttgg 248 |||| Sbjct: 20362486 ttgg 20362489 Score = 168 bits (85), Expect = 1e-38 Identities = 115/125 (92%) Strand = Plus / Plus Query: 247 ggacttgacgtgctacgtactgaccgcaccatggtattttacgagaacaaggaaaatctt 306 |||||||| ||||||||||| |||||||| ||||||||||| |||||||| ||||||||| Sbjct: 20362575 ggacttgatgtgctacgtacggaccgcactatggtattttatgagaacaaagaaaatctt 20362634 Query: 307 tcaaagttatgggatattctagccgtgtatgcatggattgacaaagatgttggttactgt 366 || ||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||| Sbjct: 20362635 tccaagttgtgggatattctagctgtgtatgcttggattgataaagatgttggttactgt 20362694 Query: 367 caagg 371 ||||| Sbjct: 20362695 caagg 20362699 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Plus Query: 369 aggaatgagtgatttatgctcaccgatgattgtgctactcaatgatgaggcagatgcgtt 428 ||||||||| ||||||||||| || ||||| ||||||||||| ||||| |||||||| || Sbjct: 20362777 aggaatgagcgatttatgctcgccaatgatcgtgctactcaaggatgaagcagatgcctt 20362836 Query: 429 ttggtgctttgagaaattgatgcgtagattg 459 ||||||||||||||||||||||||||||||| Sbjct: 20362837 ttggtgctttgagaaattgatgcgtagattg 20362867 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 461 gaggaaatttcagatgcacagatcaatcagtcggggttgctaaccaacttcagcaccttg 520 |||||||||||| |||||| |||||||| || || || ||||| ||||||||| |||||| Sbjct: 20363017 gaggaaatttcaaatgcacggatcaatctgtgggtgtggctaatcaacttcagtaccttg 20363076 Query: 521 catccattattcaggtgct 539 |||| |||||||||||||| Sbjct: 20363077 catctattattcaggtgct 20363095
>dbj|AP005105.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0052O11 Length = 106467 Score = 222 bits (112), Expect = 9e-55 Identities = 211/244 (86%) Strand = Plus / Plus Query: 5 ggaaggaagaatgccgagagatggattctcatgttggtagtggtaaagttatcacagcac 64 |||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||| Sbjct: 104857 ggaaggaagactgccgagagatggattctcatgttggtagcgggaaagtgatcacagcac 104916 Query: 65 cacttatcactgaggatggaagacctattaaagatcctttggttttacttgaggctactt 124 || | |||||||||||||| ||||| || ||||| |||||||||||||| |||||||||| Sbjct: 104917 cattaatcactgaggatggtagacccatcaaagaccctttggttttactcgaggctactt 104976 Query: 125 caaaccaaaacacctcagacggtgcttcaactagcagcaacaatggaattgaagtagacg 184 || | ||||||| ||||||||| ||||||| ||||||| ||||||| |||| |||| | Sbjct: 104977 catccgaaaacacatcagacggtacttcaacaagcagcacaaatggaaatgaaatagatg 105036 Query: 185 attctgcagagcgtattactgacaagcaaattattgagtggaagcttacattacatcaaa 244 | |||||| |||||||| || |||| |||||||| ||||||||||| || ||||||| Sbjct: 105037 aatctgcaagccgtattacagataagctcattattgactggaagcttactttgcatcaaa 105096 Query: 245 ttgg 248 |||| Sbjct: 105097 ttgg 105100 Score = 168 bits (85), Expect = 1e-38 Identities = 115/125 (92%) Strand = Plus / Plus Query: 247 ggacttgacgtgctacgtactgaccgcaccatggtattttacgagaacaaggaaaatctt 306 |||||||| ||||||||||| |||||||| ||||||||||| |||||||| ||||||||| Sbjct: 105186 ggacttgatgtgctacgtacggaccgcactatggtattttatgagaacaaagaaaatctt 105245 Query: 307 tcaaagttatgggatattctagccgtgtatgcatggattgacaaagatgttggttactgt 366 || ||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||| Sbjct: 105246 tccaagttgtgggatattctagctgtgtatgcttggattgataaagatgttggttactgt 105305 Query: 367 caagg 371 ||||| Sbjct: 105306 caagg 105310 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Plus Query: 369 aggaatgagtgatttatgctcaccgatgattgtgctactcaatgatgaggcagatgcgtt 428 ||||||||| ||||||||||| || ||||| ||||||||||| ||||| |||||||| || Sbjct: 105388 aggaatgagcgatttatgctcgccaatgatcgtgctactcaaggatgaagcagatgcctt 105447 Query: 429 ttggtgctttgagaaattgatgcgtagattg 459 ||||||||||||||||||||||||||||||| Sbjct: 105448 ttggtgctttgagaaattgatgcgtagattg 105478 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 461 gaggaaatttcagatgcacagatcaatcagtcggggttgctaaccaacttcagcaccttg 520 |||||||||||| |||||| |||||||| || || || ||||| ||||||||| |||||| Sbjct: 105628 gaggaaatttcaaatgcacggatcaatctgtgggtgtggctaatcaacttcagtaccttg 105687 Query: 521 catccattattcaggtgct 539 |||| |||||||||||||| Sbjct: 105688 catctattattcaggtgct 105706
>dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0678G09 Length = 139220 Score = 222 bits (112), Expect = 9e-55 Identities = 211/244 (86%) Strand = Plus / Plus Query: 5 ggaaggaagaatgccgagagatggattctcatgttggtagtggtaaagttatcacagcac 64 |||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||| Sbjct: 71146 ggaaggaagactgccgagagatggattctcatgttggtagcgggaaagtgatcacagcac 71205 Query: 65 cacttatcactgaggatggaagacctattaaagatcctttggttttacttgaggctactt 124 || | |||||||||||||| ||||| || ||||| |||||||||||||| |||||||||| Sbjct: 71206 cattaatcactgaggatggtagacccatcaaagaccctttggttttactcgaggctactt 71265 Query: 125 caaaccaaaacacctcagacggtgcttcaactagcagcaacaatggaattgaagtagacg 184 || | ||||||| ||||||||| ||||||| ||||||| ||||||| |||| |||| | Sbjct: 71266 catccgaaaacacatcagacggtacttcaacaagcagcacaaatggaaatgaaatagatg 71325 Query: 185 attctgcagagcgtattactgacaagcaaattattgagtggaagcttacattacatcaaa 244 | |||||| |||||||| || |||| |||||||| ||||||||||| || ||||||| Sbjct: 71326 aatctgcaagccgtattacagataagctcattattgactggaagcttactttgcatcaaa 71385 Query: 245 ttgg 248 |||| Sbjct: 71386 ttgg 71389 Score = 168 bits (85), Expect = 1e-38 Identities = 115/125 (92%) Strand = Plus / Plus Query: 247 ggacttgacgtgctacgtactgaccgcaccatggtattttacgagaacaaggaaaatctt 306 |||||||| ||||||||||| |||||||| ||||||||||| |||||||| ||||||||| Sbjct: 71475 ggacttgatgtgctacgtacggaccgcactatggtattttatgagaacaaagaaaatctt 71534 Query: 307 tcaaagttatgggatattctagccgtgtatgcatggattgacaaagatgttggttactgt 366 || ||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||| Sbjct: 71535 tccaagttgtgggatattctagctgtgtatgcttggattgataaagatgttggttactgt 71594 Query: 367 caagg 371 ||||| Sbjct: 71595 caagg 71599 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Plus Query: 369 aggaatgagtgatttatgctcaccgatgattgtgctactcaatgatgaggcagatgcgtt 428 ||||||||| ||||||||||| || ||||| ||||||||||| ||||| |||||||| || Sbjct: 71677 aggaatgagcgatttatgctcgccaatgatcgtgctactcaaggatgaagcagatgcctt 71736 Query: 429 ttggtgctttgagaaattgatgcgtagattg 459 ||||||||||||||||||||||||||||||| Sbjct: 71737 ttggtgctttgagaaattgatgcgtagattg 71767 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 461 gaggaaatttcagatgcacagatcaatcagtcggggttgctaaccaacttcagcaccttg 520 |||||||||||| |||||| |||||||| || || || ||||| ||||||||| |||||| Sbjct: 71917 gaggaaatttcaaatgcacggatcaatctgtgggtgtggctaatcaacttcagtaccttg 71976 Query: 521 catccattattcaggtgct 539 |||| |||||||||||||| Sbjct: 71977 catctattattcaggtgct 71995
>dbj|AK065976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047L05, full insert sequence Length = 1717 Score = 218 bits (110), Expect = 1e-53 Identities = 212/246 (86%) Strand = Plus / Plus Query: 211 caaattattgagtggaagcttacattacatcaaattggacttgacgtgctacgtactgac 270 |||||||| || ||||||||| ||||||||||||| ||||| ||||| || ||||| Sbjct: 702 caaattatcgaatggaagcttttgctacatcaaattggccttgatgtgctgcgcactgat 761 Query: 271 cgcaccatggtattttacgagaacaaggaaaatctttcaaagttatgggatattctagcc 330 || ||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || Sbjct: 762 cgatccatggtgttttatgagaacaaagaaaatctttcgaagttatgggatattcttgct 821 Query: 331 gtgtatgcatggattgacaaagatgttggttactgtcaaggaatgagtgatttatgctca 390 || ||||| ||||| |||||||| |||| || ||||||||||||||||||||||||||| Sbjct: 822 gtatatgcttggatcgacaaagaaattggctattgtcaaggaatgagtgatttatgctca 881 Query: 391 ccgatgattgtgctactcaatgatgaggcagatgcgttttggtgctttgagaaattgatg 450 |||||||| ||||| ||||| || || |||||||| |||||||||||||||| ||| ||| Sbjct: 882 ccgatgatagtgctgctcaacgacgaagcagatgcattttggtgctttgagagattaatg 941 Query: 451 cgtaga 456 |||||| Sbjct: 942 cgtaga 947 Score = 109 bits (55), Expect = 1e-20 Identities = 109/127 (85%) Strand = Plus / Plus Query: 5 ggaaggaagaatgccgagagatggattctcatgttggtagtggtaaagttatcacagcac 64 ||||| |||||||| ||| ||||| || ||||||||||| ||| || |||||||||| | Sbjct: 496 ggaagcaagaatgcaaagatatggactcccatgttggtagcggtgaaattatcacagccc 555 Query: 65 cacttatcactgaggatggaagacctattaaagatcctttggttttacttgaggctactt 124 || |||| ||||||||||||| ||||||||| |||||||||||||| || || ||||||| Sbjct: 556 caattataactgaggatggaaaacctattaaggatcctttggttttgctcgaagctactt 615 Query: 125 caaacca 131 || |||| Sbjct: 616 cagacca 622
>gb|AC136148.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0029K08, complete sequence Length = 136687 Score = 117 bits (59), Expect = 4e-23 Identities = 110/127 (86%) Strand = Plus / Minus Query: 5 ggaaggaagaatgccgagagatggattctcatgttggtagtggtaaagttatcacagcac 64 ||||| |||||||| ||| ||||| || ||||||||||| |||||| |||||||||| | Sbjct: 73269 ggaagcaagaatgcaaagatatggactcccatgttggtagcggtaaaattatcacagccc 73210 Query: 65 cacttatcactgaggatggaagacctattaaagatcctttggttttacttgaggctactt 124 || |||| ||||||||||||| ||||||||| |||||||||||||| || || ||||||| Sbjct: 73209 caattataactgaggatggaaaacctattaaggatcctttggttttgctcgaagctactt 73150 Query: 125 caaacca 131 || |||| Sbjct: 73149 cagacca 73143 Score = 111 bits (56), Expect = 2e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 369 aggaatgagtgatttatgctcaccgatgattgtgctactcaatgatgaggcagatgcgtt 428 |||||||||||||||||||||||||||||| ||||| ||||| || || |||||||| || Sbjct: 72712 aggaatgagtgatttatgctcaccgatgatagtgctgctcaacgacgaagcagatgcatt 72653 Query: 429 ttggtgctttgagaaattgatgcgtaga 456 |||||||||||||| ||| ||||||||| Sbjct: 72652 ttggtgctttgagagattaatgcgtaga 72625 Score = 91.7 bits (46), Expect = 2e-15 Identities = 103/122 (84%) Strand = Plus / Minus Query: 250 cttgacgtgctacgtactgaccgcaccatggtattttacgagaacaaggaaaatctttca 309 ||||| ||||| || ||||| || ||||||| ||||| |||||||| ||||||||||| Sbjct: 72918 cttgatgtgctgcgcactgatcgatccatggtgttttatgagaacaaagaaaatctttcg 72859 Query: 310 aagttatgggatattctagccgtgtatgcatggattgacaaagatgttggttactgtcaa 369 ||||||||||||||||| || || ||||| ||||| |||||||| |||| || |||||| Sbjct: 72858 aagttatgggatattcttgctgtatatgcttggatcgacaaagaaattggctattgtcaa 72799 Query: 370 gg 371 || Sbjct: 72798 gg 72797 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 459 gcgaggaaatttcagatgcacagatcaatcagtcggggttgctaaccaacttcagcacct 518 |||||||||||||||||||||| | ||||| || ||||| | ||||| ||||||||||| Sbjct: 72547 gcgaggaaatttcagatgcacacagcaatctgttggggtggagaaccagcttcagcacct 72488 Query: 519 tgcatccattattcaggtgct 539 ||| || || ||||| ||||| Sbjct: 72487 tgcgtctatcattcaagtgct 72467
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 117 bits (59), Expect = 4e-23 Identities = 110/127 (86%) Strand = Plus / Minus Query: 5 ggaaggaagaatgccgagagatggattctcatgttggtagtggtaaagttatcacagcac 64 ||||| |||||||| ||| ||||| || ||||||||||| |||||| |||||||||| | Sbjct: 21415519 ggaagcaagaatgcaaagatatggactcccatgttggtagcggtaaaattatcacagccc 21415460 Query: 65 cacttatcactgaggatggaagacctattaaagatcctttggttttacttgaggctactt 124 || |||| ||||||||||||| ||||||||| |||||||||||||| || || ||||||| Sbjct: 21415459 caattataactgaggatggaaaacctattaaggatcctttggttttgctcgaagctactt 21415400 Query: 125 caaacca 131 || |||| Sbjct: 21415399 cagacca 21415393 Score = 111 bits (56), Expect = 2e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 369 aggaatgagtgatttatgctcaccgatgattgtgctactcaatgatgaggcagatgcgtt 428 |||||||||||||||||||||||||||||| ||||| ||||| || || |||||||| || Sbjct: 21414962 aggaatgagtgatttatgctcaccgatgatagtgctgctcaacgacgaagcagatgcatt 21414903 Query: 429 ttggtgctttgagaaattgatgcgtaga 456 |||||||||||||| ||| ||||||||| Sbjct: 21414902 ttggtgctttgagagattaatgcgtaga 21414875 Score = 91.7 bits (46), Expect = 2e-15 Identities = 103/122 (84%) Strand = Plus / Minus Query: 250 cttgacgtgctacgtactgaccgcaccatggtattttacgagaacaaggaaaatctttca 309 ||||| ||||| || ||||| || ||||||| ||||| |||||||| ||||||||||| Sbjct: 21415168 cttgatgtgctgcgcactgatcgatccatggtgttttatgagaacaaagaaaatctttcg 21415109 Query: 310 aagttatgggatattctagccgtgtatgcatggattgacaaagatgttggttactgtcaa 369 ||||||||||||||||| || || ||||| ||||| |||||||| |||| || |||||| Sbjct: 21415108 aagttatgggatattcttgctgtatatgcttggatcgacaaagaaattggctattgtcaa 21415049 Query: 370 gg 371 || Sbjct: 21415048 gg 21415047 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 459 gcgaggaaatttcagatgcacagatcaatcagtcggggttgctaaccaacttcagcacct 518 |||||||||||||||||||||| | ||||| || ||||| | ||||| ||||||||||| Sbjct: 21414797 gcgaggaaatttcagatgcacacagcaatctgttggggtggagaaccagcttcagcacct 21414738 Query: 519 tgcatccattattcaggtgct 539 ||| || || ||||| ||||| Sbjct: 21414737 tgcgtctatcattcaagtgct 21414717
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 117 bits (59), Expect = 4e-23 Identities = 110/127 (86%) Strand = Plus / Minus Query: 5 ggaaggaagaatgccgagagatggattctcatgttggtagtggtaaagttatcacagcac 64 ||||| |||||||| ||| ||||| || ||||||||||| |||||| |||||||||| | Sbjct: 21725718 ggaagcaagaatgcaaagatatggactcccatgttggtagcggtaaaattatcacagccc 21725659 Query: 65 cacttatcactgaggatggaagacctattaaagatcctttggttttacttgaggctactt 124 || |||| ||||||||||||| ||||||||| |||||||||||||| || || ||||||| Sbjct: 21725658 caattataactgaggatggaaaacctattaaggatcctttggttttgctcgaagctactt 21725599 Query: 125 caaacca 131 || |||| Sbjct: 21725598 cagacca 21725592 Score = 111 bits (56), Expect = 2e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 369 aggaatgagtgatttatgctcaccgatgattgtgctactcaatgatgaggcagatgcgtt 428 |||||||||||||||||||||||||||||| ||||| ||||| || || |||||||| || Sbjct: 21725161 aggaatgagtgatttatgctcaccgatgatagtgctgctcaacgacgaagcagatgcatt 21725102 Query: 429 ttggtgctttgagaaattgatgcgtaga 456 |||||||||||||| ||| ||||||||| Sbjct: 21725101 ttggtgctttgagagattaatgcgtaga 21725074 Score = 91.7 bits (46), Expect = 2e-15 Identities = 103/122 (84%) Strand = Plus / Minus Query: 250 cttgacgtgctacgtactgaccgcaccatggtattttacgagaacaaggaaaatctttca 309 ||||| ||||| || ||||| || ||||||| ||||| |||||||| ||||||||||| Sbjct: 21725367 cttgatgtgctgcgcactgatcgatccatggtgttttatgagaacaaagaaaatctttcg 21725308 Query: 310 aagttatgggatattctagccgtgtatgcatggattgacaaagatgttggttactgtcaa 369 ||||||||||||||||| || || ||||| ||||| |||||||| |||| || |||||| Sbjct: 21725307 aagttatgggatattcttgctgtatatgcttggatcgacaaagaaattggctattgtcaa 21725248 Query: 370 gg 371 || Sbjct: 21725247 gg 21725246 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 459 gcgaggaaatttcagatgcacagatcaatcagtcggggttgctaaccaacttcagcacct 518 |||||||||||||||||||||| | ||||| || ||||| | ||||| ||||||||||| Sbjct: 21724996 gcgaggaaatttcagatgcacacagcaatctgttggggtggagaaccagcttcagcacct 21724937 Query: 519 tgcatccattattcaggtgct 539 ||| || || ||||| ||||| Sbjct: 21724936 tgcgtctatcattcaagtgct 21724916
>ref|NM_124859.3| Arabidopsis thaliana unknown protein AT5G54780 mRNA, complete cds Length = 1719 Score = 69.9 bits (35), Expect = 8e-09 Identities = 125/155 (80%) Strand = Plus / Plus Query: 316 tgggatattctagccgtgtatgcatggattgacaaagatgttggttactgtcaaggaatg 375 ||||| |||||||| | || |||||||| ||||| ||||||||||| || ||||||||| Sbjct: 763 tgggacattctagctctttacgcatggatagacaatgatgttggttattgccaaggaatg 822 Query: 376 agtgatttatgctcaccgatgattgtgctactcaatgatgaggcagatgcgttttggtgc 435 |||||| | || || || |||||| |||| || | || || || ||||| |||||||| Sbjct: 823 agtgatctttgttcccctatgattatgcttcttgaggacgaagctgatgctttttggtgt 882 Query: 436 tttgagaaattgatgcgtagattgcgaggaaattt 470 || || | ||||||||| |||||||||| ||||| Sbjct: 883 ttcgaaagattgatgcgccgattgcgagggaattt 917
>gb|AY110194.1| Zea mays CL62128_1 mRNA sequence Length = 606 Score = 56.0 bits (28), Expect = 1e-04 Identities = 60/67 (89%), Gaps = 3/67 (4%) Strand = Plus / Plus Query: 5 ggaaggaagaatgccgagagatggattctcatgttggtagtggtaaagttatcacagcac 64 |||| ||||| |||||| |||||||||||||||||||||| || ||||| || ||||||| Sbjct: 527 ggaaagaagattgccgacagatggattctcatgttggtagngg-aaagt-at-acagcac 583 Query: 65 cacttat 71 ||||||| Sbjct: 584 cacttat 590
>ref|XM_468334.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1747 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 316 tgggatattctagccgtgtatgcatggattgacaaagatgttggttactgtcaaggaatg 375 ||||| ||||| || || ||| ||||| ||||||| || | ||||| |||||||||||| Sbjct: 813 tgggacattcttgcagtttattcatgggttgacaaggacatcggttattgtcaaggaatg 872 Query: 376 agtgatttatgctcacc 392 |||||| | |||||||| Sbjct: 873 agtgatctttgctcacc 889 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 421 gatgcgttttggtgctttgagaaattgatgcgtagattgcgaggaaatttc 471 ||||||||||||||||||||| | | ||||| || |||||||||||||| Sbjct: 918 gatgcgttttggtgctttgagcgacttatgcgcagggtgcgaggaaatttc 968
>gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete sequence Length = 127640 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 307 tcaaagttatgggatattctagccgtgtatgcatggattgacaaagatgttggttactgt 366 ||||| |||||||||||||| || || ||||| ||||| || ||||| ||||| ||| || Sbjct: 78585 tcaaaattatgggatattcttgcggtttatgcttggatagataaagaagttggatacggt 78526 Query: 367 caagg 371 ||||| Sbjct: 78525 caagg 78521 Score = 42.1 bits (21), Expect = 1.9 Identities = 60/73 (82%) Strand = Plus / Minus Query: 369 aggaatgagtgatttatgctcaccgatgattgtgctactcaatgatgaggcagatgcgtt 428 |||||||||||| ||||||| || ||||| | || || ||||||| ||||| || || Sbjct: 78196 aggaatgagtgacctatgctccccaatgataattcttcttgatgatgaagcagacgcatt 78137 Query: 429 ttggtgctttgag 441 ||||||||||||| Sbjct: 78136 ttggtgctttgag 78124
>dbj|AK071602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102D17, full insert sequence Length = 1747 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 316 tgggatattctagccgtgtatgcatggattgacaaagatgttggttactgtcaaggaatg 375 ||||| ||||| || || ||| ||||| ||||||| || | ||||| |||||||||||| Sbjct: 813 tgggacattcttgcagtttattcatgggttgacaaggacatcggttattgtcaaggaatg 872 Query: 376 agtgatttatgctcacc 392 |||||| | |||||||| Sbjct: 873 agtgatctttgctcacc 889 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 421 gatgcgttttggtgctttgagaaattgatgcgtagattgcgaggaaatttc 471 ||||||||||||||||||||| | | ||||| || |||||||||||||| Sbjct: 918 gatgcgttttggtgctttgagcgacttatgcgcagggtgcgaggaaatttc 968
>ref|NM_118844.2| Arabidopsis thaliana unknown protein AT4G27100 transcript variant AT4G27100.1 mRNA, complete cds Length = 1626 Score = 48.1 bits (24), Expect = 0.030 Identities = 84/104 (80%) Strand = Plus / Plus Query: 278 tggtattttacgagaacaaggaaaatctttcaaagttatgggatattctagccgtgtatg 337 |||||||||| ||||| ||||| || | || ||| | ||||||||||| | || || | Sbjct: 844 tggtattttatgagaaaaaggagaacttatcgaagctctgggatattctgtctgtttacg 903 Query: 338 catggattgacaaagatgttggttactgtcaaggaatgagtgat 381 | ||||| ||||| ||||| || || |||||||||||||||||| Sbjct: 904 cctggatagacaacgatgtcgggtattgtcaaggaatgagtgat 947
>ref|NM_001036653.1| Arabidopsis thaliana unknown protein AT4G27100 transcript variant AT4G27100.2 mRNA, complete cds Length = 1881 Score = 48.1 bits (24), Expect = 0.030 Identities = 84/104 (80%) Strand = Plus / Plus Query: 278 tggtattttacgagaacaaggaaaatctttcaaagttatgggatattctagccgtgtatg 337 |||||||||| ||||| ||||| || | || ||| | ||||||||||| | || || | Sbjct: 844 tggtattttatgagaaaaaggagaacttatcgaagctctgggatattctgtctgtttacg 903 Query: 338 catggattgacaaagatgttggttactgtcaaggaatgagtgat 381 | ||||| ||||| ||||| || || |||||||||||||||||| Sbjct: 904 cctggatagacaacgatgtcgggtattgtcaaggaatgagtgat 947
>ref|XM_660310.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.40446) partial mRNA Length = 972 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 353 atgttggttactgtcaaggaatga 376 |||||||||||||||||||||||| Sbjct: 131 atgttggttactgtcaaggaatga 154
>gb|AY142502.1| Arabidopsis thaliana unknown protein (At4g27100) mRNA, complete cds Length = 1342 Score = 48.1 bits (24), Expect = 0.030 Identities = 84/104 (80%) Strand = Plus / Plus Query: 278 tggtattttacgagaacaaggaaaatctttcaaagttatgggatattctagccgtgtatg 337 |||||||||| ||||| ||||| || | || ||| | ||||||||||| | || || | Sbjct: 560 tggtattttatgagaaaaaggagaacttatcgaagctctgggatattctgtctgtttacg 619 Query: 338 catggattgacaaagatgttggttactgtcaaggaatgagtgat 381 | ||||| ||||| ||||| || || |||||||||||||||||| Sbjct: 620 cctggatagacaacgatgtcgggtattgtcaaggaatgagtgat 663
>dbj|AK221621.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-93-E05 Length = 1854 Score = 48.1 bits (24), Expect = 0.030 Identities = 84/104 (80%) Strand = Plus / Plus Query: 278 tggtattttacgagaacaaggaaaatctttcaaagttatgggatattctagccgtgtatg 337 |||||||||| ||||| ||||| || | || ||| | ||||||||||| | || || | Sbjct: 815 tggtattttatgagaaaaaggagaacttatcgaagctctgggatattctgtctgtttacg 874 Query: 338 catggattgacaaagatgttggttactgtcaaggaatgagtgat 381 | ||||| ||||| ||||| || || |||||||||||||||||| Sbjct: 875 cctggatagacaacgatgtcgggtattgtcaaggaatgagtgat 918
>ref|XM_549801.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2055 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 412 gatgaggcagatgcgttttggtgctttgaga 442 ||||| |||||||| |||||||||||||||| Sbjct: 1345 gatgatgcagatgccttttggtgctttgaga 1375
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 412 gatgaggcagatgcgttttggtgctttgaga 442 ||||| |||||||| |||||||||||||||| Sbjct: 7273 gatgatgcagatgccttttggtgctttgaga 7303
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672D08 Length = 173729 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 412 gatgaggcagatgcgttttggtgctttgaga 442 ||||| |||||||| |||||||||||||||| Sbjct: 5075 gatgatgcagatgccttttggtgctttgaga 5105
>dbj|AP008219.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, fosmid clone:OSJNOa264G09 Length = 31687 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 412 gatgaggcagatgcgttttggtgctttgaga 442 ||||| |||||||| |||||||||||||||| Sbjct: 7273 gatgatgcagatgccttttggtgctttgaga 7303
>gb|AC163099.5| Mus musculus chromosome 8, clone RP23-395L6, complete sequence Length = 188439 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 354 tgttggttactgtcaaggaatg 375 |||||||||||||||||||||| Sbjct: 73310 tgttggttactgtcaaggaatg 73331
>ref|NM_123559.3| Arabidopsis thaliana unknown protein AT5G41940 mRNA, complete cds Length = 1818 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 356 ttggttactgtcaaggaatgag 377 |||||||||||||||||||||| Sbjct: 1125 ttggttactgtcaaggaatgag 1146
>gb|AC102862.7| Mus musculus chromosome 8, clone RP24-535D22, complete sequence Length = 140264 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 354 tgttggttactgtcaaggaatg 375 |||||||||||||||||||||| Sbjct: 15100 tgttggttactgtcaaggaatg 15079
>emb|BX842280.1|CNS0A086 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB41ZF03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1704 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 356 ttggttactgtcaaggaatgag 377 |||||||||||||||||||||| Sbjct: 1127 ttggttactgtcaaggaatgag 1148
>dbj|AK176436.1| Arabidopsis thaliana mRNA for GTPase activator protein of Rab-like small GTPases-like protein, complete cds, clone: RAFL24-19-I05 Length = 1744 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 356 ttggttactgtcaaggaatgag 377 |||||||||||||||||||||| Sbjct: 1146 ttggttactgtcaaggaatgag 1167
>dbj|AB017067.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20 Length = 83689 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 356 ttggttactgtcaaggaatgag 377 |||||||||||||||||||||| Sbjct: 7116 ttggttactgtcaaggaatgag 7137
>ref|NM_124737.2| Arabidopsis thaliana unknown protein AT5G53570 mRNA, complete cds Length = 2367 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 tactgtcaaggaatgagtgat 381 ||||||||||||||||||||| Sbjct: 1446 tactgtcaaggaatgagtgat 1466
>emb|BX119904.4| Human DNA sequence from clone RP11-232D9 on chromosome X Contains two pseudogenes similar to part of solute carrier family 6 (neurotransmitter transporter) member 14 (SLC6A14) and a novel gene, complete sequence Length = 178704 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 agttatcacagcaccacttat 71 ||||||||||||||||||||| Sbjct: 137722 agttatcacagcaccacttat 137742
>emb|AL591602.7| Human DNA sequence from clone RP5-1092E23 on chromosome 1 Contains part of the gene for a novel protein and a zinc finger protein pseudogene, complete sequence Length = 149988 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 agttatcacagcaccacttat 71 ||||||||||||||||||||| Sbjct: 110326 agttatcacagcaccacttat 110306
>gb|AC016885.16| Homo sapiens chromosome 8, clone RP11-388K12, complete sequence Length = 210008 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 ctagcagcaacaatggaattg 175 ||||||||||||||||||||| Sbjct: 153469 ctagcagcaacaatggaattg 153449
>gb|AC121251.2| Homo sapiens chromosome 3 clone RP11-143O1, complete sequence Length = 34533 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 agttatcacagcaccacttat 71 ||||||||||||||||||||| Sbjct: 24008 agttatcacagcaccacttat 24028
>gb|AY102156.1| Arabidopsis thaliana AT5g53570/MNC6_11 mRNA, complete cds Length = 1653 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 tactgtcaaggaatgagtgat 381 ||||||||||||||||||||| Sbjct: 1066 tactgtcaaggaatgagtgat 1086
>ref|XM_688957.1| PREDICTED: Danio rerio similar to GH regulated TBC protein 1 (LOC565690), mRNA Length = 1182 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 352 gatgttggttactgtcaaggaatga 376 ||||||||||||||||| ||||||| Sbjct: 952 gatgttggttactgtcagggaatga 976
>ref|XM_688708.1| PREDICTED: Danio rerio similar to GH regulated TBC protein 1 (LOC573452), mRNA Length = 1050 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 352 gatgttggttactgtcaaggaatga 376 ||||||||||||||||| ||||||| Sbjct: 484 gatgttggttactgtcagggaatga 508
>dbj|AK221904.1| Arabidopsis thaliana mRNA for GTPase activator protein of Rab-like small GTPases-like protein, partial cds, clone: RAFL22-33-M06 Length = 1275 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 tactgtcaaggaatgagtgat 381 ||||||||||||||||||||| Sbjct: 359 tactgtcaaggaatgagtgat 379
>gb|AC158361.3| Mus musculus BAC clone RP23-227A12 from chromosome 3, complete sequence Length = 211804 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 gagtggaagcttacattacat 240 ||||||||||||||||||||| Sbjct: 76875 gagtggaagcttacattacat 76855
>gb|AY039546.1| Arabidopsis thaliana AT5g53570/MNC6_11 mRNA, complete cds Length = 2273 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 tactgtcaaggaatgagtgat 381 ||||||||||||||||||||| Sbjct: 1445 tactgtcaaggaatgagtgat 1465
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 gatgcgttttggtgctttgag 441 ||||||||||||||||||||| Sbjct: 34674960 gatgcgttttggtgctttgag 34674980
>emb|BX831263.1|CNS0A1Q7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS72ZG10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2258 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 tactgtcaaggaatgagtgat 381 ||||||||||||||||||||| Sbjct: 1388 tactgtcaaggaatgagtgat 1408
>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E04 Length = 94096 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 gatgcgttttggtgctttgag 441 ||||||||||||||||||||| Sbjct: 31911 gatgcgttttggtgctttgag 31931
>emb|AL929270.14| Mouse DNA sequence from clone RP23-100K15 on chromosome X, complete sequence Length = 115038 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 aaagatgttggttactgtcaa 369 ||||||||||||||||||||| Sbjct: 98220 aaagatgttggttactgtcaa 98240
>dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6 Length = 82952 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 tactgtcaaggaatgagtgat 381 ||||||||||||||||||||| Sbjct: 47744 tactgtcaaggaatgagtgat 47724
>gb|AC139333.4| Mus musculus BAC clone RP24-83F12 from 3, complete sequence Length = 162197 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 419 cagatgcgttttggtgctttgagaa 443 |||||| |||||||||||||||||| Sbjct: 24986 cagatgagttttggtgctttgagaa 25010
>gb|AC166173.3| Mus musculus BAC clone RP23-101K10 from chromosome 3, complete sequence Length = 196177 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 419 cagatgcgttttggtgctttgagaa 443 |||||| |||||||||||||||||| Sbjct: 69666 cagatgagttttggtgctttgagaa 69642
>emb|AL928846.4| Human DNA sequence from clone RP11-9I7 on chromosome 9, complete sequence Length = 146621 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ctagcagcaacaatggaattg 175 ||||||||||||||||||||| Sbjct: 85441 ctagcagcaacaatggaattg 85461
>emb|AL672287.12| Mouse DNA sequence from clone RP23-151I8 on chromosome X, complete sequence Length = 81776 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 aaagatgttggttactgtcaa 369 ||||||||||||||||||||| Sbjct: 64958 aaagatgttggttactgtcaa 64978
>ref|NM_129910.1| Arabidopsis thaliana unknown protein AT2G43490 mRNA, complete cds Length = 2271 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 357 tggttactgtcaaggaatgagtgattta 384 |||||| || |||||||||||||||||| Sbjct: 1197 tggttattgccaaggaatgagtgattta 1224
>ref|NM_201567.1| Homo sapiens cell division cycle 25A (CDC25A), transcript variant 2, mRNA Length = 3597 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gagaacaaggaaaatctttc 308 |||||||||||||||||||| Sbjct: 779 gagaacaaggaaaatctttc 798
>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome Length = 1111496 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 gatggaagacctattaaagatcct 102 |||| ||||||||||||||||||| Sbjct: 648111 gatgtaagacctattaaagatcct 648088
>ref|XM_598423.2| PREDICTED: Bos taurus similar to cell division cycle 25A isoform a, transcript variant 1 (LOC520188), mRNA Length = 1496 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gagaacaaggaaaatctttc 308 |||||||||||||||||||| Sbjct: 412 gagaacaaggaaaatctttc 431
>gb|AY429356.1| Arabidopsis thaliana At2g43490 mRNA, partial sequence, alternatively spliced Length = 1810 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 357 tggttactgtcaaggaatgagtgattta 384 |||||| || |||||||||||||||||| Sbjct: 267 tggttattgccaaggaatgagtgattta 294
>gb|AY429355.1| Arabidopsis thaliana At2g43490 mRNA, partial sequence Length = 1816 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 357 tggttactgtcaaggaatgagtgattta 384 |||||| || |||||||||||||||||| Sbjct: 267 tggttattgccaaggaatgagtgattta 294
>emb|BX465201.38| Zebrafish DNA sequence from clone DKEY-15F11 in linkage group 14, complete sequence Length = 262688 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ggaatgagtgatttatgctc 389 |||||||||||||||||||| Sbjct: 2075 ggaatgagtgatttatgctc 2056
>gb|AC121771.3| Mus musculus BAC clone RP23-348H21 from chromosome 3, complete sequence Length = 190309 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 aggctacttcaaaccaaaacacct 139 |||||||||||||||||| ||||| Sbjct: 159474 aggctacttcaaaccaaatcacct 159451
>gb|AC122012.3| Mus musculus BAC clone RP24-353N4 from 5, complete sequence Length = 188867 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tcaaggaatgagtgatttat 385 |||||||||||||||||||| Sbjct: 147144 tcaaggaatgagtgatttat 147125
>gb|AC012372.4| Homo sapiens BAC clone CTD-2568K21 from 7, complete sequence Length = 91573 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 ttcagcaccttgcatccatt 528 |||||||||||||||||||| Sbjct: 27779 ttcagcaccttgcatccatt 27798
>ref|XM_662772.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.40223) partial mRNA Length = 1080 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 gatgttggttactgtcaaggaatg 375 |||||||||||||| ||||||||| Sbjct: 583 gatgttggttactgccaaggaatg 606
>gb|AC146208.2| Pan troglodytes BAC clone RP43-34A11 from 7, complete sequence Length = 169225 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 ttcagcaccttgcatccatt 528 |||||||||||||||||||| Sbjct: 95792 ttcagcaccttgcatccatt 95773
>emb|AL139384.17| Human DNA sequence from clone RP11-88E10 on chromosome 13q33.1-34 Contains the 5' end of the ATP11A gene for Class VI ATPase type IIA, a novel gene, the 5' end of the TUBGCP3 gene for tubulin gamma complex associated protein 3 and two CpG islands, complete sequence Length = 187157 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ggtgcttcaactagcagcaa 164 |||||||||||||||||||| Sbjct: 160493 ggtgcttcaactagcagcaa 160512
>gb|AY137580.1| Homo sapiens cell division cycle protein 25A splice variant 2 (CDC25A) mRNA, complete cds; alternatively spliced Length = 1455 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gagaacaaggaaaatctttc 308 |||||||||||||||||||| Sbjct: 415 gagaacaaggaaaatctttc 434
>emb|BX571863.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 5/17 Length = 349318 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 cagcaacaatggaattgaag 178 |||||||||||||||||||| Sbjct: 136712 cagcaacaatggaattgaag 136693
>emb|AJ235272.1|RPXX03 Rickettsia prowazekii strain Madrid E, complete genome; segment 3/4 Length = 279110 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 gatggaagacctattaaagatcct 102 |||| ||||||||||||||||||| Sbjct: 49514 gatgtaagacctattaaagatcct 49491
>gb|DQ445142.1| Beta vulgaris chromosome 9 clone BAC123 genomic sequence Length = 31403 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 cttcaaaccaaaacacctca 141 |||||||||||||||||||| Sbjct: 22556 cttcaaaccaaaacacctca 22537
>gb|AC160143.4| Pan troglodytes BAC clone CH251-565M18 from chromosome unknown, complete sequence Length = 212611 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 ggtgcttcaactagcagcaa 164 |||||||||||||||||||| Sbjct: 69086 ggtgcttcaactagcagcaa 69067
>gb|AC107877.4| Homo sapiens chromosome 8, clone RP11-74P9, complete sequence Length = 181925 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 aatctttcaaagttatggga 320 |||||||||||||||||||| Sbjct: 167316 aatctttcaaagttatggga 167297
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 451 cgtagattgcgaggaaatttcaga 474 |||||||||||| ||||||||||| Sbjct: 2562020 cgtagattgcgaagaaatttcaga 2561997
>ref|XM_625792.1| Cryptosporidium parvum Iowa II TBC domain containing protein (cgd4_1980), partial mRNA Length = 1080 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 gatgttggttactgtcaaggaatg 375 |||||||||||||| ||||||||| Sbjct: 583 gatgttggttactgccaaggaatg 606
>gb|AF212831.2|AF212831 Homo sapiens chromosome 21 clone BAC R-45M19 map 21q21, complete sequence Length = 159255 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 catgttggtagtggtaaagt 53 |||||||||||||||||||| Sbjct: 88889 catgttggtagtggtaaagt 88908
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 ggttactgtcaaggaatgagtgat 381 |||||||||||||| ||||||||| Sbjct: 20415929 ggttactgtcaaggtatgagtgat 20415906
>gb|AF277722.1|AF277722 Homo sapiens cell division cycle 25A splice variant 2 (CDC25A) mRNA, partial cds Length = 474 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gagaacaaggaaaatctttc 308 |||||||||||||||||||| Sbjct: 307 gagaacaaggaaaatctttc 326
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1531_B07 Length = 115245 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 ggttactgtcaaggaatgagtgat 381 |||||||||||||| ||||||||| Sbjct: 44068 ggttactgtcaaggtatgagtgat 44045
>dbj|BS000031.1| Pan troglodytes chromosome 22 clone:PTB-082B23, map 22, complete sequences Length = 218696 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 catgttggtagtggtaaagt 53 |||||||||||||||||||| Sbjct: 90642 catgttggtagtggtaaagt 90661
>dbj|AB005232.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBG8 Length = 80315 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 316 tgggatattctagccgtgtatgcatggattgacaaagatgttggttactgtcaagg 371 ||||| |||||||| | || |||||||| ||||| ||||||||||| || ||||| Sbjct: 8974 tgggacattctagctctttacgcatggatagacaatgatgttggttattgccaagg 8919
>dbj|AK070219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043K12, full insert sequence Length = 2098 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ggttactgtcaaggaatgagtgat 381 |||||||||||||| ||||||||| Sbjct: 1187 ggttactgtcaaggtatgagtgat 1210
>emb|AL163213.2|HS21C013 Homo sapiens chromosome 21 segment HS21C013 Length = 340000 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 catgttggtagtggtaaagt 53 |||||||||||||||||||| Sbjct: 249555 catgttggtagtggtaaagt 249574
>gb|AC147476.3| Mus musculus BAC clone RP23-132H10 from 3, complete sequence Length = 197405 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 aggctacttcaaaccaaaacacct 139 |||||||||||||||||| ||||| Sbjct: 115027 aggctacttcaaaccaaatcacct 115050 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,848,367 Number of Sequences: 3902068 Number of extensions: 4848367 Number of successful extensions: 85417 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85120 Number of HSP's gapped (non-prelim): 293 length of query: 543 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 520 effective length of database: 17,143,297,704 effective search space: 8914514806080 effective search space used: 8914514806080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)